Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G046500.1 | Wheat | nucleus | 44.37 | 95.45 |
| TraesCS4A01G099900.1 | Wheat | nucleus | 100.0 | 95.3 |
| TraesCS4B01G204400.1 | Wheat | nucleus | 99.3 | 94.63 |
| OQU92807 | Sorghum | nucleus | 96.48 | 92.57 |
| Zm00001d044247_P001 | Maize | plastid | 96.48 | 92.57 |
| TraesCS3D01G075900.1 | Wheat | nucleus | 87.32 | 91.18 |
| TraesCS3D01G099000.1 | Wheat | nucleus | 87.32 | 91.18 |
| TraesCS6D01G046200.1 | Wheat | nucleus, unclear | 86.62 | 90.44 |
| GSMUA_Achr9P04060_001 | Banana | nucleus | 73.94 | 89.74 |
| TraesCS6D01G046600.1 | Wheat | nucleus | 85.92 | 89.71 |
| TraesCS4D01G054200.1 | Wheat | nucleus | 95.77 | 89.47 |
| TraesCS6D01G046400.1 | Wheat | nucleus | 87.32 | 88.57 |
| TraesCS3D01G342400.1 | Wheat | nucleus | 85.92 | 88.41 |
| TraesCS3D01G351300.1 | Wheat | nucleus | 84.51 | 88.24 |
| TraesCS3D01G351400.1 | Wheat | nucleus | 84.51 | 88.24 |
| TraesCS3D01G088900.1 | Wheat | nucleus | 93.66 | 87.5 |
| TraesCS2D01G310800.1 | Wheat | nucleus | 92.96 | 86.84 |
| TraesCS7D01G477300.1 | Wheat | nucleus | 86.62 | 86.62 |
| TraesCS1D01G233300.1 | Wheat | nucleus | 92.25 | 86.18 |
| TraesCS7D01G477400.1 | Wheat | nucleus | 85.92 | 85.92 |
| TraesCS7D01G485700.1 | Wheat | nucleus | 83.8 | 85.61 |
| Os03t0279000-00 | Rice | nucleus | 91.55 | 85.53 |
| KRH22818 | Soybean | nucleus | 79.58 | 84.96 |
| KRH26542 | Soybean | nucleus | 79.58 | 84.33 |
| TraesCS1D01G194600.1 | Wheat | nucleus | 90.85 | 84.31 |
| TraesCS5D01G020000.1 | Wheat | nucleus | 92.96 | 84.08 |
| Bra007018.1-P | Field mustard | nucleus | 81.69 | 84.06 |
| Bra039810.1-P | Field mustard | nucleus | 81.69 | 84.06 |
| Bra038267.1-P | Field mustard | nucleus | 80.99 | 83.94 |
| KRG92106 | Soybean | nucleus | 79.58 | 83.09 |
| PGSC0003DMT400043578 | Potato | nucleus | 82.39 | 82.98 |
| KRH19721 | Soybean | nucleus | 80.99 | 82.73 |
| TraesCS1D01G396600.1 | Wheat | golgi, nucleus, unclear | 87.32 | 82.67 |
| AT2G37470.1 | Thale cress | nucleus | 80.28 | 82.61 |
| Bra003150.1-P | Field mustard | nucleus | 80.28 | 82.61 |
| TraesCS1D01G366300.1 | Wheat | nucleus | 88.73 | 82.35 |
| TraesCS1D01G373800.1 | Wheat | nucleus | 88.73 | 82.35 |
| TraesCS1D01G373900.1 | Wheat | nucleus | 88.73 | 82.35 |
| Bra002436.1-P | Field mustard | nucleus | 81.69 | 82.27 |
| Solyc03g071620.1.1 | Tomato | nucleus | 81.69 | 82.27 |
| TraesCS6D01G040600.1 | Wheat | nucleus | 83.8 | 82.07 |
| PGSC0003DMT400070382 | Potato | nucleus | 83.1 | 81.94 |
| KRG95819 | Soybean | nucleus | 79.58 | 81.88 |
| KRH67549 | Soybean | nucleus | 79.58 | 81.88 |
| AT5G02570.1 | Thale cress | nucleus | 76.06 | 81.82 |
| KRH34681 | Soybean | nucleus | 78.87 | 81.75 |
| Solyc06g074790.1.1 | Tomato | nucleus | 81.69 | 81.69 |
| Bra006685.1-P | Field mustard | nucleus | 80.99 | 81.56 |
| PGSC0003DMT400077939 | Potato | nucleus | 83.8 | 81.51 |
| VIT_06s0004g04230.t01 | Wine grape | nucleus | 83.8 | 81.51 |
| Solyc11g066430.1.1 | Tomato | nucleus | 80.28 | 81.43 |
| AT3G46030.1 | Thale cress | nucleus | 83.1 | 81.38 |
| TraesCS6D01G040200.1 | Wheat | nucleus | 83.1 | 81.38 |
| AT5G59910.1 | Thale cress | nucleus | 85.92 | 81.33 |
| Bra002520.1-P | Field mustard | nucleus | 85.92 | 81.33 |
| Bra006639.1-P | Field mustard | nucleus | 82.39 | 81.25 |
| Solyc11g007920.1.1 | Tomato | nucleus | 82.39 | 81.25 |
| GSMUA_Achr2P19080_001 | Banana | nucleus | 81.69 | 81.12 |
| PGSC0003DMT400018456 | Potato | nucleus | 80.99 | 80.99 |
| PGSC0003DMT400070383 | Potato | nucleus | 80.99 | 80.99 |
| PGSC0003DMT400060096 | Potato | nucleus | 83.8 | 80.95 |
| Solyc06g075800.1.1 | Tomato | nucleus | 83.1 | 80.82 |
| VIT_13s0019g05370.t01 | Wine grape | nucleus | 82.39 | 80.69 |
