CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER96770	Sorghum	nucleus	95.42	95.42
Zm00001d020580_P001	Maize	plastid	93.46	94.7
Zm00001d005789_P001	Maize	plastid	93.46	94.08
EES00399	Sorghum	nucleus	92.16	94.0
EES00304	Sorghum	nucleus	91.5	93.96
EES00305	Sorghum	nucleus	90.85	93.29
EES15460	Sorghum	nucleus	92.16	92.76
EES03855	Sorghum	nucleus	83.01	92.7
GSMUA_Achr9P04060_001	Banana	nucleus	70.59	92.31
EES15092	Sorghum	nucleus	90.85	92.05
OQU92807	Sorghum	nucleus	88.89	91.89
EER97675	Sorghum	nucleus	88.89	90.07
EES07386	Sorghum	nucleus	90.2	89.03
KRH22818	Soybean	nucleus	75.16	86.47
EES18353	Sorghum	nucleus	83.01	86.39
Bra039810.1-P	Field mustard	nucleus	77.78	86.23
Bra007018.1-P	Field mustard	nucleus	77.78	86.23
KRH26542	Soybean	nucleus	75.16	85.82
PGSC0003DMT400043578	Potato	nucleus	79.08	85.82
Solyc03g071620.1.1	Tomato	nucleus	79.08	85.82
PGSC0003DMT400077939	Potato	nucleus	81.7	85.62
Solyc06g075800.1.1	Tomato	nucleus	81.7	85.62
KRH67549	Soybean	nucleus	77.12	85.51
KRG95819	Soybean	nucleus	77.12	85.51
KRG92106	Soybean	nucleus	75.82	85.29
KRH19721	Soybean	nucleus	77.12	84.89
KRH34681	Soybean	nucleus	75.82	84.67
Bra006685.1-P	Field mustard	nucleus	77.78	84.4
AT2G37470.1	Thale cress	nucleus	75.82	84.06
Bra003150.1-P	Field mustard	nucleus	75.82	84.06
Bra038267.1-P	Field mustard	nucleus	75.16	83.94
PGSC0003DMT400070383	Potato	nucleus	77.78	83.8
Solyc11g066430.1.1	Tomato	nucleus	76.47	83.57
AT3G46030.1	Thale cress	nucleus	79.08	83.45
AT5G02570.1	Thale cress	nucleus	71.9	83.33
GSMUA_Achr2P19080_001	Banana	nucleus	77.78	83.22
Solyc06g074790.1.1	Tomato	nucleus	77.12	83.1
PGSC0003DMT400060096	Potato	nucleus	79.74	82.99
VIT_06s0004g04230.t01	Wine grape	nucleus	79.08	82.88
Bra002520.1-P	Field mustard	nucleus	81.05	82.67
PGSC0003DMT400070382	Potato	nucleus	77.78	82.64
Solyc11g007930.1.1	Tomato	nucleus	74.51	82.61
AT3G53650.1	Thale cress	nucleus	74.51	82.61
VIT_06s0004g04250.t01	Wine grape	nucleus	79.74	82.43
Solyc05g055440.1.1	Tomato	nucleus	79.08	82.31
Bra002436.1-P	Field mustard	nucleus	75.82	82.27
VIT_13s0019g05370.t01	Wine grape	nucleus	77.78	82.07
AT3G45980.1	Thale cress	nucleus	80.39	82.0
AT5G59910.1	Thale cress	nucleus	80.39	82.0
PGSC0003DMT400022074	Potato	nucleus	77.12	81.94
KRH29833	Soybean	nucleus	76.47	81.82
KRH29836	Soybean	nucleus	79.08	81.76
KRH29832	Soybean	nucleus	79.08	81.76
KRH29831	Soybean	nucleus	79.08	81.76
AT3G09480.1	Thale cress	nucleus	67.32	81.75
PGSC0003DMT400001108	Potato	nucleus	75.82	81.69
PGSC0003DMT400018456	Potato	nucleus	75.82	81.69
PGSC0003DMT400074994	Potato	nucleus	78.43	81.63
Solyc06g005390.1.1	Tomato	nucleus	78.43	81.63
PGSC0003DMT400022099	Potato	nucleus	76.47	81.25
Solyc11g007920.1.1	Tomato	nucleus	76.47	81.25
Bra006639.1-P	Field mustard	nucleus	76.47	81.25
KRH24831	Soybean	nucleus	79.08	81.21
KRH24833	Soybean	nucleus	79.08	81.21
AT1G07790.1	Thale cress	nucleus	78.43	81.08
Bra020275.1-P	Field mustard	nucleus	75.16	80.99
AT2G28720.1	Thale cress	nucleus	79.74	80.79
AT5G22880.1	Thale cress	nucleus	76.47	80.69
Solyc12g013510.1.1	Tomato	nucleus	73.2	80.58
KRH24830	Soybean	nucleus	78.43	80.54
Bra035677.1-P	Field mustard	nucleus	78.43	80.54
Bra011930.1-P	Field mustard	nucleus	77.78	79.87
Solyc02g038690.1.1	Tomato	nucleus	69.93	79.85
Solyc06g074780.1.1	Tomato	nucleus	74.51	79.72
PGSC0003DMT400018455	Potato	nucleus	74.51	79.72
VIT_06s0004g04300.t01	Wine grape	nucleus	79.08	79.61
GSMUA_Achr7P15260_001	Banana	nucleus	77.12	77.63
Bra000483.1-P	Field mustard	nucleus	78.43	77.42
PGSC0003DMT400074020	Potato	nucleus	63.4	71.85
CDX71015	Canola	nucleus	28.76	66.67
Solyc10g044580.1.1	Tomato	nucleus	54.9	62.22
VIT_06s0004g04240.t01	Wine grape	nucleus	79.08	52.61
GSMUA_Achr6P33320_001	Banana	nucleus	67.97	50.24
EER98531	Sorghum	nucleus	45.1	23.08
PGSC0003DMT400074018	Potato	nucleus	55.56	22.31

