Factsheet for Zm00001d012423_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

extracellular: 20408568
plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES03855	Sorghum	nucleus	99.27	99.27
Zm00001d042930_P001	Maize	plastid	98.54	98.54
GSMUA_Achr9P04060_001	Banana	nucleus	77.37	90.6
Zm00001d044247_P001	Maize	plastid	94.89	87.84
Zm00001d039821_P001	Maize	plastid	94.16	86.58
KRH26542	Soybean	nucleus	83.94	85.82
KRH22818	Soybean	nucleus	83.21	85.71
Zm00001d011236_P001	Maize	plastid	93.43	85.33
Zm00001d020580_P001	Maize	plastid	93.43	84.77
Zm00001d032070_P001	Maize	plastid	92.7	84.67
Zm00001d025913_P001	Maize	plastid	92.7	84.67
Zm00001d050100_P001	Maize	plastid	92.7	84.67
Zm00001d007084_P001	Maize	plastid	92.7	83.55
KRH19721	Soybean	nucleus	84.67	83.45
Zm00001d051591_P001	Maize	plastid	93.43	83.12
Zm00001d005789_P001	Maize	plastid	91.97	82.89
Bra039810.1-P	Field mustard	nucleus	83.21	82.61
KRH67549	Soybean	nucleus	83.21	82.61
KRG95819	Soybean	nucleus	83.21	82.61
Bra007018.1-P	Field mustard	nucleus	83.21	82.61
KRG92106	Soybean	nucleus	81.75	82.35
PGSC0003DMT400077939	Potato	nucleus	87.59	82.19
AT2G37470.1	Thale cress	nucleus	82.48	81.88
AT5G02570.1	Thale cress	nucleus	78.83	81.82
KRH34681	Soybean	nucleus	81.75	81.75
PGSC0003DMT400043578	Potato	nucleus	83.94	81.56
Solyc06g075800.1.1	Tomato	nucleus	86.86	81.51
Bra003150.1-P	Field mustard	nucleus	81.75	81.16
GSMUA_Achr2P19080_001	Banana	nucleus	84.67	81.12
Bra038267.1-P	Field mustard	nucleus	81.02	81.02
Bra002436.1-P	Field mustard	nucleus	83.21	80.85
Solyc03g071620.1.1	Tomato	nucleus	83.21	80.85
Solyc11g066430.1.1	Tomato	nucleus	82.48	80.71
VIT_13s0019g05370.t01	Wine grape	nucleus	85.4	80.69
PGSC0003DMT400070382	Potato	nucleus	84.67	80.56
Bra006685.1-P	Field mustard	nucleus	82.48	80.14
VIT_06s0004g04230.t01	Wine grape	nucleus	85.4	80.14
AT3G46030.1	Thale cress	nucleus	84.67	80.0
AT5G59910.1	Thale cress	nucleus	87.59	80.0
KRH29832	Soybean	nucleus	86.13	79.73
KRH29831	Soybean	nucleus	86.13	79.73
KRH29836	Soybean	nucleus	86.13	79.73
Solyc06g074790.1.1	Tomato	nucleus	82.48	79.58
PGSC0003DMT400070383	Potato	nucleus	82.48	79.58
AT3G09480.1	Thale cress	nucleus	72.99	79.37
Bra002520.1-P	Field mustard	nucleus	86.86	79.33
KRH24833	Soybean	nucleus	86.13	79.19
KRH24831	Soybean	nucleus	86.13	79.19
Bra006639.1-P	Field mustard	nucleus	83.21	79.17
Solyc11g007920.1.1	Tomato	nucleus	83.21	79.17
VIT_06s0004g04250.t01	Wine grape	nucleus	85.4	79.05
KRH29833	Soybean	nucleus	82.48	79.02
Solyc11g007930.1.1	Tomato	nucleus	79.56	78.99
AT3G53650.1	Thale cress	nucleus	79.56	78.99
PGSC0003DMT400060096	Potato	nucleus	84.67	78.91
PGSC0003DMT400074994	Potato	nucleus	84.67	78.91
Solyc06g005390.1.1	Tomato	nucleus	84.67	78.91
PGSC0003DMT400001108	Potato	nucleus	81.75	78.87
AT3G45980.1	Thale cress	nucleus	86.13	78.67
AT5G22880.1	Thale cress	nucleus	83.21	78.62
KRH24830	Soybean	nucleus	85.4	78.52
Solyc05g055440.1.1	Tomato	nucleus	83.94	78.23
Bra020275.1-P	Field mustard	nucleus	81.02	78.17
PGSC0003DMT400018456	Potato	nucleus	81.02	78.17
AT2G28720.1	Thale cress	nucleus	86.13	78.15
Bra035677.1-P	Field mustard	nucleus	84.67	77.85
PGSC0003DMT400022099	Potato	nucleus	81.75	77.78
PGSC0003DMT400022074	Potato	nucleus	81.75	77.78
AT1G07790.1	Thale cress	nucleus	83.94	77.7
PGSC0003DMT400018455	Potato	nucleus	81.02	77.62
Solyc06g074780.1.1	Tomato	nucleus	81.02	77.62
Bra011930.1-P	Field mustard	nucleus	83.94	77.18
VIT_06s0004g04300.t01	Wine grape	nucleus	85.4	76.97
Solyc02g038690.1.1	Tomato	nucleus	75.18	76.87
Solyc12g013510.1.1	Tomato	nucleus	77.37	76.26
GSMUA_Achr7P15260_001	Banana	nucleus	83.94	75.66
Bra000483.1-P	Field mustard	nucleus	83.94	74.19
PGSC0003DMT400074020	Potato	nucleus	67.15	68.15
CDX71015	Canola	nucleus	32.12	66.67
Solyc10g044580.1.1	Tomato	nucleus	60.58	61.48
Zm00001d048491_P001	Maize	plastid	95.62	55.04
VIT_06s0004g04240.t01	Wine grape	nucleus	86.13	51.3
GSMUA_Achr6P33320_001	Banana	nucleus	75.18	49.76
Zm00001d005322_P001	Maize	nucleus	43.07	22.52
PGSC0003DMT400074018	Potato	nucleus	56.93	20.47

