Factsheet for HORVU6Hr1G006110.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
TargetP:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G110330.2	Barley	nucleus	71.79	70.59
HORVU7Hr1G110130.1	Barley	nucleus	70.09	69.49
Os05t0460475-00	Rice	nucleus	61.54	67.92
GSMUA_Achr9P04060_001	Banana	nucleus	65.81	65.81
CDX71015	Canola	nucleus	35.04	62.12
HORVU6Hr1G015790.1	Barley	nucleus	68.38	59.26
KRH22818	Soybean	nucleus	65.81	57.89
HORVU7Hr1G110190.1	Barley	nucleus	64.96	57.58
HORVU0Hr1G006420.1	Barley	nucleus	67.52	57.25
HORVU3Hr1G034060.1	Barley	nucleus	67.52	57.25
Solyc11g007930.1.1	Tomato	nucleus	67.52	57.25
AT3G09480.1	Thale cress	nucleus	61.54	57.14
AT5G02570.1	Thale cress	nucleus	64.1	56.82
KRH26542	Soybean	nucleus	64.96	56.72
Bra006685.1-P	Field mustard	nucleus	67.52	56.03
Solyc02g038690.1.1	Tomato	nucleus	64.1	55.97
GSMUA_Achr2P19080_001	Banana	nucleus	68.38	55.94
Bra039810.1-P	Field mustard	nucleus	65.81	55.8
KRG95819	Soybean	nucleus	65.81	55.8
KRH67549	Soybean	nucleus	65.81	55.8
PGSC0003DMT400070383	Potato	nucleus	67.52	55.63
KRH34681	Soybean	nucleus	64.96	55.47
Solyc12g013510.1.1	Tomato	nucleus	65.81	55.4
KRG92106	Soybean	nucleus	64.1	55.15
Bra003150.1-P	Field mustard	nucleus	64.96	55.07
Bra007018.1-P	Field mustard	nucleus	64.96	55.07
Bra038267.1-P	Field mustard	nucleus	64.1	54.74
KRH19721	Soybean	nucleus	64.96	54.68
PGSC0003DMT400043578	Potato	nucleus	65.81	54.61
Solyc03g071620.1.1	Tomato	nucleus	65.81	54.61
EES00304	Sorghum	nucleus	69.23	54.36
Zm00001d039821_P001	Maize	plastid	69.23	54.36
AT2G37470.1	Thale cress	nucleus	64.1	54.35
AT3G53650.1	Thale cress	nucleus	64.1	54.35
Bra002436.1-P	Field mustard	nucleus	64.96	53.9
EES00305	Sorghum	nucleus	68.38	53.69
PGSC0003DMT400022074	Potato	nucleus	65.81	53.47
PGSC0003DMT400022099	Potato	nucleus	65.81	53.47
EES00399	Sorghum	nucleus	68.38	53.33
HORVU6Hr1G087190.1	Barley	nucleus	68.38	53.33
AT3G46030.1	Thale cress	nucleus	65.81	53.1
AT5G22880.1	Thale cress	nucleus	65.81	53.1
VIT_13s0019g05370.t01	Wine grape	nucleus	65.81	53.1
PGSC0003DMT400060096	Potato	nucleus	66.67	53.06
Solyc05g055440.1.1	Tomato	nucleus	66.67	53.06
HORVU1Hr1G049920.1	Barley	nucleus	69.23	52.94
Bra020275.1-P	Field mustard	nucleus	64.1	52.82
Bra006639.1-P	Field mustard	nucleus	64.96	52.78
PGSC0003DMT400070382	Potato	nucleus	64.96	52.78
Solyc11g007920.1.1	Tomato	nucleus	64.96	52.78
PGSC0003DMT400077939	Potato	nucleus	65.81	52.74
Solyc06g075800.1.1	Tomato	nucleus	65.81	52.74
VIT_06s0004g04230.t01	Wine grape	nucleus	65.81	52.74
AT1G07790.1	Thale cress	nucleus	66.67	52.7
AT3G45980.1	Thale cress	nucleus	67.52	52.67
Bra002520.1-P	Field mustard	nucleus	67.52	52.67
EES15460	Sorghum	nucleus	68.38	52.63
KRH29833	Soybean	nucleus	64.1	52.45
PGSC0003DMT400074994	Potato	nucleus	65.81	52.38
Solyc06g005390.1.1	Tomato	nucleus	65.81	52.38
HORVU6Hr1G005950.2	Barley	nucleus	69.23	52.26
Solyc11g066430.1.1	Tomato	nucleus	62.39	52.14
PGSC0003DMT400018456	Potato	nucleus	63.25	52.11
Solyc06g074790.1.1	Tomato	nucleus	63.25	52.11
VIT_06s0004g04250.t01	Wine grape	nucleus	65.81	52.03
Bra035677.1-P	Field mustard	nucleus	65.81	51.68
HORVU6Hr1G008320.1	Barley	nucleus	69.23	51.59
PGSC0003DMT400001108	Potato	nucleus	62.39	51.41
KRH29831	Soybean	nucleus	64.96	51.35
KRH29832	Soybean	nucleus	64.96	51.35
KRH29836	Soybean	nucleus	64.96	51.35
AT5G59910.1	Thale cress	nucleus	65.81	51.33
PGSC0003DMT400018455	Potato	nucleus	62.39	51.05
Bra011930.1-P	Field mustard	nucleus	64.96	51.01
KRH24830	Soybean	nucleus	64.96	51.01
KRH24831	Soybean	nucleus	64.96	51.01
KRH24833	Soybean	nucleus	64.96	51.01
AT2G28720.1	Thale cress	nucleus	65.81	50.99
HORVU7Hr1G110170.1	Barley	nucleus	70.94	50.92
GSMUA_Achr7P15260_001	Banana	nucleus	65.81	50.66
PGSC0003DMT400074020	Potato	nucleus	58.12	50.37
Solyc06g074780.1.1	Tomato	nucleus	61.54	50.35
HORVU1Hr1G091370.1	Barley	nucleus	68.38	50.31
VIT_06s0004g04300.t01	Wine grape	nucleus	64.96	50.0
Bra000483.1-P	Field mustard	nucleus	65.81	49.68
HORVU6Hr1G015760.1	Barley	nucleus, plastid	68.38	49.08
HORVU4Hr1G070240.1	Barley	nucleus	68.38	48.19
HORVU3Hr1G013530.1	Barley	nucleus	67.52	48.17
HORVU7Hr1G110090.1	Barley	nucleus, plastid	70.94	47.98
HORVU6Hr1G083110.1	Barley	nucleus	68.38	46.78
HORVU4Hr1G009040.2	Barley	nucleus	68.38	46.51
HORVU3Hr1G013680.1	Barley	nucleus	67.52	46.47
HORVU1Hr1G072190.4	Barley	nucleus	68.38	45.45
HORVU2Hr1G077630.1	Barley	nucleus	70.09	45.3
HORVU1Hr1G078480.6	Barley	nucleus	69.23	45.0
HORVU1Hr1G078530.3	Barley	nucleus	69.23	45.0
HORVU4Hr1G073130.1	Barley	nucleus, plastid	70.09	44.81
HORVU1Hr1G058500.1	Barley	nucleus	69.23	44.26
HORVU7Hr1G110290.1	Barley	nucleus	38.46	44.12
HORVU1Hr1G085540.1	Barley	nucleus	66.67	43.58
Solyc10g044580.1.1	Tomato	nucleus	47.01	40.74
HORVU3Hr1G015810.1	Barley	nucleus, plastid	71.79	40.19
HORVU1Hr1G056530.1	Barley	nucleus, plastid	70.09	38.86
HORVU5Hr1G094500.1	Barley	nucleus, plastid	70.09	38.68
HORVU3Hr1G086580.1	Barley	nucleus, plastid	58.97	37.5
GSMUA_Achr6P33320_001	Banana	nucleus	65.81	37.2
HORVU1Hr1G066130.1	Barley	nucleus	70.94	34.16
Zm00001d048491_P001	Maize	plastid	69.23	34.03
VIT_06s0004g04240.t01	Wine grape	nucleus	64.96	33.04
HORVU3Hr1G086610.2	Barley	nucleus	58.97	32.86
HORVU4Hr1G000750.1	Barley	nucleus	41.03	26.97
PGSC0003DMT400074018	Potato	nucleus	47.86	14.7

