Factsheet for PGSC0003DMT400018366

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 5
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g074750.1.1	Tomato	mitochondrion, nucleus	90.84	87.63
TraesCS4A01G311600.1	Wheat	mitochondrion	20.88	64.04
PGSC0003DMT400043578	Potato	nucleus	29.3	56.74
PGSC0003DMT400018456	Potato	nucleus	28.94	55.63
PGSC0003DMT400070383	Potato	nucleus	28.57	54.93
PGSC0003DMT400070382	Potato	nucleus	28.94	54.86
PGSC0003DMT400060096	Potato	nucleus	29.3	54.42
PGSC0003DMT400022099	Potato	nucleus	28.57	54.17
PGSC0003DMT400077939	Potato	nucleus	28.94	54.11
PGSC0003DMT400018455	Potato	nucleus	28.21	53.85
PGSC0003DMT400022074	Potato	nucleus	28.21	53.47
PGSC0003DMT400074994	Potato	nucleus	27.84	51.7
PGSC0003DMT400001108	Potato	nucleus	26.74	51.41
PGSC0003DMT400074020	Potato	nucleus	24.54	49.63
VIT_06s0061g00870.t01	Wine grape	nucleus	34.8	43.98
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	31.87	41.43
KRH30545	Soybean	mitochondrion, nucleus	30.04	41.21
KRH25129	Soybean	nucleus	33.7	40.89
Os09t0570850-00	Rice	nucleus	22.71	40.79
HORVU4Hr1G000750.1	Barley	nucleus	24.91	38.2
AT1G08170.1	Thale cress	nucleus	30.4	34.16
Bra018647.1-P	Field mustard	nucleus	30.4	32.3
CDX93584	Canola	nucleus	30.4	32.3
Zm00001d005322_P001	Maize	nucleus	29.3	30.53
EER98531	Sorghum	nucleus	31.14	28.43
TraesCS4B01G002800.1	Wheat	nucleus	31.14	27.69
CDX95087	Canola	nucleus	30.04	25.71
PGSC0003DMT400074018	Potato	nucleus	21.98	15.75

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:102593790	MapMan:12.1.3	GO:GO:0000786	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005694	GO:GO:0046982	InterPro:Histone-fold	InterPro:Histone_H2A/H2B/H3	InterPro:Histone_H2B
InterPro:IPR009072	UniProt:M1AAH8	PFAM:PF00125	EnsemblPlantsGene:PGSC0003DMG400007131	PGSC:PGSC0003DMG400007131	EnsemblPlants:PGSC0003DMT400018366
PRINTS:PR00621	PANTHER:PTHR23428	PANTHER:PTHR23428:SF50	SMART:SM00427	SUPFAM:SSF47113	UniParc:UPI000294D7E5
RefSeq:XP_006347209.1	SEG:seg	:	:	:	:

Description

Histone H2B [Source:PGSC_GENE;Acc:PGSC0003DMG400007131]

Coordinates

chr6:+:55296930..55302114

Molecular Weight (calculated)

29957.8 Da

IEP (calculated)

9.735

GRAVY (calculated)

-0.914

Length

273 amino acids

Sequence
(BLAST)

001: MAPKKRGGRA RATVVTARKV VEETVSVVVS GETETESQTL TEENQSFEIL TPLPYEEPTP KRTINVQDKS EGKKAQQRKP DPAQQVDEVE TQPADEPEEM
101: PSPPKKEAVR KKAQKRKPDP AQRVDEDETQ PAEEPEEMPT PPKMEADQKK AQKAKGGGGE RKKKRAKVGG GVGPSEGYRR YVFRVMKQVH PDMGISSKAM
201: MILNNLMGDM FERIANEAAI LTKYAGRATL ASVDIQDAVK LVLPGELGKH AIAEGTKAVA NYVTSVEKSK SKP

Best Arabidopsis Sequence Match ( AT1G08170.1 )
(BLAST)

001: MAPRKPKVVS VTKKKKVVEE TIKVTVTEEG DPCVITETAN DQETQDLTFS IPVGENVTTV EIPVEVPDER SLPVGENVTT VKIPVDDRDE SSPQPPETPV
101: EVRDEPSPQP PETPASKSEG TLKKTDKVEK KQENKKKKKK KKRDDLAGDE YRRYVYKVMK QVHPDLGITS KAMTVVNMFM GDMFERIAQE AARLSDYTKR
201: RTLSSREIEA AVRLVLPGEL SRHAVAEGSK AVSNFVGYDS RKR

Arabidopsis Description

Histone H2B.2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.