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:100273745	MapMan:12.1.3	ProteinID:AQK99517.1	UniProt:B4FXA3	EMBL:BT041741
EMBL:EU965547	EMBL:EU976275	GO:GO:0000786	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005694	GO:GO:0046982	InterPro:Histone-fold	InterPro:Histone_H2A/H2B/H3	InterPro:Histone_H2B	InterPro:IPR009072
PFAM:PF00125	PRINTS:PR00621	ScanProsite:PS00357	PANTHER:PTHR23428	PANTHER:PTHR23428:SF108	SMART:SM00427
SUPFAM:SSF47113	UniParc:UPI00017B7925	EnsemblPlantsGene:Zm00001d012423	EnsemblPlants:Zm00001d012423_P001	EnsemblPlants:Zm00001d012423_T001	SEG:seg

Description

Histone H2B

Coordinates

chr8:+:174293032..174293445

Molecular Weight (calculated)

15183.6 Da

IEP (calculated)

10.766

GRAVY (calculated)

-0.743

Length

137 amino acids

Sequence
(BLAST)

001: MAPKAEKKPA EKKPAEEKAE KKPRAEKRVP SKEGGEKKGK KKAKKSVETY KIYIFKVLKQ VHPDIGISSK AMSIMNSFIN DIFEKLAAEA AKLARYNKKP
101: TITSREIQTS VRLVLPGELA KHAVSEGTKA VTKFTSS

Best Arabidopsis Sequence Match ( AT1G07790.1 )
(BLAST)

001: MAPRAEKKPA EKKTAAERPV EENKAAEKAP AEKKPKAGKK LPPKEAGDKK KKRSKKNVET YKIYIFKVLK QVHPDIGISS KAMGIMNSFI NDIFEKLAQE
101: SSKLARYNKK PTITSREIQT AVRLVLPGEL AKHAVSEGTK AVTKFTSS

Arabidopsis Description

HTB1Histone H2B.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQQ4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.