Factsheet for Os01t0839500-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 18022940
nucleus: 18203134
nucleus: 23777608
extracellular: 28232208

msms PMID: 18022940 doi

F Tan, G Li, BR Chitteti, Z Peng

Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.

msms PMID: 18203134 doi

G Li, BR Nallamilli, F Tan, Z Peng

Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 28232208 doi

Y Wang, R Gupta, W Song, HH Huh, SE Lee, J Wu, GK Agrawal, R Rakwal, KY Kang, SR Park, ST Kim

Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0460475-00	Rice	nucleus	71.94	94.34
GSMUA_Achr9P04060_001	Banana	nucleus	76.98	91.45
KRH26542	Soybean	nucleus	86.33	89.55
KRH22818	Soybean	nucleus	85.61	89.47
KRH19721	Soybean	nucleus	87.05	87.05
KRH67549	Soybean	nucleus	86.33	86.96
KRG95819	Soybean	nucleus	86.33	86.96
KRG92106	Soybean	nucleus	84.17	86.03
AT5G02570.1	Thale cress	nucleus	81.3	85.61
Bra039810.1-P	Field mustard	nucleus	84.17	84.78
Bra007018.1-P	Field mustard	nucleus	84.17	84.78
KRH34681	Soybean	nucleus	83.45	84.67
PGSC0003DMT400043578	Potato	nucleus	85.61	84.4
Solyc11g066430.1.1	Tomato	nucleus	84.89	84.29
PGSC0003DMT400077939	Potato	nucleus	88.49	84.25
Bra038267.1-P	Field mustard	nucleus	82.73	83.94
KRH29833	Soybean	nucleus	86.33	83.92
KRH24830	Soybean	nucleus	89.93	83.89
KRH29831	Soybean	nucleus	89.21	83.78
KRH29836	Soybean	nucleus	89.21	83.78
KRH29832	Soybean	nucleus	89.21	83.78
Solyc03g071620.1.1	Tomato	nucleus	84.89	83.69
Solyc06g075800.1.1	Tomato	nucleus	87.77	83.56
Os03t0279000-00	Rice	nucleus	91.37	83.55
PGSC0003DMT400070382	Potato	nucleus	86.33	83.33
AT3G53650.1	Thale cress	nucleus	82.73	83.33
AT2G37470.1	Thale cress	nucleus	82.73	83.33
Bra003150.1-P	Field mustard	nucleus	82.73	83.33
KRH24831	Soybean	nucleus	89.21	83.22
KRH24833	Soybean	nucleus	89.21	83.22
GSMUA_Achr2P19080_001	Banana	nucleus	85.61	83.22
Solyc06g074790.1.1	Tomato	nucleus	84.89	83.1
PGSC0003DMT400001108	Potato	nucleus	84.89	83.1
VIT_06s0004g04230.t01	Wine grape	nucleus	87.05	82.88
AT3G09480.1	Thale cress	nucleus	74.82	82.54
VIT_06s0004g04250.t01	Wine grape	nucleus	87.77	82.43
Solyc11g007920.1.1	Tomato	nucleus	84.89	81.94
Solyc06g074780.1.1	Tomato	nucleus	84.17	81.82
PGSC0003DMT400018456	Potato	nucleus	83.45	81.69
Bra002436.1-P	Field mustard	nucleus	82.73	81.56
VIT_13s0019g05370.t01	Wine grape	nucleus	84.89	81.38
AT3G46030.1	Thale cress	nucleus	84.89	81.38
AT5G59910.1	Thale cress	nucleus	87.77	81.33
PGSC0003DMT400018455	Potato	nucleus	83.45	81.12
PGSC0003DMT400070383	Potato	nucleus	82.73	80.99
PGSC0003DMT400060096	Potato	nucleus	85.61	80.95
Os05t0574300-00	Rice	nucleus	88.49	80.92
PGSC0003DMT400022099	Potato	nucleus	83.45	80.56
Os01t0152300-00	Rice	nucleus	88.49	80.39
Os01t0149600-01	Rice	nucleus	88.49	80.39
Os01t0153100-00	Rice	nucleus	88.49	80.39
Solyc06g005390.1.1	Tomato	nucleus	84.89	80.27
Solyc05g055440.1.1	Tomato	nucleus	84.89	80.27
PGSC0003DMT400074994	Potato	nucleus	84.89	80.27
VIT_06s0004g04300.t01	Wine grape	nucleus	87.77	80.26
Bra006685.1-P	Field mustard	nucleus	81.3	80.14
Bra002520.1-P	Field mustard	nucleus	86.33	80.0
Os01t0153300-00	Rice	nucleus	89.21	80.0
PGSC0003DMT400022074	Potato	nucleus	82.73	79.86
Solyc02g038690.1.1	Tomato	nucleus	76.98	79.85
Os01t0152900-00	Rice	nucleus	87.77	79.74
Solyc11g007930.1.1	Tomato	nucleus	79.14	79.71
Bra020275.1-P	Field mustard	nucleus	81.3	79.58
AT2G28720.1	Thale cress	nucleus	86.33	79.47
AT3G45980.1	Thale cress	nucleus	85.61	79.33
AT5G22880.1	Thale cress	nucleus	82.73	79.31
Bra035677.1-P	Field mustard	nucleus	84.89	79.19
Bra006639.1-P	Field mustard	nucleus	82.01	79.17
Solyc12g013510.1.1	Tomato	nucleus	79.14	79.14
AT1G07790.1	Thale cress	nucleus	84.17	79.05
Bra011930.1-P	Field mustard	nucleus	84.17	78.52
GSMUA_Achr7P15260_001	Banana	nucleus	84.89	77.63
Bra000483.1-P	Field mustard	nucleus	84.17	75.48
PGSC0003DMT400074020	Potato	nucleus	66.91	68.89
CDX71015	Canola	nucleus	31.65	66.67
Solyc10g044580.1.1	Tomato	nucleus	59.71	61.48
Os08t0490900-00	Rice	nucleus	90.65	59.43
VIT_06s0004g04240.t01	Wine grape	nucleus	87.77	53.04
GSMUA_Achr6P33320_001	Banana	nucleus	75.54	50.72
Os09t0570850-00	Rice	nucleus	38.13	34.87
PGSC0003DMT400074018	Potato	nucleus	58.27	21.26

