Factsheet for Os03t0279000-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 18022940
nucleus: 18203134
nucleus: 23777608
plasma membrane: 27800704
plastid: 27992503

msms PMID: 18022940 doi

F Tan, G Li, BR Chitteti, Z Peng

Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.

msms PMID: 18203134 doi

G Li, BR Nallamilli, F Tan, Z Peng

Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0460475-00	Rice	nucleus	66.45	95.28
GSMUA_Achr9P04060_001	Banana	nucleus	72.37	94.02
TraesCS4D01G205300.1	Wheat	nucleus	85.53	91.55
Os01t0839500-00	Rice	nucleus	83.55	91.37
OQU92807	Sorghum	nucleus	88.82	91.22
Zm00001d044247_P001	Maize	plastid	87.5	89.86
TraesCS4A01G099900.1	Wheat	nucleus	87.5	89.26
TraesCS4B01G204400.1	Wheat	nucleus	86.84	88.59
PGSC0003DMT400070382	Potato	nucleus	82.89	87.5
KRH26542	Soybean	nucleus	76.97	87.31
PGSC0003DMT400043578	Potato	nucleus	80.92	87.23
KRH22818	Soybean	nucleus	76.32	87.22
Os01t0149600-01	Rice	nucleus	87.5	86.93
Os05t0574300-00	Rice	nucleus	86.84	86.84
KRG92106	Soybean	nucleus	77.63	86.76
Solyc03g071620.1.1	Tomato	nucleus	80.26	86.52
PGSC0003DMT400077939	Potato	nucleus	82.89	86.3
Bra007018.1-P	Field mustard	nucleus	78.29	86.23
Solyc11g007920.1.1	Tomato	nucleus	81.58	86.11
GSMUA_Achr2P19080_001	Banana	nucleus	80.92	86.01
VIT_06s0004g04250.t01	Wine grape	nucleus	83.55	85.81
Os01t0153300-00	Rice	nucleus	87.5	85.81
Os01t0152900-00	Rice	nucleus	86.18	85.62
Os01t0153100-00	Rice	nucleus	86.18	85.62
Os01t0152300-00	Rice	nucleus	86.18	85.62
Solyc06g075800.1.1	Tomato	nucleus	82.24	85.62
VIT_06s0004g04230.t01	Wine grape	nucleus	82.24	85.62
KRH19721	Soybean	nucleus	78.29	85.61
KRG95819	Soybean	nucleus	77.63	85.51
Bra039810.1-P	Field mustard	nucleus	77.63	85.51
KRH67549	Soybean	nucleus	77.63	85.51
KRH34681	Soybean	nucleus	76.97	85.4
Solyc06g074790.1.1	Tomato	nucleus	79.61	85.21
Bra006685.1-P	Field mustard	nucleus	78.95	85.11
PGSC0003DMT400060096	Potato	nucleus	82.24	85.03
VIT_13s0019g05370.t01	Wine grape	nucleus	80.92	84.83
Solyc06g074780.1.1	Tomato	nucleus	79.61	84.62
PGSC0003DMT400018455	Potato	nucleus	79.61	84.62
Solyc05g055440.1.1	Tomato	nucleus	81.58	84.35
Solyc11g066430.1.1	Tomato	nucleus	77.63	84.29
AT3G46030.1	Thale cress	nucleus	80.26	84.14
AT2G37470.1	Thale cress	nucleus	76.32	84.06
PGSC0003DMT400022099	Potato	nucleus	79.61	84.03
PGSC0003DMT400022074	Potato	nucleus	79.61	84.03
AT5G59910.1	Thale cress	nucleus	82.89	84.0
PGSC0003DMT400070383	Potato	nucleus	78.29	83.8
PGSC0003DMT400018456	Potato	nucleus	78.29	83.8
AT5G02570.1	Thale cress	nucleus	72.37	83.33
AT3G53650.1	Thale cress	nucleus	75.66	83.33
Bra003150.1-P	Field mustard	nucleus	75.66	83.33
Bra011930.1-P	Field mustard	nucleus	81.58	83.22
KRH29833	Soybean	nucleus	78.29	83.22
Bra038267.1-P	Field mustard	nucleus	75.0	83.21
KRH29836	Soybean	nucleus	80.92	83.11
KRH29831	Soybean	nucleus	80.92	83.11
KRH29832	Soybean	nucleus	80.92	83.11
PGSC0003DMT400001108	Potato	nucleus	77.63	83.1
VIT_06s0004g04300.t01	Wine grape	nucleus	82.89	82.89
Solyc12g013510.1.1	Tomato	nucleus	75.66	82.73
Bra002520.1-P	Field mustard	nucleus	81.58	82.67
Solyc11g007930.1.1	Tomato	nucleus	75.0	82.61
KRH24830	Soybean	nucleus	80.92	82.55
KRH24831	Soybean	nucleus	80.92	82.55
KRH24833	Soybean	nucleus	80.92	82.55
Bra035677.1-P	Field mustard	nucleus	80.92	82.55
Bra020275.1-P	Field mustard	nucleus	76.97	82.39
PGSC0003DMT400074994	Potato	nucleus	79.61	82.31
Solyc06g005390.1.1	Tomato	nucleus	79.61	82.31
Bra002436.1-P	Field mustard	nucleus	76.32	82.27
AT3G45980.1	Thale cress	nucleus	80.92	82.0
AT1G07790.1	Thale cress	nucleus	79.61	81.76
AT5G22880.1	Thale cress	nucleus	77.63	81.38
Solyc02g038690.1.1	Tomato	nucleus	71.71	81.34
Bra006639.1-P	Field mustard	nucleus	76.97	81.25
AT3G09480.1	Thale cress	nucleus	67.11	80.95
AT2G28720.1	Thale cress	nucleus	79.61	80.13
Bra000483.1-P	Field mustard	nucleus	81.58	80.0
GSMUA_Achr7P15260_001	Banana	nucleus	78.29	78.29
PGSC0003DMT400074020	Potato	nucleus	65.13	73.33
CDX71015	Canola	nucleus	28.29	65.15
Solyc10g044580.1.1	Tomato	nucleus	56.58	63.7
Os08t0490900-00	Rice	nucleus	88.16	63.21
VIT_06s0004g04240.t01	Wine grape	nucleus	84.21	55.65
GSMUA_Achr6P33320_001	Banana	nucleus	70.39	51.69
Os09t0570850-00	Rice	nucleus	36.84	36.84
PGSC0003DMT400074018	Potato	nucleus	57.89	23.1

