Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX77199 | Canola | nucleus | 100.0 | 99.35 |
| Bra035677.1-P | Field mustard | nucleus | 96.73 | 99.33 |
| CDY71843 | Canola | nucleus | 96.08 | 98.66 |
| CDY15776 | Canola | nucleus | 95.42 | 98.65 |
| CDX83300 | Canola | nucleus | 98.69 | 97.42 |
| CDX95762 | Canola | nucleus | 96.08 | 97.35 |
| CDX86049 | Canola | nucleus | 79.74 | 92.42 |
| CDX71064 | Canola | nucleus | 84.31 | 91.49 |
| CDX88732 | Canola | nucleus | 84.31 | 91.49 |
| CDY31584 | Canola | nucleus | 89.54 | 91.33 |
| CDY09241 | Canola | nucleus | 84.31 | 90.85 |
| AT2G28720.1 | Thale cress | nucleus | 89.54 | 90.73 |
| CDX80214 | Canola | nucleus | 88.89 | 90.67 |
| CDX99134 | Canola | nucleus | 81.05 | 90.51 |
| CDY30852 | Canola | nucleus | 81.05 | 89.86 |
| CDY52745 | Canola | nucleus | 80.39 | 89.78 |
| VIT_13s0019g05370.t01 | Wine grape | nucleus | 84.97 | 89.66 |
| CDX71019 | Canola | nucleus | 83.01 | 89.44 |
| CDY26964 | Canola | nucleus | 82.35 | 89.36 |
| KRH29836 | Soybean | nucleus | 85.62 | 88.51 |
| KRH29831 | Soybean | nucleus | 85.62 | 88.51 |
| KRH29832 | Soybean | nucleus | 85.62 | 88.51 |
| CDX88779 | Canola | nucleus | 83.01 | 88.19 |
| KRH29833 | Soybean | nucleus | 82.35 | 88.11 |
| KRH24831 | Soybean | nucleus | 85.62 | 87.92 |
| KRH24833 | Soybean | nucleus | 85.62 | 87.92 |
| KRH24830 | Soybean | nucleus | 84.97 | 87.25 |
| CDX92329 | Canola | nucleus | 80.39 | 85.42 |
| CDX71015 | Canola | nucleus | 28.76 | 66.67 |
| CDX93584 | Canola | nucleus | 49.67 | 29.57 |
| CDX95087 | Canola | nucleus | 49.02 | 23.51 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.3 | GO:A0A078K3Z1 | UniProt:A0A078K3Z1 | EnsemblPlants:CDY72471 | ProteinID:CDY72471 |
| ProteinID:CDY72471.1 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005694 |
| GO:GO:0046982 | EnsemblPlantsGene:GSBRNA2T00029937001 | InterPro:Histone-fold | InterPro:Histone_H2A/H2B/H3 | InterPro:Histone_H2B | InterPro:IPR009072 |
| PFAM:PF00125 | PRINTS:PR00621 | ScanProsite:PS00357 | PANTHER:PTHR23428 | PANTHER:PTHR23428:SF97 | SMART:SM00427 |
| SUPFAM:SSF47113 | UniParc:UPI0004EE563E | SEG:seg | : | : | : |
Description
BnaCnng77830DHistone H2B [Source:UniProtKB/TrEMBL;Acc:A0A078K3Z1]
Coordinates
chrLK051242:-:273..992
Molecular Weight (calculated)
16543.3 Da
IEP (calculated)
10.769
GRAVY (calculated)
-0.571
Length
153 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPKAGKKPA EKKPAAAAAA AEKPAEEVAE KAPAEKKPKA GKKLPKEAIG ATDKKKKRSK KSIETYKIYI FKVLKQVHPD IGISSKAMGI MNSFINDIFE
101: KLAQEASKLA RYNKKPTITS REIQTAVRLV LPGELAKHAV SEGTKAVTKF TSS
101: KLAQEASKLA RYNKKPTITS REIQTAVRLV LPGELAKHAV SEGTKAVTKF TSS
001: MAPRAEKKPA EKKTAAERPV EENKAAEKAP AEKKPKAGKK LPPKEAGDKK KKRSKKNVET YKIYIFKVLK QVHPDIGISS KAMGIMNSFI NDIFEKLAQE
101: SSKLARYNKK PTITSREIQT AVRLVLPGEL AKHAVSEGTK AVTKFTSS
101: SSKLARYNKK PTITSREIQT AVRLVLPGEL AKHAVSEGTK AVTKFTSS
Arabidopsis Description
HTB1Histone H2B.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQQ4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.