Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
unclear:
25769308
nucleus: 26579155 |
msms PMID:
25769308
doi
INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.
msms PMID:
26579155
doi
Metabolism Exploration Platform Proteomic Component, Institut National de la Recherche Agronomique Saint-Genès Champanelle, France., UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Institut National de la Recherche Agronomique Clermont-Ferrand, France ; UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Blaise Pascal University Aubière, France.
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS6D01G326800.1 | Wheat | nucleus, unclear | 99.34 | 98.05 |
TraesCS1B01G416600.1 | Wheat | nucleus | 96.05 | 96.69 |
TraesCS1B01G386400.1 | Wheat | nucleus | 96.71 | 96.08 |
TraesCS7B01G394800.1 | Wheat | nucleus | 61.18 | 95.88 |
TraesCS1B01G378300.1 | Wheat | nucleus | 96.05 | 95.42 |
TraesCS1B01G386200.1 | Wheat | nucleus | 96.05 | 95.42 |
TraesCS1B01G386600.1 | Wheat | nucleus | 96.05 | 95.42 |
TraesCS1B01G386700.1 | Wheat | nucleus | 96.05 | 95.42 |
TraesCS6B01G055300.1 | Wheat | nucleus | 59.87 | 94.79 |
TraesCS6B01G055500.1 | Wheat | nucleus | 59.87 | 94.79 |
TraesCS1B01G386500.1 | Wheat | nucleus | 95.39 | 94.77 |
TraesCS6B01G049300.1 | Wheat | nucleus | 88.82 | 93.75 |
TraesCS6B01G048500.1 | Wheat | unclear | 88.82 | 93.1 |
TraesCS1B01G357600.1 | Wheat | nucleus | 88.16 | 93.06 |
TraesCS6B01G048800.1 | Wheat | nucleus | 88.16 | 93.06 |
TraesCS7B01G394500.1 | Wheat | nucleus | 58.55 | 92.71 |
TraesCS6B01G116000.1 | Wheat | nucleus | 81.58 | 91.85 |
TraesCS6B01G049100.1 | Wheat | nucleus | 86.84 | 91.67 |
TraesCS6B01G082600.1 | Wheat | nucleus | 86.84 | 91.67 |
TraesCS3B01G114600.1 | Wheat | nucleus | 80.26 | 90.37 |
TraesCS7B01G394700.1 | Wheat | nucleus | 81.58 | 89.86 |
TraesCS7B01G394600.1 | Wheat | nucleus | 80.92 | 89.13 |
TraesCS7B01G394100.1 | Wheat | nucleus | 80.26 | 88.41 |
TraesCS7B01G394400.1 | Wheat | nucleus | 80.26 | 88.41 |
TraesCS3B01G114400.1 | Wheat | nucleus | 78.29 | 88.15 |
TraesCS7B01G394900.1 | Wheat | nucleus | 82.24 | 88.03 |
GSMUA_Achr9P04060_001 | Banana | nucleus | 67.11 | 87.18 |
TraesCS7B01G405800.1 | Wheat | nucleus | 79.61 | 87.05 |
TraesCS4B01G054200.1 | Wheat | nucleus | 86.84 | 86.84 |
Zm00001d007084_P001 | Maize | plastid | 86.84 | 86.84 |
TraesCS3B01G390000.1 | Wheat | nucleus | 76.97 | 86.03 |
TraesCS3B01G390100.1 | Wheat | nucleus | 76.32 | 85.93 |
TraesCS4B01G275400.1 | Wheat | nucleus | 86.84 | 85.71 |
TraesCS6B01G084900.1 | Wheat | nucleus | 86.84 | 85.71 |
TraesCS1B01G192500.1 | Wheat | nucleus | 86.18 | 85.62 |
TraesCS5B01G058200.1 | Wheat | nucleus | 89.47 | 85.53 |
TraesCS5B01G064900.1 | Wheat | nucleus, unclear | 89.47 | 85.53 |
TraesCS1B01G244900.1 | Wheat | nucleus | 85.53 | 85.53 |
TraesCS1B01G245300.1 | Wheat | nucleus | 85.53 | 85.53 |
