CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 5
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH25129	Soybean	nucleus	84.42	74.67
TraesCS4A01G311600.1	Wheat	mitochondrion	28.14	62.92
KRG92106	Soybean	nucleus	34.17	50.0
KRH67549	Soybean	nucleus	34.17	49.28
KRG95819	Soybean	nucleus	34.17	49.28
KRH19721	Soybean	nucleus	34.17	48.92
KRH34681	Soybean	nucleus	33.67	48.91
KRH29833	Soybean	nucleus	34.67	48.25
KRH22818	Soybean	nucleus	32.16	48.12
KRH29836	Soybean	nucleus	35.68	47.97
KRH29832	Soybean	nucleus	35.68	47.97
KRH29831	Soybean	nucleus	35.68	47.97
KRH26542	Soybean	nucleus	32.16	47.76
KRH24830	Soybean	nucleus	35.68	47.65
KRH24833	Soybean	nucleus	35.68	47.65
KRH24831	Soybean	nucleus	35.68	47.65
VIT_06s0061g00870.t01	Wine grape	nucleus	45.73	42.13
Os09t0570850-00	Rice	nucleus	28.64	37.5
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	39.2	37.14
HORVU4Hr1G000750.1	Barley	nucleus	32.16	35.96
AT1G08170.1	Thale cress	nucleus	41.71	34.16
Bra018647.1-P	Field mustard	nucleus	41.71	32.3
CDX93584	Canola	nucleus	41.71	32.3
PGSC0003DMT400018366	Potato	mitochondrion, nucleus	41.21	30.04
Solyc06g074750.1.1	Tomato	mitochondrion, nucleus	41.21	28.98
EER98531	Sorghum	nucleus	41.71	27.76
Zm00001d005322_P001	Maize	nucleus	35.68	27.1
TraesCS4B01G002800.1	Wheat	nucleus	39.7	25.73
CDX95087	Canola	nucleus	41.21	25.71

Protein Annotations

Gene3D:1.10.20.10	MapMan:12.1.3	EMBL:ACUP02007036	ncoils:Coil	EnsemblPlantsGene:GLYMA_11G191600	GO:GO:0000786
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0046982	InterPro:Histone-fold
InterPro:Histone_H2A/H2B/H3	InterPro:Histone_H2B	UniProt:I1LKY2	InterPro:IPR009072	EnsemblPlants:KRH30545	ProteinID:KRH30545
ProteinID:KRH30545.1	PFAM:PF00125	PRINTS:PR00621	PANTHER:PTHR23428	PANTHER:PTHR23428:SF50	SMART:SM00427
SUPFAM:SSF47113	UniParc:UPI000296A39C	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr11:+:26473605..26474282

Molecular Weight (calculated)

22405.7 Da

IEP (calculated)

9.799

GRAVY (calculated)

-0.857

Length

199 amino acids

Sequence
(BLAST)

001: MAPKRAEKLV VRSTKKVVES IVQVSVVGKR LTQVIPQAQK VSPNSDITTE NKAEQENNTH QDGGVQNQEE EQKGVVNEEA KEEKNKSKTA KEQNGKEKKR
101: GRKKRNIEGY QRYVYGVLKQ VHPEMGISSK CMTALNNLMN DMFERLTFEV SKLTDYTGHM TLSSREIQGV VRLVLPGELE KHAIAEGVKA VNNYTSYDA

Best Arabidopsis Sequence Match ( AT1G08170.1 )
(BLAST)

001: MAPRKPKVVS VTKKKKVVEE TIKVTVTEEG DPCVITETAN DQETQDLTFS IPVGENVTTV EIPVEVPDER SLPVGENVTT VKIPVDDRDE SSPQPPETPV
101: EVRDEPSPQP PETPASKSEG TLKKTDKVEK KQENKKKKKK KKRDDLAGDE YRRYVYKVMK QVHPDLGITS KAMTVVNMFM GDMFERIAQE AARLSDYTKR
201: RTLSSREIEA AVRLVLPGEL SRHAVAEGSK AVSNFVGYDS RKR

Arabidopsis Description

Histone H2B.2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.