| TraesCS6D01G326800.1 | Wheat | nucleus, unclear | 87.32 | 80.52 |
| TraesCS3D01G351500.1 | Wheat | nucleus | 69.72 | 80.49 |
| KRH29831 | Soybean | nucleus | 83.8 | 80.41 |
| KRH29832 | Soybean | nucleus | 83.8 | 80.41 |
| KRH29836 | Soybean | nucleus | 83.8 | 80.41 |
| Bra020275.1-P | Field mustard | nucleus | 80.28 | 80.28 |
| Solyc05g055440.1.1 | Tomato | nucleus | 83.1 | 80.27 |
| AT3G09480.1 | Thale cress | nucleus | 71.13 | 80.16 |
| AT3G45980.1 | Thale cress | nucleus | 84.51 | 80.0 |
| KRH24831 | Soybean | nucleus | 83.8 | 79.87 |
| KRH24833 | Soybean | nucleus | 83.8 | 79.87 |
| VIT_06s0004g04250.t01 | Wine grape | nucleus | 83.1 | 79.73 |
| KRH29833 | Soybean | nucleus | 80.28 | 79.72 |
| PGSC0003DMT400018455 | Potato | nucleus | 80.28 | 79.72 |
| Solyc06g074780.1.1 | Tomato | nucleus | 80.28 | 79.72 |
| Solyc11g007930.1.1 | Tomato | nucleus | 77.46 | 79.71 |
| PGSC0003DMT400074994 | Potato | nucleus | 82.39 | 79.59 |
| Solyc06g005390.1.1 | Tomato | nucleus | 82.39 | 79.59 |
| PGSC0003DMT400001108 | Potato | nucleus | 79.58 | 79.58 |
| AT5G22880.1 | Thale cress | nucleus | 80.99 | 79.31 |
| Bra011930.1-P | Field mustard | nucleus | 83.1 | 79.19 |
| Bra035677.1-P | Field mustard | nucleus | 83.1 | 79.19 |
| KRH24830 | Soybean | nucleus | 83.1 | 79.19 |
| PGSC0003DMT400022099 | Potato | nucleus | 80.28 | 79.17 |
| PGSC0003DMT400022074 | Potato | nucleus | 79.58 | 78.47 |
| AT1G07790.1 | Thale cress | nucleus | 81.69 | 78.38 |
| Solyc02g038690.1.1 | Tomato | nucleus | 73.94 | 78.36 |
| TraesCS1D01G232900.1 | Wheat | nucleus | 86.62 | 78.34 |
| AT3G53650.1 | Thale cress | nucleus | 76.06 | 78.26 |
| AT2G28720.1 | Thale cress | nucleus | 83.1 | 78.15 |
| Solyc12g013510.1.1 | Tomato | nucleus | 76.06 | 77.7 |
| VIT_06s0004g04300.t01 | Wine grape | nucleus | 83.1 | 77.63 |
| GSMUA_Achr7P15260_001 | Banana | nucleus | 80.99 | 75.66 |
| Bra000483.1-P | Field mustard | nucleus | 82.39 | 75.48 |
| TraesCS5D01G393900.1 | Wheat | nucleus | 83.8 | 72.56 |
| PGSC0003DMT400074020 | Potato | nucleus | 67.61 | 71.11 |
| CDX71015 | Canola | nucleus | 30.28 | 65.15 |
| Solyc10g044580.1.1 | Tomato | nucleus | 58.45 | 61.48 |
| VIT_06s0004g04240.t01 | Wine grape | nucleus | 84.51 | 52.17 |
| GSMUA_Achr6P33320_001 | Banana | nucleus | 71.83 | 49.28 |
| TraesCS6D01G063200.1 | Wheat | nucleus | 59.86 | 42.93 |
| PGSC0003DMT400074018 | Potato | nucleus | 58.45 | 21.78 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.3 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0046982 |
| InterPro:Histone-fold | InterPro:Histone_H2A/H2B/H3 | InterPro:Histone_H2B | InterPro:IPR009072 | PFAM:PF00125 | PRINTS:PR00621 |
| ScanProsite:PS00357 | PANTHER:PTHR23428 | PANTHER:PTHR23428:SF84 | SMART:SM00427 | SUPFAM:SSF47113 | EnsemblPlantsGene:TraesCS4D01G205300 |
| EnsemblPlants:TraesCS4D01G205300.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr4D:-:352755070..352755519
Molecular Weight (calculated)
15537.0 Da
IEP (calculated)
10.882
GRAVY (calculated)
-0.729
Length
142 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPKAEKKPA EKKPAAETPA GKKPKAEKRL PASKSAKEGG DKKGRKKNKK SVETYKIYIF KVLKQVHPDI GISSKAMSIM NSFINDIFEK LAGEAAKLAR
101: YNKKPTITSR EIQTSVRLVL PGELAKHAVS EGTKAVTKFT SN
101: YNKKPTITSR EIQTSVRLVL PGELAKHAVS EGTKAVTKFT SN
001: MAPRAEKKPA EKKTAAERPV EENKAAEKAP AEKKPKAGKK LPPKEAGDKK KKRSKKNVET YKIYIFKVLK QVHPDIGISS KAMGIMNSFI NDIFEKLAQE
101: SSKLARYNKK PTITSREIQT AVRLVLPGEL AKHAVSEGTK AVTKFTSS
101: SSKLARYNKK PTITSREIQT AVRLVLPGEL AKHAVSEGTK AVTKFTSS
Arabidopsis Description
HTB1Histone H2B.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQQ4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.