Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G311600.1 | Wheat | mitochondrion | 28.34 | 97.75 |
| HORVU4Hr1G000750.1 | Barley | nucleus | 52.44 | 90.45 |
| Os09t0570850-00 | Rice | nucleus | 31.27 | 63.16 |
| TraesCS7B01G394800.1 | Wheat | nucleus | 17.59 | 55.67 |
| TraesCS6B01G055500.1 | Wheat | nucleus | 17.26 | 55.21 |
| TraesCS6B01G055300.1 | Wheat | nucleus | 17.26 | 55.21 |
| TraesCS7B01G394500.1 | Wheat | nucleus | 16.94 | 54.17 |
| Zm00001d005322_P001 | Maize | nucleus | 40.72 | 47.71 |
| TraesCS1B01G244900.1 | Wheat | nucleus | 23.45 | 47.37 |
| TraesCS1B01G245300.1 | Wheat | nucleus | 23.45 | 47.37 |
| TraesCS3B01G390000.1 | Wheat | nucleus | 20.85 | 47.06 |
| TraesCS3B01G390100.1 | Wheat | nucleus | 20.52 | 46.67 |
| TraesCS1B01G192500.1 | Wheat | nucleus | 23.13 | 46.41 |
| TraesCS7B01G394700.1 | Wheat | nucleus | 20.85 | 46.38 |
| TraesCS7B01G394400.1 | Wheat | nucleus | 20.85 | 46.38 |
| TraesCS4B01G204400.1 | Wheat | nucleus | 22.48 | 46.31 |
| TraesCS4B01G275400.1 | Wheat | nucleus | 23.13 | 46.1 |
| TraesCS6B01G084900.1 | Wheat | nucleus | 23.13 | 46.1 |
| TraesCS3B01G114400.1 | Wheat | nucleus | 20.2 | 45.93 |
| TraesCS7B01G394100.1 | Wheat | nucleus | 20.52 | 45.65 |
| TraesCS7B01G394600.1 | Wheat | nucleus | 20.52 | 45.65 |
| TraesCS4B01G054200.1 | Wheat | nucleus | 22.48 | 45.39 |
| TraesCS5B01G064900.1 | Wheat | nucleus, unclear | 23.45 | 45.28 |
| TraesCS5B01G058200.1 | Wheat | nucleus | 23.45 | 45.28 |
| TraesCS1B01G294500.1 | Wheat | nucleus | 21.82 | 45.27 |
| TraesCS3B01G114600.1 | Wheat | nucleus | 19.87 | 45.19 |
| TraesCS6B01G116000.1 | Wheat | nucleus | 19.87 | 45.19 |
| TraesCS7B01G405800.1 | Wheat | nucleus | 20.2 | 44.6 |
| TraesCS1B01G357600.1 | Wheat | nucleus | 20.85 | 44.44 |
| TraesCS6B01G049300.1 | Wheat | nucleus | 20.85 | 44.44 |
| EER98531 | Sorghum | nucleus | 43.0 | 44.15 |
| TraesCS5B01G389100.1 | Wheat | nucleus | 21.82 | 44.08 |
| TraesCS6B01G049100.1 | Wheat | nucleus | 20.52 | 43.75 |
| TraesCS6B01G048800.1 | Wheat | nucleus | 20.52 | 43.75 |
| TraesCS6B01G082600.1 | Wheat | nucleus | 20.52 | 43.75 |
| TraesCS7B01G394900.1 | Wheat | nucleus | 20.2 | 43.66 |
| TraesCS6B01G048500.1 | Wheat | unclear | 20.52 | 43.45 |
| TraesCS3B01G390300.1 | Wheat | nucleus | 18.89 | 43.28 |
| TraesCS1B01G416600.1 | Wheat | nucleus | 21.17 | 43.05 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plastid | 29.32 | 42.86 |
| TraesCS6B01G376900.1 | Wheat | nucleus | 21.17 | 42.76 |
| TraesCS1B01G386700.1 | Wheat | nucleus | 21.17 | 42.48 |
