Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- endoplasmic reticulum 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
nucleus:
18022940
nucleus: 18203134 nucleus: 23777608 extracellular: 24083427 |
msms PMID:
18022940
doi
Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.
msms PMID:
18203134
doi
Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Os01t0149600-01 | Rice | nucleus | 98.69 | 98.69 |
Os01t0152900-00 | Rice | nucleus | 97.39 | 97.39 |
Os01t0153300-00 | Rice | nucleus | 96.73 | 95.48 |
Os01t0153100-00 | Rice | nucleus | 94.77 | 94.77 |
Os05t0574300-00 | Rice | nucleus | 93.46 | 94.08 |
Zm00001d050100_P001 | Maize | plastid | 89.54 | 91.33 |
Zm00001d025913_P001 | Maize | plastid | 89.54 | 91.33 |
EES15092 | Sorghum | nucleus | 89.54 | 90.73 |
Zm00001d032070_P001 | Maize | plastid | 88.89 | 90.67 |
GSMUA_Achr9P04060_001 | Banana | nucleus | 69.28 | 90.6 |
Os05t0460475-00 | Rice | nucleus | 61.44 | 88.68 |
Os01t0839500-00 | Rice | nucleus | 80.39 | 88.49 |
Os03t0279000-00 | Rice | nucleus | 85.62 | 86.18 |
Bra007018.1-P | Field mustard | nucleus | 77.12 | 85.51 |
KRH26542 | Soybean | nucleus | 74.51 | 85.07 |
Bra039810.1-P | Field mustard | nucleus | 76.47 | 84.78 |
KRH22818 | Soybean | nucleus | 73.2 | 84.21 |
KRH67549 | Soybean | nucleus | 75.82 | 84.06 |
KRG95819 | Soybean | nucleus | 75.82 | 84.06 |
KRG92106 | Soybean | nucleus | 74.51 | 83.82 |
Solyc03g071620.1.1 | Tomato | nucleus | 77.12 | 83.69 |
PGSC0003DMT400043578 | Potato | nucleus | 77.12 | 83.69 |
Solyc06g075800.1.1 | Tomato | nucleus | 79.74 | 83.56 |
PGSC0003DMT400077939 | Potato | nucleus | 79.74 | 83.56 |
KRH19721 | Soybean | nucleus | 75.82 | 83.45 |
AT2G37470.1 | Thale cress | nucleus | 75.16 | 83.33 |
Bra006685.1-P | Field mustard | nucleus | 76.47 | 82.98 |
Bra003150.1-P | Field mustard | nucleus | 74.51 | 82.61 |
KRH34681 | Soybean | nucleus | 73.86 | 82.48 |
PGSC0003DMT400070383 | Potato | nucleus | 76.47 | 82.39 |
Bra002436.1-P | Field mustard | nucleus | 75.82 | 82.27 |
AT3G46030.1 | Thale cress | nucleus | 77.78 | 82.07 |
Bra002520.1-P | Field mustard | nucleus | 80.39 | 82.0 |
GSMUA_Achr2P19080_001 | Banana | nucleus | 76.47 | 81.82 |
Bra038267.1-P | Field mustard | nucleus | 73.2 | 81.75 |
Solyc06g074790.1.1 | Tomato | nucleus | 75.82 | 81.69 |
Solyc11g066430.1.1 | Tomato | nucleus | 74.51 | 81.43 |
VIT_13s0019g05370.t01 | Wine grape | nucleus | 77.12 | 81.38 |
PGSC0003DMT400070382 | Potato | nucleus | 76.47 | 81.25 |
AT3G53650.1 | Thale cress | nucleus | 73.2 | 81.16 |
Solyc11g007930.1.1 | Tomato | nucleus | 73.2 | 81.16 |
VIT_06s0004g04250.t01 | Wine grape | nucleus | 78.43 | 81.08 |
AT5G02570.1 | Thale cress | nucleus | 69.93 | 81.06 |
PGSC0003DMT400060096 | Potato | nucleus | 77.78 | 80.95 |
VIT_06s0004g04230.t01 | Wine grape | nucleus | 77.12 | 80.82 |
AT5G22880.1 | Thale cress | nucleus | 76.47 | 80.69 |
AT3G45980.1 | Thale cress | nucleus | 79.08 | 80.67 |
AT5G59910.1 | Thale cress | nucleus | 79.08 | 80.67 |
Bra006639.1-P | Field mustard | nucleus | 75.82 | 80.56 |
KRH29833 | Soybean | nucleus | 75.16 | 80.42 |
KRH29836 | Soybean | nucleus | 77.78 | 80.41 |
KRH29831 | Soybean | nucleus | 77.78 | 80.41 |
KRH29832 | Soybean | nucleus | 77.78 | 80.41 |
Bra020275.1-P | Field mustard | nucleus | 74.51 | 80.28 |
PGSC0003DMT400018456 | Potato | nucleus | 74.51 | 80.28 |
