Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P04060_001 | Banana | nucleus | 91.67 | 75.21 |
| TraesCS2A01G312400.1 | Wheat | nucleus | 91.67 | 74.58 |
| TraesCS6A01G086400.1 | Wheat | nucleus | 98.96 | 70.37 |
| TraesCS6A01G086200.1 | Wheat | nucleus | 97.92 | 69.63 |
| TraesCS6A01G040500.1 | Wheat | nucleus | 96.88 | 68.38 |
| TraesCS7B01G405800.1 | Wheat | nucleus | 97.92 | 67.63 |
| TraesCS7A01G490900.1 | Wheat | nucleus | 96.88 | 67.39 |
| TraesCS6A01G040400.1 | Wheat | nucleus | 96.88 | 66.91 |
| TraesCS7A01G491000.1 | Wheat | nucleus | 95.83 | 66.67 |
| TraesCS6A01G040200.1 | Wheat | nucleus | 94.79 | 65.94 |
| AT3G09480.1 | Thale cress | nucleus | 86.46 | 65.87 |
| TraesCS3A01G357500.1 | Wheat | nucleus | 92.71 | 65.44 |
| TraesCS6A01G034500.1 | Wheat | nucleus | 96.88 | 64.58 |
| TraesCS6A01G035000.1 | Wheat | nucleus | 96.88 | 64.58 |
| TraesCS3A01G357400.1 | Wheat | nucleus | 92.71 | 64.49 |
| AT5G02570.1 | Thale cress | nucleus | 88.54 | 64.39 |
| TraesCS7A01G491100.1 | Wheat | extracellular, nucleus, unclear | 94.79 | 64.08 |
| CDX71015 | Canola | nucleus | 43.75 | 63.64 |
| TraesCS1A01G190400.1 | Wheat | nucleus | 92.71 | 63.57 |
| Bra038267.1-P | Field mustard | nucleus | 90.62 | 63.5 |
| TraesCS3A01G102500.1 | Wheat | nucleus | 94.79 | 63.19 |
| TraesCS4A01G030500.1 | Wheat | nucleus | 92.71 | 63.12 |
| Bra007018.1-P | Field mustard | nucleus | 90.62 | 63.04 |
| Bra039810.1-P | Field mustard | nucleus | 90.62 | 63.04 |
| KRG92106 | Soybean | nucleus | 88.54 | 62.5 |
| AT2G37470.1 | Thale cress | nucleus | 89.58 | 62.32 |
| Bra003150.1-P | Field mustard | nucleus | 89.58 | 62.32 |
| KRG95819 | Soybean | nucleus | 89.58 | 62.32 |
| KRH67549 | Soybean | nucleus | 89.58 | 62.32 |
| KRH34681 | Soybean | nucleus | 88.54 | 62.04 |
| PGSC0003DMT400070383 | Potato | nucleus | 91.67 | 61.97 |
| TraesCS4A01G099900.1 | Wheat | nucleus | 95.83 | 61.74 |
| PGSC0003DMT400043578 | Potato | nucleus | 90.62 | 61.7 |
| Solyc03g071620.1.1 | Tomato | nucleus | 90.62 | 61.7 |
| Solyc02g038690.1.1 | Tomato | nucleus | 85.42 | 61.19 |
| KRH19721 | Soybean | nucleus | 88.54 | 61.15 |
| KRH22818 | Soybean | nucleus | 84.38 | 60.9 |
| AT3G53650.1 | Thale cress | nucleus | 87.5 | 60.87 |
| GSMUA_Achr2P19080_001 | Banana | nucleus | 90.62 | 60.84 |
| AT3G46030.1 | Thale cress | nucleus | 91.67 | 60.69 |
| KRH26542 | Soybean | nucleus | 84.38 | 60.45 |
| PGSC0003DMT400022074 | Potato | nucleus | 90.62 | 60.42 |
| PGSC0003DMT400022099 | Potato | nucleus | 90.62 | 60.42 |
| EES00304 | Sorghum | nucleus | 93.75 | 60.4 |
