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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:nucleus
MultiLoc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
unclear: 25769308
nucleus: 26579155
msms PMID: 25769308 doi
AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré
INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.
msms PMID: 26579155 doi
T Bonnot, E Bancel, C Chambon, J Boudet, G Branlard, P Martre
Metabolism Exploration Platform Proteomic Component, Institut National de la Recherche Agronomique Saint-Genès Champanelle, France., UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Institut National de la Recherche Agronomique Clermont-Ferrand, France ; UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Blaise Pascal University Aubière, France.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS6D01G326800.1 Wheat nucleus, unclear 99.34 98.05
TraesCS1B01G416600.1 Wheat nucleus 96.05 96.69
TraesCS1B01G386400.1 Wheat nucleus 96.71 96.08
TraesCS7B01G394800.1 Wheat nucleus 61.18 95.88
TraesCS1B01G378300.1 Wheat nucleus 96.05 95.42
TraesCS1B01G386200.1 Wheat nucleus 96.05 95.42
TraesCS1B01G386600.1 Wheat nucleus 96.05 95.42
TraesCS1B01G386700.1 Wheat nucleus 96.05 95.42
TraesCS6B01G055300.1 Wheat nucleus 59.87 94.79
TraesCS6B01G055500.1 Wheat nucleus 59.87 94.79
TraesCS1B01G386500.1 Wheat nucleus 95.39 94.77
TraesCS6B01G049300.1 Wheat nucleus 88.82 93.75
TraesCS6B01G048500.1 Wheat unclear 88.82 93.1
TraesCS1B01G357600.1 Wheat nucleus 88.16 93.06
TraesCS6B01G048800.1 Wheat nucleus 88.16 93.06
TraesCS7B01G394500.1 Wheat nucleus 58.55 92.71
TraesCS6B01G116000.1 Wheat nucleus 81.58 91.85
TraesCS6B01G049100.1 Wheat nucleus 86.84 91.67
TraesCS6B01G082600.1 Wheat nucleus 86.84 91.67
TraesCS3B01G114600.1 Wheat nucleus 80.26 90.37
TraesCS7B01G394700.1 Wheat nucleus 81.58 89.86
TraesCS7B01G394600.1 Wheat nucleus 80.92 89.13
TraesCS7B01G394100.1 Wheat nucleus 80.26 88.41
TraesCS7B01G394400.1 Wheat nucleus 80.26 88.41
TraesCS3B01G114400.1 Wheat nucleus 78.29 88.15
TraesCS7B01G394900.1 Wheat nucleus 82.24 88.03
GSMUA_Achr9P04060_001 Banana nucleus 67.11 87.18
TraesCS7B01G405800.1 Wheat nucleus 79.61 87.05
TraesCS4B01G054200.1 Wheat nucleus 86.84 86.84
Zm00001d007084_P001 Maize plastid 86.84 86.84
TraesCS3B01G390000.1 Wheat nucleus 76.97 86.03
TraesCS3B01G390100.1 Wheat nucleus 76.32 85.93
TraesCS4B01G275400.1 Wheat nucleus 86.84 85.71
TraesCS6B01G084900.1 Wheat nucleus 86.84 85.71
TraesCS1B01G192500.1 Wheat nucleus 86.18 85.62
TraesCS5B01G058200.1 Wheat nucleus 89.47 85.53
TraesCS5B01G064900.1 Wheat nucleus, unclear 89.47 85.53
TraesCS1B01G244900.1 Wheat nucleus 85.53 85.53
TraesCS1B01G245300.1 Wheat nucleus 85.53 85.53
TraesCS4B01G204400.1 Wheat nucleus 83.55 85.23
Zm00001d051591_P001 Maize plastid 86.18 85.06
TraesCS5B01G389100.1 Wheat nucleus 82.89 82.89
KRH26542 Soybean nucleus 73.03 82.84
KRH22818 Soybean nucleus 72.37 82.71
AT2G37470.1 Thale cress nucleus 75.0 82.61
Bra038267.1-P Field mustard nucleus 74.34 82.48
TraesCS1B01G294500.1 Wheat nucleus 80.26 82.43
KRG95819 Soybean nucleus 74.34 81.88
KRH67549 Soybean nucleus 74.34 81.88
KRH34681 Soybean nucleus 73.68 81.75
HORVU1Hr1G078480.6 Barley nucleus 96.71 81.67
HORVU1Hr1G078530.3 Barley nucleus 96.71 81.67
PGSC0003DMT400077939 Potato nucleus 78.29 81.51
Solyc06g075800.1.1 Tomato nucleus 78.29 81.51
Bra007018.1-P Field mustard nucleus 73.68 81.16
Bra039810.1-P Field mustard nucleus 73.68 81.16
KRG92106 Soybean nucleus 72.37 80.88
KRH19721 Soybean nucleus 73.68 80.58
KRH29833 Soybean nucleus 75.66 80.42
PGSC0003DMT400043578 Potato nucleus 74.34 80.14
Solyc03g071620.1.1 Tomato nucleus 74.34 80.14
AT3G46030.1 Thale cress nucleus 76.32 80.0
Bra003150.1-P Field mustard nucleus 72.37 79.71
