CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
vacuole 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d005322_P001	Maize	nucleus	68.56	78.24
TraesCS4A01G311600.1	Wheat	mitochondrion	22.41	75.28
Os09t0570850-00	Rice	nucleus	31.77	62.5
HORVU4Hr1G000750.1	Barley	nucleus	30.43	51.12
EES00304	Sorghum	nucleus	24.41	48.99
EES00305	Sorghum	nucleus	24.41	48.99
EES00399	Sorghum	nucleus	24.41	48.67
EES03855	Sorghum	nucleus	22.07	48.18
OQU92807	Sorghum	nucleus	23.75	47.97
EES15460	Sorghum	nucleus	24.08	47.37
EER96770	Sorghum	nucleus	24.08	47.06
EES15092	Sorghum	nucleus	23.75	47.02
EES18353	Sorghum	nucleus	22.74	46.26
EER97675	Sorghum	nucleus	23.08	45.7
EES07386	Sorghum	nucleus	23.41	45.16
OQU87075	Sorghum	nucleus	23.08	45.1
TraesCS4B01G002800.1	Wheat	nucleus	44.15	43.0
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	29.77	42.38
KRH30545	Soybean	mitochondrion, nucleus	27.76	41.71
KRH25129	Soybean	nucleus	30.77	40.89
VIT_06s0061g00870.t01	Wine grape	nucleus	28.76	39.81
AT1G08170.1	Thale cress	nucleus	26.09	32.1
PGSC0003DMT400018366	Potato	mitochondrion, nucleus	28.43	31.14
CDX93584	Canola	nucleus	25.75	29.96
Bra018647.1-P	Field mustard	nucleus	25.75	29.96
Solyc06g074750.1.1	Tomato	mitochondrion, nucleus	28.09	29.68
CDX95087	Canola	nucleus	26.42	24.76

Protein Annotations

Gene3D:1.10.20.10	MapMan:12.1.3	EntrezGene:8061715	UniProt:C5X6L4	ncoils:Coil	EnsemblPlants:EER98531
ProteinID:EER98531	ProteinID:EER98531.1	GO:GO:0000786	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005694	GO:GO:0046982	InterPro:Histone-fold	InterPro:Histone_H2A/H2B/H3	InterPro:Histone_H2B	InterPro:IPR009072
PFAM:PF00125	PRINTS:PR00621	PANTHER:PTHR23428	PANTHER:PTHR23428:SF50	SMART:SM00427	EnsemblPlantsGene:SORBI_3002G138000
SUPFAM:SSF47113	UniParc:UPI0001A841E9	RefSeq:XP_002462010.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:-:21218544..21219865

Molecular Weight (calculated)

32184.0 Da

IEP (calculated)

9.481

GRAVY (calculated)

-0.863

Length

299 amino acids

Sequence
(BLAST)

001: MAPKRRGNKV VGSVVKTKVV QETVEVIVAD DDDTAEAEQQ MVPEALAVAP SAVDVSGSTV VHVVEVTTPD GGDNATGSNV KQPAVAKRGR GRREEEKEKQ
101: PAPPEDSVLV PQSQETQDPN EEEEDQEDAS KKKKQKQKQR QQDEDDEAQP ETPRVASERK KATPKKAKAK AQPQQQAGGG GDAGKKRPKA RRRLGQASAG
201: GDAGMGGVGG YKRYVWRVLK QVHPDLGVSG HAMQVLDMMM ADMFERLADE AARLSKATGR MTLTSREVQS AVRLVLPGDL GKHAIAEGTK AISKYMSYA

Best Arabidopsis Sequence Match ( AT1G08170.1 )
(BLAST)

001: MAPRKPKVVS VTKKKKVVEE TIKVTVTEEG DPCVITETAN DQETQDLTFS IPVGENVTTV EIPVEVPDER SLPVGENVTT VKIPVDDRDE SSPQPPETPV
101: EVRDEPSPQP PETPASKSEG TLKKTDKVEK KQENKKKKKK KKRDDLAGDE YRRYVYKVMK QVHPDLGITS KAMTVVNMFM GDMFERIAQE AARLSDYTKR
201: RTLSSREIEA AVRLVLPGEL SRHAVAEGSK AVSNFVGYDS RKR

Arabidopsis Description

Histone H2B.2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.