Factsheet for Bra018647.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93584	Canola	nucleus	100.0	100.0
AT1G08170.1	Thale cress	nucleus	65.76	69.55
TraesCS4A01G311600.1	Wheat	mitochondrion	20.23	58.43
Bra003150.1-P	Field mustard	nucleus	28.4	52.9
Bra007018.1-P	Field mustard	nucleus	28.02	52.17
Bra039810.1-P	Field mustard	nucleus	28.02	52.17
Bra020275.1-P	Field mustard	nucleus	28.79	52.11
Bra038267.1-P	Field mustard	nucleus	27.63	51.82
Bra035677.1-P	Field mustard	nucleus	29.57	51.01
Bra002520.1-P	Field mustard	nucleus	29.57	50.67
Bra011930.1-P	Field mustard	nucleus	29.18	50.34
Bra002436.1-P	Field mustard	nucleus	27.24	49.65
Bra006685.1-P	Field mustard	nucleus	27.24	49.65
Bra006639.1-P	Field mustard	nucleus	27.63	49.31
Bra000483.1-P	Field mustard	nucleus	29.57	49.03
VIT_06s0061g00870.t01	Wine grape	nucleus	36.58	43.52
KRH30545	Soybean	mitochondrion, nucleus	32.3	41.71
KRH25129	Soybean	nucleus	35.41	40.44
Os09t0570850-00	Rice	nucleus	23.74	40.13
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	32.68	40.0
HORVU4Hr1G000750.1	Barley	nucleus	24.51	35.39
PGSC0003DMT400018366	Potato	mitochondrion, nucleus	32.3	30.4
Solyc06g074750.1.1	Tomato	mitochondrion, nucleus	31.91	28.98
Zm00001d005322_P001	Maize	nucleus	27.24	26.72
EER98531	Sorghum	nucleus	29.96	25.75
TraesCS4B01G002800.1	Wheat	nucleus	28.02	23.45

Protein Annotations

Gene3D:1.10.20.10	MapMan:12.1.3	EnsemblPlantsGene:Bra018647	EnsemblPlants:Bra018647.1	EnsemblPlants:Bra018647.1-P	GO:GO:0000786
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0046982	InterPro:Histone-fold
InterPro:Histone_H2A/H2B/H3	InterPro:Histone_H2B	InterPro:IPR009072	UniProt:M4DQ55	PFAM:PF00125	PRINTS:PR00621
PANTHER:PTHR23428	PANTHER:PTHR23428:SF50	SMART:SM00427	SUPFAM:SSF47113	UniParc:UPI000253E71B	SEG:seg

Description

AT1G08170 (E=2e-059) | histone H2B family protein

Coordinates

chrA06:-:2813906..2814679

Molecular Weight (calculated)

28669.0 Da

IEP (calculated)

7.798

GRAVY (calculated)

-0.797

Length

257 amino acids

Sequence
(BLAST)

001: MAPRKSKKVV SVTKKKKVVE ETIKVTVTDG VPNVTTNTDT QETQYLETQE LDTQELETQD LPFSLPLEEE NVTRVEIPVD VGYDRSPPPP ETVAPASEGT
101: VKETHKVEIP VEFGDDRSPQ PPETPAPASE VPAKETHKDE EKQGNKKTTS KKRKKNRSEV AGDEYKRYVY KVMKQVHPDL GISSKAMTVI NMFMGDMFER
201: LAVEAAKLND YSKRRTLSSR EIEAAVRLVL PGELSRHAVA EGSKAVSNFV AYGAKKR

Best Arabidopsis Sequence Match ( AT1G08170.1 )
(BLAST)

001: MAPRKPKVVS VTKKKKVVEE TIKVTVTEEG DPCVITETAN DQETQDLTFS IPVGENVTTV EIPVEVPDER SLPVGENVTT VKIPVDDRDE SSPQPPETPV
101: EVRDEPSPQP PETPASKSEG TLKKTDKVEK KQENKKKKKK KKRDDLAGDE YRRYVYKVMK QVHPDLGITS KAMTVVNMFM GDMFERIAQE AARLSDYTKR
201: RTLSSREIEA AVRLVLPGEL SRHAVAEGSK AVSNFVGYDS RKR

Arabidopsis Description

Histone H2B.2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.