Skip to main content
crop-pal logo
Rice
Search for another protein from :
Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • endoplasmic reticulum 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:endoplasmic reticulum, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:endoplasmic reticulum
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
 nucleus: 18022940
nucleus: 18203134
nucleus: 23777608
plasma membrane: 27800704
msms PMID: 18022940 doi
F Tan, G Li, BR Chitteti, Z Peng
Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.
msms PMID: 18203134 doi
G Li, BR Nallamilli, F Tan, Z Peng
Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.
msms PMID: 23777608 doi
H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os01t0149600-01 Rice nucleus 98.69 98.69
Os01t0153100-00 Rice nucleus 97.39 97.39
Os01t0152300-00 Rice nucleus 97.39 97.39
Os01t0153300-00 Rice nucleus 98.04 96.77
Os05t0574300-00 Rice nucleus 96.08 96.71
Zm00001d050100_P001 Maize plastid 91.5 93.33
EES15092 Sorghum nucleus 91.5 92.72
Zm00001d025913_P001 Maize plastid 90.85 92.67
Zm00001d032070_P001 Maize plastid 90.2 92.0
GSMUA_Achr9P04060_001 Banana nucleus 69.28 90.6
Os05t0460475-00 Rice nucleus 61.44 88.68
Os01t0839500-00 Rice nucleus 79.74 87.77
Bra007018.1-P Field mustard nucleus 77.78 86.23
Os03t0279000-00 Rice nucleus 85.62 86.18
Bra039810.1-P Field mustard nucleus 77.12 85.51
KRH26542 Soybean nucleus 74.51 85.07
KRH22818 Soybean nucleus 73.86 84.96
KRH67549 Soybean nucleus 76.47 84.78
KRG95819 Soybean nucleus 76.47 84.78
AT2G37470.1 Thale cress nucleus 76.47 84.78
KRG92106 Soybean nucleus 75.16 84.56
PGSC0003DMT400043578 Potato nucleus 77.78 84.4
Solyc03g071620.1.1 Tomato nucleus 77.78 84.4
KRH19721 Soybean nucleus 76.47 84.17
Bra003150.1-P Field mustard nucleus 75.82 84.06
PGSC0003DMT400070383 Potato nucleus 77.78 83.8
Bra006685.1-P Field mustard nucleus 77.12 83.69
PGSC0003DMT400077939 Potato nucleus 79.74 83.56
Solyc06g075800.1.1 Tomato nucleus 79.74 83.56
AT3G46030.1 Thale cress nucleus 79.08 83.45
Bra002520.1-P Field mustard nucleus 81.7 83.33
Bra038267.1-P Field mustard nucleus 74.51 83.21
KRH34681 Soybean nucleus 74.51 83.21
AT3G53650.1 Thale cress nucleus 74.51 82.61
Solyc11g007930.1.1 Tomato nucleus 74.51 82.61
AT5G02570.1 Thale cress nucleus 71.24 82.58
VIT_06s0004g04250.t01 Wine grape nucleus 79.74 82.43
Solyc06g074790.1.1 Tomato nucleus 76.47 82.39
Bra002436.1-P Field mustard nucleus 75.82 82.27
VIT_06s0004g04230.t01 Wine grape nucleus 78.43 82.19
Solyc11g066430.1.1 Tomato nucleus 75.16 82.14
AT5G59910.1 Thale cress nucleus 80.39 82.0
AT3G45980.1 Thale cress nucleus 80.39 82.0
KRH29833 Soybean nucleus 76.47 81.82
GSMUA_Achr2P19080_001 Banana nucleus 76.47 81.82
KRH29832 Soybean nucleus 79.08 81.76
KRH29836 Soybean nucleus 79.08 81.76
KRH29831 Soybean nucleus 79.08 81.76
Bra020275.1-P Field mustard nucleus 75.82 81.69
Solyc06g005390.1.1 Tomato nucleus 78.43 81.63
PGSC0003DMT400074994 Potato nucleus 78.43 81.63