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:107278608	MapMan:12.1.3	EntrezGene:4324502	EntrezGene:4324504	UniProt:A3AGM4
ProteinID:ABF95290.1	EMBL:AP008209	ProteinID:BAB03632.1	ProteinID:BAB44053.1	ProteinID:BAB44055.1	ProteinID:BAF03965.1
ProteinID:BAF03967.1	ProteinID:BAS70450.1	ProteinID:BAS70455.1	ProteinID:BAS83551.1	ProteinID:EAZ10581.1	ProteinID:EAZ10583.1
ProteinID:EAZ26463.1	GO:GO:0000786	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694
GO:GO:0046982	InterPro:Histone-fold	InterPro:Histone_H2A/H2B/H3	InterPro:Histone_H2B	InterPro:IPR009072	EnsemblPlantsGene:Os03g0279000
EnsemblPlants:Os03t0279000-00	PFAM:PF00125	PRINTS:PR00621	ScanProsite:PS00357	PANTHER:PTHR23428	PANTHER:PTHR23428:SF108
SMART:SM00427	SUPFAM:SSF47113	UniParc:UPI0000F11029	RefSeq:XP_015617155.1	RefSeq:XP_015621595.1	RefSeq:XP_015630475.1
SEG:seg	:	:	:	:	:

Description

H2B1Similar to Histone H2B.1. (Os03t0279000-00)

Coordinates

chr3:+:9492827..9493512

Molecular Weight (calculated)

16508.1 Da

IEP (calculated)

10.850

GRAVY (calculated)

-0.743

Length

152 amino acids

Sequence
(BLAST)

001: MAPKAEKKPA EKKPAAGEEK SAEKAPAGKK PKAEKRLPAS KASSKEGGAG DKKGRKKAKK SVETYKIYIF KVLKQVHPDI GISSKAMSIM NSFINDIFEK
101: LAQEAARLAR YNKKPTITSR EIQTSVRLVL PGELAKHAVS EGTKAVTKFT SN

Best Arabidopsis Sequence Match ( AT3G45980.1 )
(BLAST)

001: MAPRAEKKPA EKKPAAEKPV EEKSKAEKAP AEKKPKAGKK LPKEAGAGGD KKKKMKKKSV ETYKIYIFKV LKQVHPDIGI SSKAMGIMNS FINDIFEKLA
101: SESSKLARYN KKPTITSREI QTAVRLVLPG ELAKHAVSEG TKAVTKFTSS

Arabidopsis Description

H2BHistone H2B [Source:UniProtKB/TrEMBL;Acc:A0A178V9F6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.