Factsheet for HORVU3Hr1G034060.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 27142171

msms PMID: 27142171 doi

Z Zeng, J Jiang

Department of Horticulture, University of Wisconsin-Madison , Madison, Wisconsin 53706, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU0Hr1G006420.1	Barley	nucleus	100.0	100.0
TraesCS6D01G046600.1	Wheat	nucleus	95.65	97.06
TraesCS6A01G040500.1	Wheat	nucleus	94.2	95.59
HORVU6Hr1G015790.1	Barley	nucleus	92.03	94.07
HORVU7Hr1G110290.1	Barley	nucleus	64.49	87.25
GSMUA_Achr9P04060_001	Banana	nucleus	72.46	85.47
HORVU6Hr1G087190.1	Barley	nucleus	92.03	84.67
HORVU7Hr1G110170.1	Barley	nucleus	99.28	84.05
EES00304	Sorghum	nucleus	89.86	83.22
HORVU1Hr1G049920.1	Barley	nucleus	92.03	83.01
KRH22818	Soybean	nucleus	79.71	82.71
HORVU6Hr1G005950.2	Barley	nucleus	92.75	82.58
EES00305	Sorghum	nucleus	89.13	82.55
Zm00001d039821_P001	Maize	plastid	89.13	82.55
Bra038267.1-P	Field mustard	nucleus	81.88	82.48
KRG92106	Soybean	nucleus	81.16	82.35
EES15460	Sorghum	nucleus	90.58	82.24
KRH26542	Soybean	nucleus	79.71	82.09
EES00399	Sorghum	nucleus	89.13	82.0
KRG95819	Soybean	nucleus	81.88	81.88
KRH67549	Soybean	nucleus	81.88	81.88
AT2G37470.1	Thale cress	nucleus	81.16	81.16
Bra003150.1-P	Field mustard	nucleus	81.16	81.16
Bra007018.1-P	Field mustard	nucleus	81.16	81.16
Bra039810.1-P	Field mustard	nucleus	81.16	81.16
KRH19721	Soybean	nucleus	81.16	80.58
AT5G02570.1	Thale cress	nucleus	76.81	80.3
KRH34681	Soybean	nucleus	79.71	80.29
AT3G53650.1	Thale cress	nucleus	79.71	79.71
AT3G09480.1	Thale cress	nucleus	72.46	79.37
HORVU7Hr1G110090.1	Barley	nucleus, plastid	99.28	79.19
PGSC0003DMT400070383	Potato	nucleus	81.16	78.87
PGSC0003DMT400043578	Potato	nucleus	80.43	78.72
Solyc03g071620.1.1	Tomato	nucleus	80.43	78.72
AT3G46030.1	Thale cress	nucleus	82.61	78.62
KRH29833	Soybean	nucleus	81.16	78.32
Bra006685.1-P	Field mustard	nucleus	79.71	78.01
HORVU6Hr1G015760.1	Barley	nucleus, plastid	92.03	77.91
HORVU6Hr1G008320.1	Barley	nucleus	88.41	77.71
Solyc02g038690.1.1	Tomato	nucleus	75.36	77.61
Solyc11g007930.1.1	Tomato	nucleus	77.54	77.54
Bra020275.1-P	Field mustard	nucleus	79.71	77.46
Solyc06g074790.1.1	Tomato	nucleus	79.71	77.46
HORVU3Hr1G013530.1	Barley	nucleus	92.03	77.44
PGSC0003DMT400077939	Potato	nucleus	81.88	77.4
Solyc06g075800.1.1	Tomato	nucleus	81.88	77.4
AT5G22880.1	Thale cress	nucleus	81.16	77.24
Solyc11g066430.1.1	Tomato	nucleus	78.26	77.14
GSMUA_Achr2P19080_001	Banana	nucleus	79.71	76.92
PGSC0003DMT400018456	Potato	nucleus	78.99	76.76
Bra002520.1-P	Field mustard	nucleus	83.33	76.67
Bra002436.1-P	Field mustard	nucleus	78.26	76.6
HORVU4Hr1G070240.1	Barley	nucleus	92.03	76.51
PGSC0003DMT400022074	Potato	nucleus	79.71	76.39
PGSC0003DMT400022099	Potato	nucleus	79.71	76.39
VIT_06s0004g04250.t01	Wine grape	nucleus	81.88	76.35
PGSC0003DMT400074994	Potato	nucleus	81.16	76.19
Solyc06g005390.1.1	Tomato	nucleus	81.16	76.19
PGSC0003DMT400001108	Potato	nucleus	78.26	76.06
VIT_06s0004g04230.t01	Wine grape	nucleus	80.43	76.03
Bra006639.1-P	Field mustard	nucleus	78.99	75.69
PGSC0003DMT400070382	Potato	nucleus	78.99	75.69
Solyc11g007920.1.1	Tomato	nucleus	78.99	75.69
AT1G07790.1	Thale cress	nucleus	81.16	75.68
KRH29831	Soybean	nucleus	81.16	75.68
KRH29832	Soybean	nucleus	81.16	75.68
KRH29836	Soybean	nucleus	81.16	75.68
Solyc12g013510.1.1	Tomato	nucleus	76.09	75.54
PGSC0003DMT400060096	Potato	nucleus	80.43	75.51
Solyc05g055440.1.1	Tomato	nucleus	80.43	75.51
AT3G45980.1	Thale cress	nucleus	81.88	75.33
AT5G59910.1	Thale cress	nucleus	81.88	75.33
HORVU3Hr1G013680.1	Barley	nucleus	92.75	75.29
KRH24830	Soybean	nucleus	81.16	75.17
KRH24831	Soybean	nucleus	81.16	75.17
KRH24833	Soybean	nucleus	81.16	75.17
HORVU1Hr1G091370.1	Barley	nucleus	86.23	74.84
Bra035677.1-P	Field mustard	nucleus	80.43	74.5
VIT_13s0019g05370.t01	Wine grape	nucleus	78.26	74.48
HORVU7Hr1G110190.1	Barley	nucleus	71.01	74.24
AT2G28720.1	Thale cress	nucleus	81.16	74.17
HORVU4Hr1G009040.2	Barley	nucleus	92.03	73.84
HORVU7Hr1G110130.1	Barley	nucleus	63.04	73.73
PGSC0003DMT400018455	Potato	nucleus	76.09	73.43
Bra011930.1-P	Field mustard	nucleus	78.99	73.15
GSMUA_Achr7P15260_001	Banana	nucleus	80.43	73.03
VIT_06s0004g04300.t01	Wine grape	nucleus	80.43	73.03
Solyc06g074780.1.1	Tomato	nucleus	75.36	72.73
HORVU7Hr1G110330.2	Barley	nucleus	62.32	72.27
Bra000483.1-P	Field mustard	nucleus	79.71	70.97
HORVU2Hr1G077630.1	Barley	nucleus	92.75	70.72
HORVU1Hr1G078480.6	Barley	nucleus	90.58	69.44
HORVU1Hr1G078530.3	Barley	nucleus	90.58	69.44
HORVU4Hr1G073130.1	Barley	nucleus, plastid	91.3	68.85
HORVU1Hr1G072190.4	Barley	nucleus	87.68	68.75
HORVU1Hr1G058500.1	Barley	nucleus	90.58	68.31
PGSC0003DMT400074020	Potato	nucleus	66.67	68.15
HORVU6Hr1G006110.1	Barley	nucleus, plastid	57.25	67.52
HORVU1Hr1G085540.1	Barley	nucleus	84.78	65.36
HORVU6Hr1G083110.1	Barley	nucleus	80.43	64.91
CDX71015	Canola	nucleus	30.43	63.64
HORVU3Hr1G015810.1	Barley	nucleus, plastid	92.75	61.24
Solyc10g044580.1.1	Tomato	nucleus	58.7	60.0
HORVU1Hr1G056530.1	Barley	nucleus, plastid	89.86	58.77
HORVU5Hr1G094500.1	Barley	nucleus, plastid	89.13	58.02
HORVU3Hr1G086580.1	Barley	nucleus, plastid	73.91	55.43
Zm00001d048491_P001	Maize	plastid	90.58	52.52
HORVU1Hr1G066130.1	Barley	nucleus	89.86	51.03
HORVU3Hr1G086610.2	Barley	nucleus	77.54	50.95
VIT_06s0004g04240.t01	Wine grape	nucleus	80.43	48.26
GSMUA_Achr6P33320_001	Banana	nucleus	71.01	47.34
HORVU4Hr1G000750.1	Barley	nucleus	44.2	34.27
PGSC0003DMT400074018	Potato	nucleus	58.7	21.26