PGSC0003DMT400074994 | Potato | nucleus | 77.12 | 80.27 |
Solyc05g055440.1.1 | Tomato | nucleus | 77.12 | 80.27 |
Solyc06g005390.1.1 | Tomato | nucleus | 77.12 | 80.27 |
KRH24833 | Soybean | nucleus | 77.78 | 79.87 |
KRH24831 | Soybean | nucleus | 77.78 | 79.87 |
PGSC0003DMT400022099 | Potato | nucleus | 75.16 | 79.86 |
PGSC0003DMT400022074 | Potato | nucleus | 75.16 | 79.86 |
Solyc11g007920.1.1 | Tomato | nucleus | 75.16 | 79.86 |
AT1G07790.1 | Thale cress | nucleus | 77.12 | 79.73 |
PGSC0003DMT400001108 | Potato | nucleus | 73.86 | 79.58 |
AT2G28720.1 | Thale cress | nucleus | 78.43 | 79.47 |
AT3G09480.1 | Thale cress | nucleus | 65.36 | 79.37 |
KRH24830 | Soybean | nucleus | 77.12 | 79.19 |
Solyc12g013510.1.1 | Tomato | nucleus | 71.9 | 79.14 |
Solyc02g038690.1.1 | Tomato | nucleus | 69.28 | 79.1 |
Bra035677.1-P | Field mustard | nucleus | 76.47 | 78.52 |
Bra011930.1-P | Field mustard | nucleus | 76.47 | 78.52 |
PGSC0003DMT400018455 | Potato | nucleus | 73.2 | 78.32 |
Solyc06g074780.1.1 | Tomato | nucleus | 73.2 | 78.32 |
VIT_06s0004g04300.t01 | Wine grape | nucleus | 77.12 | 77.63 |
GSMUA_Achr7P15260_001 | Banana | nucleus | 75.82 | 76.32 |
Bra000483.1-P | Field mustard | nucleus | 77.12 | 76.13 |
PGSC0003DMT400074020 | Potato | nucleus | 62.75 | 71.11 |
CDX71015 | Canola | nucleus | 28.1 | 65.15 |
Os08t0490900-00 | Rice | nucleus | 88.89 | 64.15 |
Solyc10g044580.1.1 | Tomato | nucleus | 54.25 | 61.48 |
VIT_06s0004g04240.t01 | Wine grape | nucleus | 77.78 | 51.74 |
GSMUA_Achr6P33320_001 | Banana | nucleus | 66.67 | 49.28 |
Os09t0570850-00 | Rice | nucleus | 34.64 | 34.87 |
PGSC0003DMT400074018 | Potato | nucleus | 55.56 | 22.31 |
Protein Annotations
Gene3D:1.10.20.10 | MapMan:12.1.3 | EntrezGene:4324495 | EntrezGene:4324512 | EMBL:AP014957 | ProteinID:BAB03624.1 |
ProteinID:BAB44008.1 | ProteinID:BAB44045.1 | ProteinID:BAF03940.1 | ProteinID:BAF03958.2 | ProteinID:BAH20863.1 | ProteinID:BAS70438.1 |
ProteinID:EAZ10547.1 | ProteinID:EAZ10572.1 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
GO:GO:0005694 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:Histone_H2A/H2B/H3 | InterPro:Histone_H2B | InterPro:IPR009072 |
EnsemblPlantsGene:Os01g0152300 | EnsemblPlants:Os01t0152300-00 | PFAM:PF00125 | PRINTS:PR00621 | ScanProsite:PS00357 | PANTHER:PTHR23428 |
PANTHER:PTHR23428:SF72 | UniProt:Q9LGI2 | SMART:SM00427 | SUPFAM:SSF47113 | UniParc:UPI00000A75BC | RefSeq:XP_015622397.1 |
RefSeq:XP_015645087.1 | SEG:seg | : | : | : | : |
Description
H2B.10Similar to Histone H2B.1. (Os01t0152300-00)
Coordinates
chr1:-:2820074..2820744
Molecular Weight (calculated)
16549.3 Da
IEP (calculated)
10.768
GRAVY (calculated)
-0.658
Length
153 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPKAEKKPA AKKPAEEEPA AEKAEKALAG KKPKAEKRLP AGKAEKSSGE GKKAGRKKAK KSVETYKIYI FKVLKQVHPD IGISSKAMSI MNSFINDIFE
101: KLAGESAKLA RYNKKPTITS REIQTSVRLV LPGELAKHAV SEGTKAVTKF TSA
101: KLAGESAKLA RYNKKPTITS REIQTSVRLV LPGELAKHAV SEGTKAVTKF TSA
001: MAPRAEKKPA EKKPAAEKPV EEKSKAEKAP AEKKPKAGKK LPKEAGAGGD KKKKMKKKSV ETYKIYIFKV LKQVHPDIGI SSKAMGIMNS FINDIFEKLA
101: SESSKLARYN KKPTITSREI QTAVRLVLPG ELAKHAVSEG TKAVTKFTSS
101: SESSKLARYN KKPTITSREI QTAVRLVLPG ELAKHAVSEG TKAVTKFTSS
Arabidopsis Description
H2BHistone H2B [Source:UniProtKB/TrEMBL;Acc:A0A178V9F6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.