Protein Annotations

Gene3D:1.10.20.10	MapMan:12.1.3	EntrezGene:4327384	ProteinID:BAB67889.1	ProteinID:BAB93209.1	ProteinID:BAF06668.1
ProteinID:BAS75144.1	ProteinID:EAZ14097.1	GO:GO:0000786	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005694	GO:GO:0046982	InterPro:Histone-fold	InterPro:Histone_H2A/H2B/H3	InterPro:Histone_H2B	InterPro:IPR009072
EnsemblPlantsGene:Os01g0839500	EnsemblPlants:Os01t0839500-00	PFAM:PF00125	PRINTS:PR00621	ScanProsite:PS00357	PANTHER:PTHR23428
PANTHER:PTHR23428:SF108	UniProt:Q943L2	SMART:SM00427	SUPFAM:SSF47113	UniParc:UPI00000ABDBB	RefSeq:XP_015612788.1
SEG:seg	:	:	:	:	:

Description

H2B.11Histone-fold domain containing protein. (Os01t0839500-00)

Coordinates

chr1:-:36014027..36014684

Molecular Weight (calculated)

15366.9 Da

IEP (calculated)

10.766

GRAVY (calculated)

-0.740

Length

139 amino acids

Sequence
(BLAST)

001: MAPKAEKKPA EKKPVEEKAE KKPKAEKRVP GAKEGGGEKK GKKKAKKSVE TYKIYIFKVL KQVHPDIGIS SKAMSIMNSF INDIFEKLAQ EAARLARYNK
101: KPTITSREIQ TSVRLVLPGE LAKHAVSEGT KAVTKFTSS

Best Arabidopsis Sequence Match ( AT2G28720.1 )
(BLAST)

001: MAPKAGKKPA EKKPAEKAPA EEEKVAEKAP AEKKPKAGKK LPKEAVTGGV EKKKKRVKKS TETYKIYIFK VLKQVHPDIG ISSKAMGIMN SFINDIFEKL
101: AQEASKLARY NKKPTITSRE IQTAVRLVLP GELAKHAVSE GTKAVTKFTS S

Arabidopsis Description

Histone H2B.3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SI96]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.