Factsheet for Os05t0460475-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
endoplasmic reticulum 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 18203134

msms PMID: 18203134 doi

G Li, BR Nallamilli, F Tan, Z Peng

Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G046500.1	Wheat	nucleus	57.55	92.42
GSMUA_Achr9P04060_001	Banana	nucleus	84.91	76.92
Os01t0839500-00	Rice	nucleus	94.34	71.94
KRH22818	Soybean	nucleus	88.68	70.68
KRH26542	Soybean	nucleus	88.68	70.15
AT5G02570.1	Thale cress	nucleus	86.79	69.7
AT3G09480.1	Thale cress	nucleus	81.13	68.25
Solyc02g038690.1.1	Tomato	nucleus	85.85	67.91
GSMUA_Achr2P19080_001	Banana	nucleus	91.51	67.83
KRG92106	Soybean	nucleus	86.79	67.65
Solyc11g007930.1.1	Tomato	nucleus	87.74	67.39
KRH34681	Soybean	nucleus	86.79	67.15
Bra038267.1-P	Field mustard	nucleus	86.79	67.15
Zm00001d039821_P001	Maize	plastid	94.34	67.11
EES00304	Sorghum	nucleus	94.34	67.11
EES00399	Sorghum	nucleus	94.34	66.67
Bra007018.1-P	Field mustard	nucleus	86.79	66.67
Bra039810.1-P	Field mustard	nucleus	86.79	66.67
Os03t0279000-00	Rice	nucleus	95.28	66.45
EES00305	Sorghum	nucleus	93.4	66.44
Solyc12g013510.1.1	Tomato	nucleus	86.79	66.19
KRH19721	Soybean	nucleus	86.79	66.19
PGSC0003DMT400070382	Potato	nucleus	89.62	65.97
PGSC0003DMT400043578	Potato	nucleus	87.74	65.96
KRG95819	Soybean	nucleus	85.85	65.94
KRH67549	Soybean	nucleus	85.85	65.94
Solyc03g071620.1.1	Tomato	nucleus	86.79	65.25
EES15460	Sorghum	nucleus	93.4	65.13
VIT_06s0004g04230.t01	Wine grape	nucleus	89.62	65.07
KRH29833	Soybean	nucleus	87.74	65.03
Solyc11g066430.1.1	Tomato	nucleus	85.85	65.0
PGSC0003DMT400070383	Potato	nucleus	86.79	64.79
PGSC0003DMT400022099	Potato	nucleus	87.74	64.58
Solyc11g007920.1.1	Tomato	nucleus	87.74	64.58
Bra006685.1-P	Field mustard	nucleus	85.85	64.54
Bra002436.1-P	Field mustard	nucleus	85.85	64.54
AT3G53650.1	Thale cress	nucleus	83.96	64.49
AT2G37470.1	Thale cress	nucleus	83.96	64.49
PGSC0003DMT400077939	Potato	nucleus	88.68	64.38
VIT_06s0004g04250.t01	Wine grape	nucleus	89.62	64.19
PGSC0003DMT400001108	Potato	nucleus	85.85	64.08
PGSC0003DMT400022074	Potato	nucleus	86.79	63.89
Bra003150.1-P	Field mustard	nucleus	83.02	63.77
Solyc06g075800.1.1	Tomato	nucleus	87.74	63.7
Solyc06g074780.1.1	Tomato	nucleus	85.85	63.64
AT3G46030.1	Thale cress	nucleus	86.79	63.45
Solyc06g074790.1.1	Tomato	nucleus	84.91	63.38
Bra020275.1-P	Field mustard	nucleus	84.91	63.38
PGSC0003DMT400074994	Potato	nucleus	87.74	63.27
Solyc06g005390.1.1	Tomato	nucleus	87.74	63.27
PGSC0003DMT400060096	Potato	nucleus	87.74	63.27
PGSC0003DMT400018455	Potato	nucleus	84.91	62.94
KRH29831	Soybean	nucleus	87.74	62.84
KRH29836	Soybean	nucleus	87.74	62.84
KRH29832	Soybean	nucleus	87.74	62.84
VIT_13s0019g05370.t01	Wine grape	nucleus	85.85	62.76
AT5G22880.1	Thale cress	nucleus	85.85	62.76
PGSC0003DMT400018456	Potato	nucleus	83.96	62.68
AT5G59910.1	Thale cress	nucleus	88.68	62.67
Solyc05g055440.1.1	Tomato	nucleus	86.79	62.59
Bra006639.1-P	Field mustard	nucleus	84.91	62.5
Os05t0574300-00	Rice	nucleus	89.62	62.5
KRH24833	Soybean	nucleus	87.74	62.42
KRH24831	Soybean	nucleus	87.74	62.42
KRH24830	Soybean	nucleus	87.74	62.42
Os01t0153100-00	Rice	nucleus	89.62	62.09
Os01t0149600-01	Rice	nucleus	89.62	62.09
Os01t0153300-00	Rice	nucleus	90.57	61.94
Bra035677.1-P	Field mustard	nucleus	86.79	61.74
HORVU6Hr1G006110.1	Barley	nucleus, plastid	67.92	61.54
AT1G07790.1	Thale cress	nucleus	85.85	61.49
Os01t0152300-00	Rice	nucleus	88.68	61.44
Os01t0152900-00	Rice	nucleus	88.68	61.44
Bra002520.1-P	Field mustard	nucleus	86.79	61.33
AT3G45980.1	Thale cress	nucleus	86.79	61.33
VIT_06s0004g04300.t01	Wine grape	nucleus	87.74	61.18
GSMUA_Achr7P15260_001	Banana	nucleus	87.74	61.18
Bra011930.1-P	Field mustard	nucleus	85.85	61.07
HORVU7Hr1G110130.1	Barley	nucleus	67.92	61.02
CDX71015	Canola	nucleus	37.74	60.61
HORVU7Hr1G110330.2	Barley	nucleus	67.92	60.5
AT2G28720.1	Thale cress	nucleus	85.85	60.26
PGSC0003DMT400074020	Potato	nucleus	75.47	59.26
Bra000483.1-P	Field mustard	nucleus	85.85	58.71
Solyc10g044580.1.1	Tomato	nucleus	69.81	54.81
HORVU6Hr1G083110.1	Barley	nucleus	83.96	52.05
Os08t0490900-00	Rice	nucleus	91.51	45.75
GSMUA_Achr6P33320_001	Banana	nucleus	82.08	42.03
Zm00001d048491_P001	Maize	plastid	93.4	41.6
VIT_06s0004g04240.t01	Wine grape	nucleus	89.62	41.3
Os09t0570850-00	Rice	nucleus	43.4	30.26
PGSC0003DMT400074018	Potato	nucleus	64.15	17.85