AT5G02570.1 Thale cress nucleus 69.08 79.55
AT3G53650.1 Thale cress nucleus 71.71 78.99
Bra020275.1-P Field mustard nucleus 73.68 78.87
Solyc06g074790.1.1 Tomato nucleus 73.68 78.87
Bra006685.1-P Field mustard nucleus 73.03 78.72
Bra006639.1-P Field mustard nucleus 74.34 78.47
PGSC0003DMT400018456 Potato nucleus 73.03 78.17
PGSC0003DMT400070383 Potato nucleus 73.03 78.17
VIT_06s0004g04230.t01 Wine grape nucleus 75.0 78.08
Bra002436.1-P Field mustard nucleus 72.37 78.01
Bra002520.1-P Field mustard nucleus 76.97 78.0
AT3G09480.1 Thale cress nucleus 64.47 77.78
PGSC0003DMT400070382 Potato nucleus 73.68 77.78
KRH29831 Soybean nucleus 75.66 77.7
KRH29832 Soybean nucleus 75.66 77.7
KRH29836 Soybean nucleus 75.66 77.7
VIT_06s0004g04250.t01 Wine grape nucleus 75.66 77.7
GSMUA_Achr2P19080_001 Banana nucleus 73.03 77.62
PGSC0003DMT400074994 Potato nucleus 75.0 77.55
Solyc06g005390.1.1 Tomato nucleus 75.0 77.55
Solyc11g007930.1.1 Tomato nucleus 70.39 77.54
AT5G22880.1 Thale cress nucleus 73.68 77.24
VIT_13s0019g05370.t01 Wine grape nucleus 73.68 77.24
KRH24830 Soybean nucleus 75.66 77.18
KRH24831 Soybean nucleus 75.66 77.18
KRH24833 Soybean nucleus 75.66 77.18
Solyc11g066430.1.1 Tomato nucleus 71.05 77.14
PGSC0003DMT400060096 Potato nucleus 74.34 76.87
Solyc02g038690.1.1 Tomato nucleus 67.76 76.87
TraesCS3B01G390300.1 Wheat nucleus 67.76 76.87
AT2G28720.1 Thale cress nucleus 76.32 76.82
AT3G45980.1 Thale cress nucleus 75.66 76.67
AT5G59910.1 Thale cress nucleus 75.66 76.67
Solyc11g007920.1.1 Tomato nucleus 72.37 76.39
AT1G07790.1 Thale cress nucleus 74.34 76.35
Solyc05g055440.1.1 Tomato nucleus 73.68 76.19
PGSC0003DMT400001108 Potato nucleus 71.05 76.06
Bra035677.1-P Field mustard nucleus 74.34 75.84
PGSC0003DMT400022074 Potato nucleus 71.71 75.69
PGSC0003DMT400022099 Potato nucleus 71.71 75.69
Solyc12g013510.1.1 Tomato nucleus 69.08 75.54
PGSC0003DMT400018455 Potato nucleus 71.05 75.52
Bra011930.1-P Field mustard nucleus 73.68 75.17
Solyc06g074780.1.1 Tomato nucleus 70.39 74.83
VIT_06s0004g04300.t01 Wine grape nucleus 74.34 74.34
GSMUA_Achr7P15260_001 Banana nucleus 73.03 73.03
Bra000483.1-P Field mustard nucleus 73.68 72.26
PGSC0003DMT400074020 Potato nucleus 61.18 68.89
CDX71015 Canola nucleus 28.29 65.15
Solyc10g044580.1.1 Tomato nucleus 53.29 60.0
TraesCS6B01G081700.1 Wheat nucleus 53.95 50.0
VIT_06s0004g04240.t01 Wine grape nucleus 75.0 49.57
GSMUA_Achr6P33320_001 Banana nucleus 65.13 47.83
PGSC0003DMT400074018 Potato nucleus 53.29 21.26
TraesCS4B01G002800.1 Wheat nucleus 42.76 21.17
Protein Annotations
Gene3D:1.10.20.10MapMan:12.1.3GO:GO:0000786GO:GO:0003674GO:GO:0003676GO:GO:0003677
GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0046982
InterPro:Histone-foldInterPro:Histone_H2A/H2B/H3InterPro:Histone_H2BInterPro:IPR009072PFAM:PF00125PRINTS:PR00621
ScanProsite:PS00357PANTHER:PTHR23428PANTHER:PTHR23428:SF72SMART:SM00427SUPFAM:SSF47113EnsemblPlantsGene:TraesCS6B01G376900
EnsemblPlants:TraesCS6B01G376900.1SEG:seg::::
Description
No Description!
Coordinates
chr6B:+:651990853..651991311
Molecular Weight (calculated)
16386.0 Da
IEP (calculated)
10.906
GRAVY (calculated)
-0.678
Length
152 amino acids
Sequence
(BLAST)
001: MAPKADKKPA AESKVEKAAE KTPAGKKPKA EKRVPAGKTA AKEGGEGKTR GRKKGSKAKK SVETYKIYIF KVLKQVHPDV GISSKAMSIM NSFINDIFEK
101: LAGESAKLAR YNKKPTITSR EIQTSVRLVL PGELAKHAVS EGTKAVTKFT SS
Best Arabidopsis Sequence Match ( AT3G46030.1 )
(BLAST)
001: MAPKAEKKPA EKKPVEEKSK AEKAPAEKKP KAGKKLPKEA GAGGDKKKKM KKKSVETYKI YIFKVLKQVH PDIGISSKAM GIMNSFINDI FEKLASESSK
101: LARYNKKPTI TSREIQTAVR LVLPGELAKH AVSEGTKAVT KFTSS
Arabidopsis Description
HTB11Histone H2B [Source:UniProtKB/TrEMBL;Acc:A0A178VGU6]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.