VIT_13s0019g05370.t01 Wine grape nucleus 77.12 81.38
PGSC0003DMT400070382 Potato nucleus 76.47 81.25
PGSC0003DMT400022099 Potato nucleus 76.47 81.25
PGSC0003DMT400022074 Potato nucleus 76.47 81.25
KRH24833 Soybean nucleus 79.08 81.21
KRH24831 Soybean nucleus 79.08 81.21
PGSC0003DMT400018456 Potato nucleus 75.16 80.99
PGSC0003DMT400060096 Potato nucleus 77.78 80.95
AT3G09480.1 Thale cress nucleus 66.67 80.95
AT2G28720.1 Thale cress nucleus 79.74 80.79
AT5G22880.1 Thale cress nucleus 76.47 80.69
Solyc12g013510.1.1 Tomato nucleus 73.2 80.58
Solyc11g007920.1.1 Tomato nucleus 75.82 80.56
Bra006639.1-P Field mustard nucleus 75.82 80.56
KRH24830 Soybean nucleus 78.43 80.54
AT1G07790.1 Thale cress nucleus 77.78 80.41
PGSC0003DMT400001108 Potato nucleus 74.51 80.28
Solyc05g055440.1.1 Tomato nucleus 77.12 80.27
Bra011930.1-P Field mustard nucleus 77.78 79.87
Bra035677.1-P Field mustard nucleus 77.78 79.87
Solyc02g038690.1.1 Tomato nucleus 69.93 79.85
PGSC0003DMT400018455 Potato nucleus 73.86 79.02
Solyc06g074780.1.1 Tomato nucleus 73.2 78.32
VIT_06s0004g04300.t01 Wine grape nucleus 77.78 78.29
Bra000483.1-P Field mustard nucleus 78.43 77.42
GSMUA_Achr7P15260_001 Banana nucleus 76.47 76.97
PGSC0003DMT400074020 Potato nucleus 63.4 71.85
CDX71015 Canola nucleus 28.1 65.15
Os08t0490900-00 Rice nucleus 89.54 64.62
Solyc10g044580.1.1 Tomato nucleus 54.25 61.48
VIT_06s0004g04240.t01 Wine grape nucleus 79.08 52.61
GSMUA_Achr6P33320_001 Banana nucleus 67.32 49.76
Os09t0570850-00 Rice nucleus 35.95 36.18
PGSC0003DMT400074018 Potato nucleus 56.21 22.57
Protein Annotations
Gene3D:1.10.20.10MapMan:12.1.3EntrezGene:4324500EMBL:AB075378ProteinID:BAB03630.1ProteinID:BAB44051.1
ProteinID:BAF03963.1ProteinID:BAS70445.1GO:GO:0000786GO:GO:0003674GO:GO:0003676GO:GO:0003677
GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0005694GO:GO:0046982InterPro:Histone-foldInterPro:Histone_H2A/H2B/H3InterPro:Histone_H2BInterPro:IPR009072
EnsemblPlantsGene:Os01g0152900EnsemblPlants:Os01t0152900-00PFAM:PF00125PRINTS:PR00621ScanProsite:PS00357PANTHER:PTHR23428
PANTHER:PTHR23428:SF175UniProt:Q7GBK0SMART:SM00427SUPFAM:SSF47113UniParc:UPI00000A5BBDRefSeq:XP_015621244.1
SEG:seg:::::
Description
F-box protein 2, histone H2B.7Similar to Histone H2B.1. (Os01t0152900-00)
Coordinates
chr1:-:2844503..2845212
Molecular Weight (calculated)
16475.1 Da
IEP (calculated)
10.768
GRAVY (calculated)
-0.720
Length
153 amino acids
Sequence
(BLAST)
001: MAPKAEKKPA AKKPAEEEPA AEKAEKAPAG KKPKAEKRLP AGKGEKGSGE GKKAGRKKGK KSVETYKIYI FKVLKQVHPD IGISSKAMSI MNSFINDIFE
101: KLAGESAKLA RYNKKPTITS REIQTSVRLV LPGELAKHAV SEGTKAVTKF TSA
Best Arabidopsis Sequence Match ( AT3G45980.1 )
(BLAST)
001: MAPRAEKKPA EKKPAAEKPV EEKSKAEKAP AEKKPKAGKK LPKEAGAGGD KKKKMKKKSV ETYKIYIFKV LKQVHPDIGI SSKAMGIMNS FINDIFEKLA
101: SESSKLARYN KKPTITSREI QTAVRLVLPG ELAKHAVSEG TKAVTKFTSS
Arabidopsis Description
H2BHistone H2B [Source:UniProtKB/TrEMBL;Acc:A0A178V9F6]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.