| TraesCS1B01G386600.1 | Wheat | nucleus | 21.17 | 42.48 |
| TraesCS1B01G386400.1 | Wheat | nucleus | 21.17 | 42.48 |
| TraesCS1B01G386200.1 | Wheat | nucleus | 21.17 | 42.48 |
| TraesCS1B01G378300.1 | Wheat | nucleus | 20.85 | 41.83 |
| TraesCS1B01G386500.1 | Wheat | nucleus | 20.85 | 41.83 |
| KRH30545 | Soybean | mitochondrion, nucleus | 25.73 | 39.7 |
| KRH25129 | Soybean | nucleus | 27.36 | 37.33 |
| VIT_06s0061g00870.t01 | Wine grape | nucleus | 25.08 | 35.65 |
| TraesCS6B01G081700.1 | Wheat | nucleus | 16.94 | 31.71 |
| PGSC0003DMT400018366 | Potato | mitochondrion, nucleus | 27.69 | 31.14 |
| Solyc06g074750.1.1 | Tomato | mitochondrion, nucleus | 27.04 | 29.33 |
| CDX93584 | Canola | nucleus | 23.45 | 28.02 |
| Bra018647.1-P | Field mustard | nucleus | 23.45 | 28.02 |
| AT1G08170.1 | Thale cress | nucleus | 21.17 | 26.75 |
| CDX95087 | Canola | nucleus | 23.13 | 22.26 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.3 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0046982 |
| InterPro:Histone-fold | InterPro:Histone_H2A/H2B/H3 | InterPro:Histone_H2B | InterPro:IPR009072 | PFAM:PF00125 | PRINTS:PR00621 |
| PANTHER:PTHR23428 | PANTHER:PTHR23428:SF50 | SMART:SM00427 | SUPFAM:SSF47113 | EnsemblPlantsGene:TraesCS4B01G002800 | EnsemblPlants:TraesCS4B01G002800.1 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr4B:+:1696904..1697827
Molecular Weight (calculated)
33133.1 Da
IEP (calculated)
10.241
GRAVY (calculated)
-0.899
Length
307 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPKRRGSKV VSSVVKTKVV EETVEVATTI LPASQSQSQP DSAAQEEDLQ QPEVVDVSRS RDVHVEVVTT PDAQPTHGAK KQPASKRGAA NAKPPAGPLV
101: VPVSPSPQEQ EAQPAEEQQQ QRKKGGGKTP ASLQSQETQE NPYAYQDETT KKRPAEEDDG AEPNKPEGPE TPTQKRSRTE GKAKTRKAEA AARKKLSAAA
201: GKGKGGRRRR RLGGNNVDMG YKAYVYRVLK QVHPDLGASG KTMQALDMMM ADMFERLATE ASRLAQYAGR ATLTSRDVQN AVRLVLPGEL AKHAISEGTK
301: AVTMYMS
101: VPVSPSPQEQ EAQPAEEQQQ QRKKGGGKTP ASLQSQETQE NPYAYQDETT KKRPAEEDDG AEPNKPEGPE TPTQKRSRTE GKAKTRKAEA AARKKLSAAA
201: GKGKGGRRRR RLGGNNVDMG YKAYVYRVLK QVHPDLGASG KTMQALDMMM ADMFERLATE ASRLAQYAGR ATLTSRDVQN AVRLVLPGEL AKHAISEGTK
301: AVTMYMS
001: MAPRAEKKPA EKKPAAEKPV EEKSKAEKAP AEKKPKAGKK LPKEAGAGGD KKKKMKKKSV ETYKIYIFKV LKQVHPDIGI SSKAMGIMNS FINDIFEKLA
101: SESSKLARYN KKPTITSREI QTAVRLVLPG ELAKHAVSEG TKAVTKFTSS
101: SESSKLARYN KKPTITSREI QTAVRLVLPG ELAKHAVSEG TKAVTKFTSS
Arabidopsis Description
H2BHistone H2B [Source:UniProtKB/TrEMBL;Acc:A0A178V9F6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.