Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- vacuole 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
25464976
nucleus: 28394025 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400060096 | Potato | nucleus | 97.96 | 97.96 |
| Solyc11g007920.1.1 | Tomato | nucleus | 95.24 | 97.22 |
| Solyc03g071620.1.1 | Tomato | nucleus | 91.84 | 95.74 |
| GSMUA_Achr8P20900_001 | Banana | nucleus | 42.86 | 95.45 |
| GSMUA_Achr9P04060_001 | Banana | nucleus | 74.15 | 93.16 |
| VIT_06s0004g04230.t01 | Wine grape | nucleus | 91.84 | 92.47 |
| GSMUA_Achr10P... | Banana | nucleus | 41.5 | 92.42 |
| Solyc12g013510.1.1 | Tomato | nucleus | 87.07 | 92.09 |
| Solyc11g007930.1.1 | Tomato | nucleus | 86.39 | 92.03 |
| TraesCS6B01G055300.1 | Wheat | nucleus | 59.86 | 91.67 |
| TraesCS6B01G055500.1 | Wheat | nucleus | 59.86 | 91.67 |
| VIT_06s0004g04250.t01 | Wine grape | nucleus | 91.84 | 91.22 |
| TraesCS6D01G046500.1 | Wheat | nucleus | 40.82 | 90.91 |
| Solyc06g074790.1.1 | Tomato | nucleus | 87.76 | 90.85 |
| TraesCS7B01G394800.1 | Wheat | nucleus | 59.86 | 90.72 |
| TraesCS3A01G075800.1 | Wheat | nucleus | 59.18 | 90.62 |
| Solyc06g075800.1.1 | Tomato | nucleus | 89.8 | 90.41 |
| Solyc02g038690.1.1 | Tomato | nucleus | 82.31 | 90.3 |
| Solyc11g066430.1.1 | Tomato | nucleus | 85.71 | 90.0 |
| VIT_06s0004g04300.t01 | Wine grape | nucleus | 92.52 | 89.47 |
| KRH29831 | Soybean | nucleus | 89.8 | 89.19 |
| KRH29832 | Soybean | nucleus | 89.8 | 89.19 |
| KRH29836 | Soybean | nucleus | 89.8 | 89.19 |
| KRH29833 | Soybean | nucleus | 86.39 | 88.81 |
| KRH24831 | Soybean | nucleus | 89.8 | 88.59 |
| KRH24833 | Soybean | nucleus | 89.8 | 88.59 |
| Solyc06g074780.1.1 | Tomato | nucleus | 85.71 | 88.11 |
| KRH24830 | Soybean | nucleus | 89.12 | 87.92 |
| TraesCS3A01G357500.1 | Wheat | nucleus | 80.95 | 87.5 |
| TraesCS3D01G351300.1 | Wheat | nucleus | 80.95 | 87.5 |
| TraesCS3D01G351400.1 | Wheat | nucleus | 80.95 | 87.5 |
| TraesCS7B01G394500.1 | Wheat | nucleus | 57.14 | 87.5 |
| Solyc06g005390.1.1 | Tomato | nucleus | 87.07 | 87.07 |
| TraesCS3A01G357400.1 | Wheat | nucleus | 81.63 | 86.96 |
| Os05t0460475-00 | Rice | nucleus | 62.59 | 86.79 |
| TraesCS3B01G390000.1 | Wheat | nucleus | 80.27 | 86.76 |
| TraesCS3B01G390100.1 | Wheat | nucleus | 79.59 | 86.67 |
| TraesCS2A01G312400.1 | Wheat | nucleus | 69.39 | 86.44 |
| GSMUA_Achr2P19080_001 | Banana | nucleus | 83.67 | 86.01 |
| HORVU6Hr1G015790.1 | Barley | nucleus | 78.23 | 85.19 |
| Os01t0839500-00 | Rice | nucleus | 80.27 | 84.89 |
| TraesCS6A01G086400.1 | Wheat | nucleus | 77.55 | 84.44 |
| TraesCS6B01G116000.1 | Wheat | nucleus | 77.55 | 84.44 |
| TraesCSU01G077200.1 | Wheat | nucleus | 77.55 | 84.44 |
| EES03855 | Sorghum | nucleus | 78.23 | 83.94 |
| Zm00001d012423_P001 | Maize | plastid | 78.23 | 83.94 |
| TraesCS3D01G099000.1 | Wheat | nucleus | 77.55 | 83.82 |
| TraesCS6D01G046200.1 | Wheat | nucleus, unclear | 77.55 | 83.82 |
| TraesCS3B01G114600.1 | Wheat | nucleus | 76.87 | 83.7 |
| TraesCS6A01G086200.1 | Wheat | nucleus | 76.87 | 83.7 |
| TraesCSU01G077400.1 | Wheat | nucleus | 76.87 | 83.7 |
| Zm00001d042930_P001 | Maize | plastid | 77.55 | 83.21 |
| TraesCS1B01G294500.1 | Wheat | nucleus | 83.67 | 83.11 |
| TraesCS4D01G205300.1 | Wheat | nucleus | 80.27 | 83.1 |
| TraesCS3D01G075900.1 | Wheat | nucleus | 76.87 | 83.09 |
| TraesCS3B01G114400.1 | Wheat | nucleus | 76.19 | 82.96 |
| OQU92807 | Sorghum | nucleus | 82.99 | 82.43 |
| TraesCS6D01G046600.1 | Wheat | nucleus | 76.19 | 82.35 |
| EES18353 | Sorghum | nucleus | 82.31 | 82.31 |
| TraesCS7B01G405800.1 | Wheat | nucleus | 77.55 | 82.01 |
| Zm00001d044247_P001 | Maize | plastid | 82.31 | 81.76 |
| TraesCS6A01G040500.1 | Wheat | nucleus | 75.51 | 81.62 |
| Os03t0279000-00 | Rice | nucleus | 84.35 | 81.58 |
| EES00304 | Sorghum | nucleus | 82.31 | 81.21 |
| TraesCS4A01G099900.1 | Wheat | nucleus | 82.31 | 81.21 |
| Zm00001d039821_P001 | Maize | plastid | 82.31 | 81.21 |
| TraesCS7A01G491000.1 | Wheat | nucleus | 76.19 | 81.16 |
| TraesCS7B01G394700.1 | Wheat | nucleus | 76.19 | 81.16 |
| TraesCS7A01G491100.1 | Wheat | extracellular, nucleus, unclear | 78.23 | 80.99 |
| TraesCS7B01G394900.1 | Wheat | nucleus | 78.23 | 80.99 |
| TraesCS7D01G477300.1 | Wheat | nucleus | 78.23 | 80.99 |
| TraesCS5A01G384300.1 | Wheat | nucleus | 83.67 | 80.92 |
| TraesCS1A01G190400.1 | Wheat | nucleus | 76.87 | 80.71 |
| EES00399 | Sorghum | nucleus | 82.31 | 80.67 |
| EES00305 | Sorghum | nucleus | 81.63 | 80.54 |
| TraesCS4B01G204400.1 | Wheat | nucleus | 81.63 | 80.54 |
| HORVU0Hr1G006420.1 | Barley | nucleus | 75.51 | 80.43 |
| HORVU3Hr1G034060.1 | Barley | nucleus | 75.51 | 80.43 |
| TraesCS3D01G342400.1 | Wheat | nucleus | 75.51 | 80.43 |
| TraesCS7B01G394600.1 | Wheat | nucleus | 75.51 | 80.43 |
| TraesCSU01G169300.1 | Wheat | nucleus | 80.95 | 80.41 |
| TraesCSU01G169400.1 | Wheat | nucleus | 80.95 | 80.41 |
| TraesCSU01G169500.1 | Wheat | nucleus | 80.95 | 80.41 |
| TraesCSU01G169700.1 | Wheat | nucleus | 80.95 | 80.41 |
| TraesCSU01G169800.1 | Wheat | nucleus | 80.95 | 80.41 |
| TraesCSU01G169900.1 | Wheat | nucleus | 80.95 | 80.41 |
| TraesCSU01G170400.1 | Wheat | nucleus | 80.95 | 80.41 |
| TraesCSU01G170500.1 | Wheat | nucleus | 80.95 | 80.41 |
| TraesCSU01G170600.1 | Wheat | nucleus | 80.95 | 80.41 |
| TraesCSU01G170700.1 | Wheat | nucleus | 80.95 | 80.41 |
| TraesCSU01G170900.1 | Wheat | nucleus | 80.95 | 80.41 |
| TraesCSU01G171000.1 | Wheat | nucleus | 80.95 | 80.41 |
| TraesCSU01G171100.1 | Wheat | nucleus | 80.95 | 80.41 |
| TraesCS7D01G477400.1 | Wheat | nucleus | 77.55 | 80.28 |
| TraesCS2D01G310800.1 | Wheat | nucleus | 82.99 | 80.26 |
| TraesCS5B01G389100.1 | Wheat | nucleus | 82.99 | 80.26 |
| TraesCS6D01G046400.1 | Wheat | nucleus | 76.19 | 80.0 |
| TraesCS6A01G040400.1 | Wheat | nucleus | 75.51 | 79.86 |
| TraesCS7A01G490900.1 | Wheat | nucleus | 74.83 | 79.71 |
| TraesCS7B01G394100.1 | Wheat | nucleus | 74.83 | 79.71 |
| TraesCS7B01G394400.1 | Wheat | nucleus | 74.83 | 79.71 |
| TraesCS4A01G260400.1 | Wheat | nucleus | 82.31 | 79.61 |
| TraesCS4D01G054200.1 | Wheat | nucleus | 82.31 | 79.61 |
| TraesCS4A01G030500.1 | Wheat | nucleus | 76.19 | 79.43 |
| Zm00001d011236_P001 | Maize | plastid | 80.95 | 79.33 |
| TraesCS7D01G485700.1 | Wheat | nucleus | 74.83 | 79.14 |
| OQU87075 | Sorghum | nucleus | 82.31 | 79.08 |
| TraesCS6A01G040200.1 | Wheat | nucleus | 74.15 | 78.99 |
| EES15460 | Sorghum | nucleus | 81.63 | 78.95 |
| TraesCS3D01G088900.1 | Wheat | nucleus | 81.63 | 78.95 |
| TraesCS3D01G351500.1 | Wheat | nucleus | 65.99 | 78.86 |
| Zm00001d020580_P001 | Maize | plastid | 80.95 | 78.81 |
| EER96770 | Sorghum | nucleus | 81.63 | 78.43 |
| HORVU1Hr1G049920.1 | Barley | nucleus | 81.63 | 78.43 |
| GSMUA_Achr7P15260_001 | Banana | nucleus | 80.95 | 78.29 |
| TraesCS1B01G244900.1 | Wheat | nucleus | 80.95 | 78.29 |
| TraesCS1B01G245300.1 | Wheat | nucleus | 80.95 | 78.29 |
| Zm00001d007084_P001 | Maize | plastid | 80.95 | 78.29 |
| HORVU6Hr1G087190.1 | Barley | nucleus | 79.59 | 78.0 |
| Os01t0153100-00 | Rice | nucleus | 80.95 | 77.78 |
| TraesCS1B01G192500.1 | Wheat | nucleus | 80.95 | 77.78 |
| TraesCS1B01G357600.1 | Wheat | nucleus | 76.19 | 77.78 |
| TraesCS5D01G020000.1 | Wheat | nucleus | 82.99 | 77.71 |
| Os05t0574300-00 | Rice | nucleus | 80.27 | 77.63 |
| TraesCS1A01G228700.1 | Wheat | nucleus | 80.27 | 77.63 |
| TraesCS1D01G233300.1 | Wheat | nucleus | 80.27 | 77.63 |
| TraesCS4B01G054200.1 | Wheat | nucleus | 80.27 | 77.63 |
| Zm00001d005789_P001 | Maize | plastid | 80.27 | 77.63 |
| EER97675 | Sorghum | nucleus | 79.59 | 77.48 |
| TraesCS3A01G088800.1 | Wheat | nucleus | 79.59 | 77.48 |
| HORVU7Hr1G110290.1 | Barley | nucleus | 53.74 | 77.45 |
| Zm00001d025913_P001 | Maize | plastid | 78.91 | 77.33 |
| Zm00001d032070_P001 | Maize | plastid | 78.91 | 77.33 |
| Zm00001d050100_P001 | Maize | plastid | 78.91 | 77.33 |
| TraesCS4A01G030400.1 | Wheat | nucleus | 80.95 | 77.27 |
| TraesCS4B01G275400.1 | Wheat | nucleus | 80.95 | 77.27 |
| Os01t0149600-01 | Rice | nucleus | 80.27 | 77.12 |
| Os01t0152300-00 | Rice | nucleus | 80.27 | 77.12 |
| Os01t0152900-00 | Rice | nucleus | 80.27 | 77.12 |
| TraesCS6A01G034500.1 | Wheat | nucleus | 75.51 | 77.08 |
| TraesCS6A01G035000.1 | Wheat | nucleus | 75.51 | 77.08 |
| TraesCS6B01G049300.1 | Wheat | nucleus | 75.51 | 77.08 |
| EES15092 | Sorghum | nucleus | 78.91 | 76.82 |
| EES07386 | Sorghum | nucleus | 80.95 | 76.77 |
| Zm00001d051591_P001 | Maize | plastid | 80.27 | 76.62 |
| TraesCS6B01G048500.1 | Wheat | unclear | 75.51 | 76.55 |
| TraesCS3A01G102500.1 | Wheat | nucleus | 74.83 | 76.39 |
| TraesCS6B01G048800.1 | Wheat | nucleus | 74.83 | 76.39 |
| TraesCS6B01G049100.1 | Wheat | nucleus | 74.83 | 76.39 |
| TraesCS6B01G082600.1 | Wheat | nucleus | 74.83 | 76.39 |
| TraesCS5A01G051900.1 | Wheat | nucleus | 80.95 | 76.28 |
| TraesCS5B01G058200.1 | Wheat | nucleus | 82.31 | 76.1 |
| TraesCS5B01G064900.1 | Wheat | nucleus, unclear | 82.31 | 76.1 |
| TraesCS1D01G396600.1 | Wheat | golgi, nucleus, unclear | 77.55 | 76.0 |
| TraesCS6D01G040600.1 | Wheat | nucleus | 74.83 | 75.86 |
| TraesCS1B01G416600.1 | Wheat | nucleus | 77.55 | 75.5 |
| Os01t0153300-00 | Rice | nucleus | 79.59 | 75.48 |
| TraesCS3B01G390300.1 | Wheat | nucleus | 68.71 | 75.37 |
| TraesCS6D01G040200.1 | Wheat | nucleus | 74.15 | 75.17 |
| TraesCS1A01G361600.1 | Wheat | nucleus | 78.23 | 75.16 |
| TraesCS1A01G367900.1 | Wheat | nucleus | 78.23 | 75.16 |
| TraesCS1A01G368000.1 | Wheat | nucleus | 78.23 | 75.16 |
| TraesCS1A01G388600.1 | Wheat | nucleus | 78.23 | 75.16 |
| TraesCS1B01G386200.1 | Wheat | nucleus | 78.23 | 75.16 |
| TraesCS1B01G386400.1 | Wheat | nucleus | 78.23 | 75.16 |
| TraesCS1B01G386700.1 | Wheat | nucleus | 78.23 | 75.16 |
| TraesCS1D01G194600.1 | Wheat | nucleus | 78.23 | 75.16 |
| TraesCS1D01G366300.1 | Wheat | nucleus | 78.23 | 75.16 |
| TraesCS1D01G373800.1 | Wheat | nucleus | 78.23 | 75.16 |
| TraesCS1D01G373900.1 | Wheat | nucleus | 78.23 | 75.16 |
| TraesCS1B01G378300.1 | Wheat | nucleus | 77.55 | 74.51 |
| TraesCS1B01G386500.1 | Wheat | nucleus | 77.55 | 74.51 |
| TraesCS1B01G386600.1 | Wheat | nucleus | 77.55 | 74.51 |
| TraesCS6B01G084900.1 | Wheat | nucleus | 77.55 | 74.03 |
| TraesCS6B01G376900.1 | Wheat | nucleus | 76.19 | 73.68 |
| HORVU6Hr1G005950.2 | Barley | nucleus | 77.55 | 73.55 |
| HORVU7Hr1G110130.1 | Barley | nucleus | 58.5 | 72.88 |
| TraesCS6D01G326800.1 | Wheat | nucleus, unclear | 76.19 | 72.73 |
| HORVU6Hr1G008320.1 | Barley | nucleus | 77.55 | 72.61 |
| TraesCS1D01G232900.1 | Wheat | nucleus | 77.55 | 72.61 |
| TraesCSU01G081100.1 | Wheat | nucleus | 75.51 | 72.08 |
| HORVU7Hr1G110330.2 | Barley | nucleus | 57.14 | 70.59 |
| HORVU6Hr1G015760.1 | Barley | nucleus, plastid | 78.23 | 70.55 |
| Solyc10g044580.1.1 | Tomato | nucleus | 64.63 | 70.37 |
| HORVU3Hr1G013530.1 | Barley | nucleus | 78.23 | 70.12 |
| HORVU1Hr1G072190.4 | Barley | nucleus | 83.67 | 69.89 |
| HORVU1Hr1G091370.1 | Barley | nucleus | 75.51 | 69.81 |
| TraesCS5D01G393900.1 | Wheat | nucleus | 77.55 | 69.51 |
| HORVU4Hr1G070240.1 | Barley | nucleus | 78.23 | 69.28 |
| HORVU7Hr1G110190.1 | Barley | nucleus | 61.9 | 68.94 |
| HORVU7Hr1G110170.1 | Barley | nucleus | 76.19 | 68.71 |
| HORVU4Hr1G009040.2 | Barley | nucleus | 79.59 | 68.02 |