Protein Annotations

Gene3D:1.10.20.10	MapMan:12.1.3	EntrezGene:8078228	UniProt:A0A1W0VY87	GO:GO:0000786	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0046982	InterPro:Histone-fold	InterPro:Histone_H2A/H2B/H3
InterPro:Histone_H2B	InterPro:IPR009072	EnsemblPlants:OQU87075	ProteinID:OQU87075	ProteinID:OQU87075.1	PFAM:PF00125
PRINTS:PR00621	ScanProsite:PS00357	PANTHER:PTHR23428	PANTHER:PTHR23428:SF72	SMART:SM00427	EnsemblPlantsGene:SORBI_3003G200501
SUPFAM:SSF47113	UniParc:UPI0001A84E33	RefSeq:XP_002458055.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:-:52835299..52836170

Molecular Weight (calculated)

16537.2 Da

IEP (calculated)

10.743

GRAVY (calculated)

-0.723

Length

153 amino acids

Sequence
(BLAST)

001: MAPKAEKKPA AKKPAEEEPA AEKAEKTPAG KKPKAEKRLP AGKSSAGKDG EGKKGKKKAK KSVETYKIYI FKVLKQVHPD IGISSKAMSI MNSFINDIFE
101: KLAAESAKLA RYNKKPTITS REIQTSVRLV LPGELAKHAV SEGTKAVTKF TSS

Best Arabidopsis Sequence Match ( AT3G45980.1 )
(BLAST)

001: MAPRAEKKPA EKKPAAEKPV EEKSKAEKAP AEKKPKAGKK LPKEAGAGGD KKKKMKKKSV ETYKIYIFKV LKQVHPDIGI SSKAMGIMNS FINDIFEKLA
101: SESSKLARYN KKPTITSREI QTAVRLVLPG ELAKHAVSEG TKAVTKFTSS

Arabidopsis Description

H2BHistone H2B [Source:UniProtKB/TrEMBL;Acc:A0A178V9F6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.