TraesCS4B01G204400.1 | Wheat | nucleus | 83.55 | 85.23 |
Zm00001d051591_P001 | Maize | plastid | 86.18 | 85.06 |
TraesCS5B01G389100.1 | Wheat | nucleus | 82.89 | 82.89 |
KRH26542 | Soybean | nucleus | 73.03 | 82.84 |
KRH22818 | Soybean | nucleus | 72.37 | 82.71 |
AT2G37470.1 | Thale cress | nucleus | 75.0 | 82.61 |
Bra038267.1-P | Field mustard | nucleus | 74.34 | 82.48 |
TraesCS1B01G294500.1 | Wheat | nucleus | 80.26 | 82.43 |
KRG95819 | Soybean | nucleus | 74.34 | 81.88 |
KRH67549 | Soybean | nucleus | 74.34 | 81.88 |
KRH34681 | Soybean | nucleus | 73.68 | 81.75 |
HORVU1Hr1G078480.6 | Barley | nucleus | 96.71 | 81.67 |
HORVU1Hr1G078530.3 | Barley | nucleus | 96.71 | 81.67 |
PGSC0003DMT400077939 | Potato | nucleus | 78.29 | 81.51 |
Solyc06g075800.1.1 | Tomato | nucleus | 78.29 | 81.51 |
Bra007018.1-P | Field mustard | nucleus | 73.68 | 81.16 |
Bra039810.1-P | Field mustard | nucleus | 73.68 | 81.16 |
KRG92106 | Soybean | nucleus | 72.37 | 80.88 |
KRH19721 | Soybean | nucleus | 73.68 | 80.58 |
KRH29833 | Soybean | nucleus | 75.66 | 80.42 |
PGSC0003DMT400043578 | Potato | nucleus | 74.34 | 80.14 |
Solyc03g071620.1.1 | Tomato | nucleus | 74.34 | 80.14 |
AT3G46030.1 | Thale cress | nucleus | 76.32 | 80.0 |
Bra003150.1-P | Field mustard | nucleus | 72.37 | 79.71 |
AT5G02570.1 | Thale cress | nucleus | 69.08 | 79.55 |
AT3G53650.1 | Thale cress | nucleus | 71.71 | 78.99 |
Bra020275.1-P | Field mustard | nucleus | 73.68 | 78.87 |
Solyc06g074790.1.1 | Tomato | nucleus | 73.68 | 78.87 |
Bra006685.1-P | Field mustard | nucleus | 73.03 | 78.72 |
Bra006639.1-P | Field mustard | nucleus | 74.34 | 78.47 |
PGSC0003DMT400018456 | Potato | nucleus | 73.03 | 78.17 |
PGSC0003DMT400070383 | Potato | nucleus | 73.03 | 78.17 |
VIT_06s0004g04230.t01 | Wine grape | nucleus | 75.0 | 78.08 |
Bra002436.1-P | Field mustard | nucleus | 72.37 | 78.01 |
Bra002520.1-P | Field mustard | nucleus | 76.97 | 78.0 |
AT3G09480.1 | Thale cress | nucleus | 64.47 | 77.78 |
PGSC0003DMT400070382 | Potato | nucleus | 73.68 | 77.78 |
KRH29831 | Soybean | nucleus | 75.66 | 77.7 |
KRH29832 | Soybean | nucleus | 75.66 | 77.7 |
KRH29836 | Soybean | nucleus | 75.66 | 77.7 |
VIT_06s0004g04250.t01 | Wine grape | nucleus | 75.66 | 77.7 |
GSMUA_Achr2P19080_001 | Banana | nucleus | 73.03 | 77.62 |
PGSC0003DMT400074994 | Potato | nucleus | 75.0 | 77.55 |
Solyc06g005390.1.1 | Tomato | nucleus | 75.0 | 77.55 |
Solyc11g007930.1.1 | Tomato | nucleus | 70.39 | 77.54 |
AT5G22880.1 | Thale cress | nucleus | 73.68 | 77.24 |
VIT_13s0019g05370.t01 | Wine grape | nucleus | 73.68 | 77.24 |
KRH24830 | Soybean | nucleus | 75.66 | 77.18 |
KRH24831 | Soybean | nucleus | 75.66 | 77.18 |
KRH24833 | Soybean | nucleus | 75.66 | 77.18 |
Solyc11g066430.1.1 | Tomato | nucleus | 71.05 | 77.14 |