Protein Annotations

Gene3D:1.10.20.10	MapMan:12.1.3	EMBL:AK366082	UniProt:F2DQB4	GO:GO:0000786	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0046982	EnsemblPlantsGene:HORVU3Hr1G034060	EnsemblPlants:HORVU3Hr1G034060.1
InterPro:Histone-fold	InterPro:Histone_H2A/H2B/H3	InterPro:Histone_H2B	InterPro:IPR009072	PFAM:PF00125	PRINTS:PR00621
ScanProsite:PS00357	PANTHER:PTHR23428	PANTHER:PTHR23428:SF84	SMART:SM00427	SUPFAM:SSF47113	UniParc:UPI0002006B00
SEG:seg	:	:	:	:	:

Description

Histone H2B [Source:UniProtKB/TrEMBL;Acc:F2DQB4]

Coordinates

chrchr3H:-:183438620..183439300

Molecular Weight (calculated)

15105.5 Da

IEP (calculated)

10.825

GRAVY (calculated)

-0.683

Length

138 amino acids

Sequence
(BLAST)

001: MAPKAEKKPV AEKAEKTTAG KKTKAEKRPP ASKEGGEKKG KKKSKKSVET YKIYIFKVLK QVHPDIGISS KAMSIMNSFI NDIFEKLAGE SAKLARYNKK
101: PTITSREIQT SVRLVLPGEL AKHAVSEGTK AVTKFTSA

Best Arabidopsis Sequence Match ( AT1G07790.1 )
(BLAST)

001: MAPRAEKKPA EKKTAAERPV EENKAAEKAP AEKKPKAGKK LPPKEAGDKK KKRSKKNVET YKIYIFKVLK QVHPDIGISS KAMGIMNSFI NDIFEKLAQE
101: SSKLARYNKK PTITSREIQT AVRLVLPGEL AKHAVSEGTK AVTKFTSS

Arabidopsis Description

HTB1Histone H2B.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQQ4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.