Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G311600.1 | Wheat | mitochondrion | 48.88 | 97.75 |
| Os09t0570850-00 | Rice | nucleus | 51.12 | 59.87 |
| TraesCS4B01G002800.1 | Wheat | nucleus | 90.45 | 52.44 |
| HORVU3Hr1G034060.1 | Barley | nucleus | 34.27 | 44.2 |
| HORVU0Hr1G006420.1 | Barley | nucleus | 34.27 | 44.2 |
| HORVU6Hr1G015790.1 | Barley | nucleus | 33.15 | 43.7 |
| HORVU1Hr1G049920.1 | Barley | nucleus | 35.39 | 41.18 |
| HORVU6Hr1G006110.1 | Barley | nucleus, plastid | 26.97 | 41.03 |
| HORVU6Hr1G087190.1 | Barley | nucleus | 34.27 | 40.67 |
| HORVU7Hr1G110130.1 | Barley | nucleus | 26.4 | 39.83 |
| HORVU7Hr1G110330.2 | Barley | nucleus | 26.4 | 39.5 |
| HORVU7Hr1G110190.1 | Barley | nucleus | 28.65 | 38.64 |
| HORVU7Hr1G110290.1 | Barley | nucleus | 21.91 | 38.24 |
| HORVU6Hr1G008320.1 | Barley | nucleus | 33.71 | 38.22 |
| HORVU6Hr1G005950.2 | Barley | nucleus | 33.15 | 38.06 |
| HORVU7Hr1G110170.1 | Barley | nucleus | 34.27 | 37.42 |
| HORVU1Hr1G091370.1 | Barley | nucleus | 32.58 | 36.48 |
| HORVU6Hr1G015760.1 | Barley | nucleus, plastid | 33.15 | 36.2 |
| HORVU3Hr1G013530.1 | Barley | nucleus | 33.15 | 35.98 |
| HORVU6Hr1G083110.1 | Barley | nucleus | 34.27 | 35.67 |
| HORVU4Hr1G070240.1 | Barley | nucleus | 33.15 | 35.54 |
| HORVU1Hr1G058500.1 | Barley | nucleus | 36.52 | 35.52 |
| HORVU4Hr1G009040.2 | Barley | nucleus | 34.27 | 35.47 |
| HORVU2Hr1G077630.1 | Barley | nucleus | 35.96 | 35.36 |
| HORVU7Hr1G110090.1 | Barley | nucleus, plastid | 34.27 | 35.26 |
| HORVU1Hr1G072190.4 | Barley | nucleus | 34.83 | 35.23 |
| HORVU4Hr1G073130.1 | Barley | nucleus, plastid | 35.96 | 34.97 |
| HORVU3Hr1G013680.1 | Barley | nucleus | 33.15 | 34.71 |
| HORVU1Hr1G085540.1 | Barley | nucleus | 34.83 | 34.64 |
| HORVU1Hr1G078530.3 | Barley | nucleus | 34.83 | 34.44 |
| HORVU1Hr1G078480.6 | Barley | nucleus | 34.83 | 34.44 |
| Zm00001d005322_P001 | Maize | nucleus | 50.0 | 33.97 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plastid | 39.33 | 33.33 |
| KRH30545 | Soybean | mitochondrion, nucleus | 35.96 | 32.16 |
| HORVU1Hr1G056530.1 | Barley | nucleus, plastid | 36.52 | 30.81 |
| HORVU3Hr1G015810.1 | Barley | nucleus, plastid | 35.96 | 30.62 |
| EER98531 | Sorghum | nucleus | 51.12 | 30.43 |
| HORVU3Hr1G086580.1 | Barley | nucleus, plastid | 30.9 | 29.89 |
| KRH25129 | Soybean | nucleus | 37.64 | 29.78 |
| VIT_06s0061g00870.t01 | Wine grape | nucleus | 35.39 | 29.17 |
| HORVU5Hr1G094500.1 | Barley | nucleus, plastid | 34.27 | 28.77 |
| HORVU1Hr1G066130.1 | Barley | nucleus | 35.96 | 26.34 |
| PGSC0003DMT400018366 | Potato | mitochondrion, nucleus | 38.2 | 24.91 |
| HORVU3Hr1G086610.2 | Barley | nucleus | 29.21 | 24.76 |
| CDX93584 | Canola | nucleus | 35.39 | 24.51 |
| Bra018647.1-P | Field mustard | nucleus | 35.39 | 24.51 |
| AT1G08170.1 | Thale cress | nucleus | 32.02 | 23.46 |
| Solyc06g074750.1.1 | Tomato | mitochondrion, nucleus | 37.08 | 23.32 |
| CDX95087 | Canola | nucleus | 34.27 | 19.12 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.3 | UniProt:A0A287MW73 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005694 | GO:GO:0046982 | EnsemblPlantsGene:HORVU4Hr1G000750 | EnsemblPlants:HORVU4Hr1G000750.1 | InterPro:Histone-fold |
| InterPro:Histone_H2A/H2B/H3 | InterPro:Histone_H2B | InterPro:IPR009072 | PFAM:PF00125 | PRINTS:PR00621 | PANTHER:PTHR23428 |
| PANTHER:PTHR23428:SF50 | SMART:SM00427 | SUPFAM:SSF47113 | UniParc:UPI000B477916 | SEG:seg | : |
Description
No Description!
Coordinates
chrchr4H:-:1257195..1258183
Molecular Weight (calculated)
19443.2 Da
IEP (calculated)
10.459
GRAVY (calculated)
-0.888
Length
178 amino acids
Sequence
(BLAST)
(BLAST)
001: KTPASLQSQE TQEEPYAYQD ETTKKRPAQE DGEPMPEGPE TPTQKRAKTR KAEASARKKM SSSSAAAGKG TGKGQGGRRR RRLGGNKVDM GYKAYVYRVL
101: KQVHPDLGAS GKTMQALDMM MADMFERLAT EASRLAQYAG RATLTSRDVQ NAVRLVLPGE LAKHAISEGT KAVTMYMS
101: KQVHPDLGAS GKTMQALDMM MADMFERLAT EASRLAQYAG RATLTSRDVQ NAVRLVLPGE LAKHAISEGT KAVTMYMS
001: MAPRAEKKPA EKKPAAEKPV EEKSKAEKAP AEKKPKAGKK LPKEAGAGGD KKKKMKKKSV ETYKIYIFKV LKQVHPDIGI SSKAMGIMNS FINDIFEKLA
101: SESSKLARYN KKPTITSREI QTAVRLVLPG ELAKHAVSEG TKAVTKFTSS
101: SESSKLARYN KKPTITSREI QTAVRLVLPG ELAKHAVSEG TKAVTKFTSS
Arabidopsis Description
H2BHistone H2B [Source:UniProtKB/TrEMBL;Acc:A0A178V9F6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.