PGSC0003DMT400060096 | Potato | nucleus | 74.34 | 76.87 |
Solyc02g038690.1.1 | Tomato | nucleus | 67.76 | 76.87 |
TraesCS3B01G390300.1 | Wheat | nucleus | 67.76 | 76.87 |
AT2G28720.1 | Thale cress | nucleus | 76.32 | 76.82 |
AT3G45980.1 | Thale cress | nucleus | 75.66 | 76.67 |
AT5G59910.1 | Thale cress | nucleus | 75.66 | 76.67 |
Solyc11g007920.1.1 | Tomato | nucleus | 72.37 | 76.39 |
AT1G07790.1 | Thale cress | nucleus | 74.34 | 76.35 |
Solyc05g055440.1.1 | Tomato | nucleus | 73.68 | 76.19 |
PGSC0003DMT400001108 | Potato | nucleus | 71.05 | 76.06 |
Bra035677.1-P | Field mustard | nucleus | 74.34 | 75.84 |
PGSC0003DMT400022074 | Potato | nucleus | 71.71 | 75.69 |
PGSC0003DMT400022099 | Potato | nucleus | 71.71 | 75.69 |
Solyc12g013510.1.1 | Tomato | nucleus | 69.08 | 75.54 |
PGSC0003DMT400018455 | Potato | nucleus | 71.05 | 75.52 |
Bra011930.1-P | Field mustard | nucleus | 73.68 | 75.17 |
Solyc06g074780.1.1 | Tomato | nucleus | 70.39 | 74.83 |
VIT_06s0004g04300.t01 | Wine grape | nucleus | 74.34 | 74.34 |
GSMUA_Achr7P15260_001 | Banana | nucleus | 73.03 | 73.03 |
Bra000483.1-P | Field mustard | nucleus | 73.68 | 72.26 |
PGSC0003DMT400074020 | Potato | nucleus | 61.18 | 68.89 |
CDX71015 | Canola | nucleus | 28.29 | 65.15 |
Solyc10g044580.1.1 | Tomato | nucleus | 53.29 | 60.0 |
TraesCS6B01G081700.1 | Wheat | nucleus | 53.95 | 50.0 |
VIT_06s0004g04240.t01 | Wine grape | nucleus | 75.0 | 49.57 |
GSMUA_Achr6P33320_001 | Banana | nucleus | 65.13 | 47.83 |
PGSC0003DMT400074018 | Potato | nucleus | 53.29 | 21.26 |
TraesCS4B01G002800.1 | Wheat | nucleus | 42.76 | 21.17 |
Protein Annotations
Gene3D:1.10.20.10 | MapMan:12.1.3 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0046982 |
InterPro:Histone-fold | InterPro:Histone_H2A/H2B/H3 | InterPro:Histone_H2B | InterPro:IPR009072 | PFAM:PF00125 | PRINTS:PR00621 |
ScanProsite:PS00357 | PANTHER:PTHR23428 | PANTHER:PTHR23428:SF72 | SMART:SM00427 | SUPFAM:SSF47113 | EnsemblPlantsGene:TraesCS6B01G376900 |
EnsemblPlants:TraesCS6B01G376900.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr6B:+:651990853..651991311
Molecular Weight (calculated)
16386.0 Da
IEP (calculated)
10.906
GRAVY (calculated)
-0.678
Length
152 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPKADKKPA AESKVEKAAE KTPAGKKPKA EKRVPAGKTA AKEGGEGKTR GRKKGSKAKK SVETYKIYIF KVLKQVHPDV GISSKAMSIM NSFINDIFEK
101: LAGESAKLAR YNKKPTITSR EIQTSVRLVL PGELAKHAVS EGTKAVTKFT SS
101: LAGESAKLAR YNKKPTITSR EIQTSVRLVL PGELAKHAVS EGTKAVTKFT SS
001: MAPKAEKKPA EKKPVEEKSK AEKAPAEKKP KAGKKLPKEA GAGGDKKKKM KKKSVETYKI YIFKVLKQVH PDIGISSKAM GIMNSFINDI FEKLASESSK
101: LARYNKKPTI TSREIQTAVR LVLPGELAKH AVSEGTKAVT KFTSS
101: LARYNKKPTI TSREIQTAVR LVLPGELAKH AVSEGTKAVT KFTSS
Arabidopsis Description
HTB11Histone H2B [Source:UniProtKB/TrEMBL;Acc:A0A178VGU6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.