Protein Annotations

Gene3D:1.10.20.10	MapMan:12.1.3	UniProt:A0A0P0WN72	ProteinID:BAS94402.1	ncoils:Coil	GO:GO:0000786
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0046982	InterPro:Histone-fold
InterPro:Histone_H2A/H2B/H3	InterPro:Histone_H2B	InterPro:IPR009072	EnsemblPlantsGene:Os05g0460475	EnsemblPlants:Os05t0460475-00	PFAM:PF00125
PRINTS:PR00621	ScanProsite:PS00357	PANTHER:PTHR23428	PANTHER:PTHR23428:SF108	SMART:SM00427	SUPFAM:SSF47113
UniParc:UPI000393982F	SEG:seg	:	:	:	:

Description

Similar to Histone H2B.11. (Os05t0460475-00)

Coordinates

chr5:+:22625295..22625615

Molecular Weight (calculated)

11729.3 Da

IEP (calculated)

10.702

GRAVY (calculated)

-0.472

Length

106 amino acids

Sequence
(BLAST)

001: GGTGDKKGKK KAKKSVETYK IYIFKVLKQV HPDIGISSKA MSIMNSFVND IFEKLEQEAA RLARYNKKPT ITSREIQTSV RLVLPGELAK HAVSEGTKAV
101: TKFTSS

Best Arabidopsis Sequence Match ( AT2G28720.1 )
(BLAST)

001: MAPKAGKKPA EKKPAEKAPA EEEKVAEKAP AEKKPKAGKK LPKEAVTGGV EKKKKRVKKS TETYKIYIFK VLKQVHPDIG ISSKAMGIMN SFINDIFEKL
101: AQEASKLARY NKKPTITSRE IQTAVRLVLP GELAKHAVSE GTKAVTKFTS S

Arabidopsis Description

Histone H2B.3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SI96]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.