Protein Annotations

Gene3D:1.10.20.10	MapMan:12.1.3	UniProt:A0A287T807	GO:GO:0000786	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005694	GO:GO:0046982	EnsemblPlantsGene:HORVU6Hr1G006110	EnsemblPlants:HORVU6Hr1G006110.1	InterPro:Histone-fold
InterPro:Histone_H2A/H2B/H3	InterPro:Histone_H2B	InterPro:IPR009072	PFAM:PF00125	PRINTS:PR00621	ScanProsite:PS00357
PANTHER:PTHR23428	PANTHER:PTHR23428:SF72	SMART:SM00427	SUPFAM:SSF47113	UniParc:UPI000B488C98	SEG:seg

Description

Histone H2B [Source:UniProtKB/TrEMBL;Acc:A0A287T807]

Coordinates

chrchr6H:-:13444913..13445342

Molecular Weight (calculated)

13651.6 Da

IEP (calculated)

12.474

GRAVY (calculated)

-1.056

Length

117 amino acids

Sequence
(BLAST)

001: QQQHPWRPRL PRRSRWRRPR RARSPRRRRR CRRPRKAPEQ VHPDIGISSK AMSIMNSFIN DIFEKLAGES AKLARYNKKP TITSREIQTS VRLVLPGELA
101: KHAVSEGTKA VTKFTSS

Best Arabidopsis Sequence Match ( AT1G07790.1 )
(BLAST)

001: MAPRAEKKPA EKKTAAERPV EENKAAEKAP AEKKPKAGKK LPPKEAGDKK KKRSKKNVET YKIYIFKVLK QVHPDIGISS KAMGIMNSFI NDIFEKLAQE
101: SSKLARYNKK PTITSREIQT AVRLVLPGEL AKHAVSEGTK AVTKFTSS

Arabidopsis Description

HTB1Histone H2B.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQQ4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.