| Zm00001d039821_P001 | Maize | plastid | 93.75 | 60.4 |
| Bra002436.1-P | Field mustard | nucleus | 88.54 | 60.28 |
| Bra006685.1-P | Field mustard | nucleus | 88.54 | 60.28 |
| Solyc11g007930.1.1 | Tomato | nucleus | 86.46 | 60.14 |
| KRH29833 | Soybean | nucleus | 89.58 | 60.14 |
| TraesCS4A01G260400.1 | Wheat | nucleus | 94.79 | 59.87 |
| PGSC0003DMT400074994 | Potato | nucleus | 91.67 | 59.86 |
| Solyc06g005390.1.1 | Tomato | nucleus | 91.67 | 59.86 |
| EES00305 | Sorghum | nucleus | 92.71 | 59.73 |
| TraesCS3A01G088800.1 | Wheat | nucleus | 93.75 | 59.6 |
| PGSC0003DMT400077939 | Potato | nucleus | 90.62 | 59.59 |
| Solyc06g075800.1.1 | Tomato | nucleus | 90.62 | 59.59 |
| TraesCS1A01G361600.1 | Wheat | nucleus | 94.79 | 59.48 |
| TraesCS1A01G367900.1 | Wheat | nucleus | 94.79 | 59.48 |
| TraesCS1A01G368000.1 | Wheat | nucleus | 94.79 | 59.48 |
| Bra002520.1-P | Field mustard | nucleus | 92.71 | 59.33 |
| EES00399 | Sorghum | nucleus | 92.71 | 59.33 |
| VIT_13s0019g05370.t01 | Wine grape | nucleus | 89.58 | 59.31 |
| Solyc11g066430.1.1 | Tomato | nucleus | 86.46 | 59.29 |
| TraesCS5A01G384300.1 | Wheat | nucleus | 93.75 | 59.21 |
| PGSC0003DMT400060096 | Potato | nucleus | 90.62 | 59.18 |
| Solyc05g055440.1.1 | Tomato | nucleus | 90.62 | 59.18 |
| Bra020275.1-P | Field mustard | nucleus | 87.5 | 59.15 |
| TraesCS4A01G030400.1 | Wheat | nucleus | 94.79 | 59.09 |
| PGSC0003DMT400070382 | Potato | nucleus | 88.54 | 59.03 |
| Solyc11g007920.1.1 | Tomato | nucleus | 88.54 | 59.03 |
| Solyc12g013510.1.1 | Tomato | nucleus | 85.42 | 58.99 |
| VIT_06s0004g04230.t01 | Wine grape | nucleus | 89.58 | 58.9 |
| TraesCS1A01G388600.1 | Wheat | nucleus | 93.75 | 58.82 |
| AT1G07790.1 | Thale cress | nucleus | 90.62 | 58.78 |
| KRH29831 | Soybean | nucleus | 90.62 | 58.78 |
| KRH29832 | Soybean | nucleus | 90.62 | 58.78 |
| KRH29836 | Soybean | nucleus | 90.62 | 58.78 |
| VIT_06s0004g04250.t01 | Wine grape | nucleus | 90.62 | 58.78 |
| AT5G22880.1 | Thale cress | nucleus | 88.54 | 58.62 |
| EES15460 | Sorghum | nucleus | 92.71 | 58.55 |
| TraesCS1A01G228700.1 | Wheat | nucleus | 92.71 | 58.55 |
| PGSC0003DMT400001108 | Potato | nucleus | 86.46 | 58.45 |
| PGSC0003DMT400018456 | Potato | nucleus | 86.46 | 58.45 |
| Solyc06g074790.1.1 | Tomato | nucleus | 86.46 | 58.45 |
| KRH24830 | Soybean | nucleus | 90.62 | 58.39 |
| KRH24831 | Soybean | nucleus | 90.62 | 58.39 |
| KRH24833 | Soybean | nucleus | 90.62 | 58.39 |
| Bra006639.1-P | Field mustard | nucleus | 87.5 | 58.33 |
| AT3G45980.1 | