CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042930_P001	Maize	plastid	99.27	99.27
Zm00001d012423_P001	Maize	plastid	99.27	99.27
GSMUA_Achr9P04060_001	Banana	nucleus	77.37	90.6
OQU92807	Sorghum	nucleus	94.89	87.84
EES15460	Sorghum	nucleus	96.35	86.84
EES00399	Sorghum	nucleus	94.89	86.67
EES00304	Sorghum	nucleus	94.16	86.58
EES00305	Sorghum	nucleus	93.43	85.91
KRH26542	Soybean	nucleus	83.94	85.82
KRH22818	Soybean	nucleus	83.21	85.71
EER96770	Sorghum	nucleus	94.16	84.31
EES18353	Sorghum	nucleus	89.78	83.67
KRH19721	Soybean	nucleus	84.67	83.45
OQU87075	Sorghum	nucleus	92.7	83.01
EER97675	Sorghum	nucleus	91.24	82.78
EES15092	Sorghum	nucleus	91.24	82.78
Bra007018.1-P	Field mustard	nucleus	83.21	82.61
KRH67549	Soybean	nucleus	83.21	82.61
KRG95819	Soybean	nucleus	83.21	82.61
Bra039810.1-P	Field mustard	nucleus	83.21	82.61
EES07386	Sorghum	nucleus	93.43	82.58
KRG92106	Soybean	nucleus	81.75	82.35
PGSC0003DMT400077939	Potato	nucleus	87.59	82.19
AT2G37470.1	Thale cress	nucleus	82.48	81.88
AT5G02570.1	Thale cress	nucleus	78.83	81.82
KRH34681	Soybean	nucleus	81.75	81.75
PGSC0003DMT400043578	Potato	nucleus	83.94	81.56
Solyc06g075800.1.1	Tomato	nucleus	86.86	81.51
Bra003150.1-P	Field mustard	nucleus	81.75	81.16
GSMUA_Achr2P19080_001	Banana	nucleus	84.67	81.12
Bra038267.1-P	Field mustard	nucleus	81.02	81.02
Solyc03g071620.1.1	Tomato	nucleus	83.21	80.85
Bra002436.1-P	Field mustard	nucleus	83.21	80.85
Solyc11g066430.1.1	Tomato	nucleus	82.48	80.71
VIT_13s0019g05370.t01	Wine grape	nucleus	85.4	80.69
PGSC0003DMT400070382	Potato	nucleus	84.67	80.56
Bra006685.1-P	Field mustard	nucleus	82.48	80.14
VIT_06s0004g04230.t01	Wine grape	nucleus	85.4	80.14
AT5G59910.1	Thale cress	nucleus	87.59	80.0
AT3G46030.1	Thale cress	nucleus	84.67	80.0
KRH29831	Soybean	nucleus	86.13	79.73
KRH29832	Soybean	nucleus	86.13	79.73
KRH29836	Soybean	nucleus	86.13	79.73
PGSC0003DMT400070383	Potato	nucleus	82.48	79.58
Solyc06g074790.1.1	Tomato	nucleus	82.48	79.58
AT3G09480.1	Thale cress	nucleus	72.99	79.37
Bra002520.1-P	Field mustard	nucleus	86.86	79.33
KRH24831	Soybean	nucleus	86.13	79.19
KRH24833	Soybean	nucleus	86.13	79.19
Bra006639.1-P	Field mustard	nucleus	83.21	79.17
Solyc11g007920.1.1	Tomato	nucleus	83.21	79.17
VIT_06s0004g04250.t01	Wine grape	nucleus	85.4	79.05
KRH29833	Soybean	nucleus	82.48	79.02
AT3G53650.1	Thale cress	nucleus	79.56	78.99
Solyc11g007930.1.1	Tomato	nucleus	79.56	78.99
PGSC0003DMT400074994	Potato	nucleus	84.67	78.91
Solyc06g005390.1.1	Tomato	nucleus	84.67	78.91
PGSC0003DMT400060096	Potato	nucleus	84.67	78.91
PGSC0003DMT400001108	Potato	nucleus	81.75	78.87
AT3G45980.1	Thale cress	nucleus	86.13	78.67
AT5G22880.1	Thale cress	nucleus	83.21	78.62
KRH24830	Soybean	nucleus	85.4	78.52
Solyc05g055440.1.1	Tomato	nucleus	83.94	78.23
PGSC0003DMT400018456	Potato	nucleus	81.02	78.17
Bra020275.1-P	Field mustard	nucleus	81.02	78.17
AT2G28720.1	Thale cress	nucleus	86.13	78.15
Bra035677.1-P	Field mustard	nucleus	84.67	77.85
PGSC0003DMT400022074	Potato	nucleus	81.75	77.78
PGSC0003DMT400022099	Potato	nucleus	81.75	77.78
AT1G07790.1	Thale cress	nucleus	83.94	77.7
Solyc06g074780.1.1	Tomato	nucleus	81.02	77.62
PGSC0003DMT400018455	Potato	nucleus	81.02	77.62
Bra011930.1-P	Field mustard	nucleus	83.94	77.18
VIT_06s0004g04300.t01	Wine grape	nucleus	85.4	76.97
Solyc02g038690.1.1	Tomato	nucleus	75.18	76.87
Solyc12g013510.1.1	Tomato	nucleus	77.37	76.26
GSMUA_Achr7P15260_001	Banana	nucleus	83.94	75.66
Bra000483.1-P	Field mustard	nucleus	83.94	74.19
PGSC0003DMT400074020	Potato	nucleus	67.15	68.15
CDX71015	Canola	nucleus	32.12	66.67
Solyc10g044580.1.1	Tomato	nucleus	60.58	61.48
VIT_06s0004g04240.t01	Wine grape	nucleus	86.13	51.3
GSMUA_Achr6P33320_001	Banana	nucleus	75.18	49.76
EER98531	Sorghum	nucleus	48.18	22.07
PGSC0003DMT400074018	Potato	nucleus	56.93	20.47

Protein Annotations

Gene3D:1.10.20.10	MapMan:12.1.3	EntrezGene:8057774	UniProt:C5XP45	EnsemblPlants:EES03855	ProteinID:EES03855
ProteinID:EES03855.1	GO:GO:0000786	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694
GO:GO:0046982	InterPro:Histone-fold	InterPro:Histone_H2A/H2B/H3	InterPro:Histone_H2B	InterPro:IPR009072	PFAM:PF00125
PRINTS:PR00621	ScanProsite:PS00357	PANTHER:PTHR23428	PANTHER:PTHR23428:SF62	SMART:SM00427	EnsemblPlantsGene:SORBI_3003G350100
SUPFAM:SSF47113	unigene:Sbi.18250	UniParc:UPI00016FC91B	RefSeq:XP_002458735.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:-:66983843..66984520

Molecular Weight (calculated)

15153.6 Da

IEP (calculated)

10.766

GRAVY (calculated)

-0.740

Length

137 amino acids

Sequence
(BLAST)

001: MAPKAEKKPA EKKPAEEKAE KKPRAEKRVP GKEGGEKKGK KKAKKSVETY KIYIFKVLKQ VHPDIGISSK AMSIMNSFIN DIFEKLAAEA AKLARYNKKP
101: TITSREIQTS VRLVLPGELA KHAVSEGTKA VTKFTSS

Best Arabidopsis Sequence Match ( AT1G07790.1 )
(BLAST)

001: MAPRAEKKPA EKKTAAERPV EENKAAEKAP AEKKPKAGKK LPPKEAGDKK KKRSKKNVET YKIYIFKVLK QVHPDIGISS KAMGIMNSFI NDIFEKLAQE
101: SSKLARYNKK PTITSREIQT AVRLVLPGEL AKHAVSEGTK AVTKFTSS

Arabidopsis Description

HTB1Histone H2B.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQQ4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.