| HORVU3Hr1G013680.1 | Barley | nucleus | 77.55 | 67.06 |
| HORVU6Hr1G006110.1 | Barley | nucleus, plastid | 53.06 | 66.67 |
| HORVU2Hr1G077630.1 | Barley | nucleus | 81.63 | 66.3 |
| HORVU1Hr1G058500.1 | Barley | nucleus | 81.63 | 65.57 |
| HORVU4Hr1G073130.1 | Barley | nucleus, plastid | 80.95 | 65.03 |
| HORVU1Hr1G085540.1 | Barley | nucleus | 78.91 | 64.8 |
| HORVU7Hr1G110090.1 | Barley | nucleus, plastid | 76.19 | 64.74 |
| HORVU1Hr1G078480.6 | Barley | nucleus | 78.23 | 63.89 |
| HORVU1Hr1G078530.3 | Barley | nucleus | 78.23 | 63.89 |
| HORVU6Hr1G083110.1 | Barley | nucleus | 72.11 | 61.99 |
| VIT_06s0004g04240.t01 | Wine grape | nucleus | 92.52 | 59.13 |
| HORVU3Hr1G015810.1 | Barley | nucleus, plastid | 82.31 | 57.89 |
| HORVU5Hr1G094500.1 | Barley | nucleus, plastid | 82.31 | 57.08 |
| HORVU1Hr1G056530.1 | Barley | nucleus, plastid | 80.95 | 56.4 |
| Os08t0490900-00 | Rice | nucleus | 80.95 | 56.13 |
| HORVU3Hr1G086580.1 | Barley | nucleus, plastid | 67.35 | 53.8 |
| HORVU3Hr1G086610.2 | Barley | nucleus | 74.83 | 52.38 |
| GSMUA_Achr6P33320_001 | Banana | nucleus | 72.79 | 51.69 |
| Zm00001d048491_P001 | Maize | plastid | 80.95 | 50.0 |
| HORVU1Hr1G066130.1 | Barley | nucleus | 82.31 | 49.79 |
| TraesCS6B01G081700.1 | Wheat | nucleus | 53.74 | 48.17 |
| TraesCS6D01G063200.1 | Wheat | nucleus | 55.78 | 41.41 |
| TraesCS6A01G061400.1 | Wheat | nucleus | 54.42 | 38.28 |
| Solyc06g074750.1.1 | Tomato | mitochondrion, nucleus | 53.06 | 27.56 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.3 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005694 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:Histone_H2A/H2B/H3 | InterPro:Histone_H2B | InterPro:IPR009072 |
| UniProt:K4C2M0 | PFAM:PF00125 | PRINTS:PR00621 | ScanProsite:PS00357 | PANTHER:PTHR23428 | PANTHER:PTHR23428:SF106 |
| SMART:SM00427 | SUPFAM:SSF47113 | EnsemblPlantsGene:Solyc05g055440.1 | EnsemblPlants:Solyc05g055440.1.1 | UniParc:UPI0002767090 | SEG:seg |
Description
Histone H2B [Source:UniProtKB/TrEMBL;Acc:K4C2M0]
Coordinates
chr5:-:65090772..65091215
Molecular Weight (calculated)
16092.7 Da
IEP (calculated)
10.851
GRAVY (calculated)
-0.697
Length
147 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPKAEKKPA EKKPAAEKTP LAEKSPAEKK PKAGKKLPKD SSAAAGDKKK KRSKKAVETY KIYIFKVLKQ VHPDIGISSK AMGIMNSFIN DIFEKLAQES
101: SRLARYNKKP TITSREIQTA VRLVLPGELA KHAVSEGTKA VTKFTSS
101: SRLARYNKKP TITSREIQTA VRLVLPGELA KHAVSEGTKA VTKFTSS
001: MAPRAEKKPA EKKPAAEKPV EEKSKAEKAP AEKKPKAGKK LPKEAGAGGD KKKKMKKKSV ETYKIYIFKV LKQVHPDIGI SSKAMGIMNS FINDIFEKLA
101: SESSKLARYN KKPTITSREI QTAVRLVLPG ELAKHAVSEG TKAVTKFTSS
101: SESSKLARYN KKPTITSREI QTAVRLVLPG ELAKHAVSEG TKAVTKFTSS
Arabidopsis Description
H2BHistone H2B [Source:UniProtKB/TrEMBL;Acc:A0A178V9F6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.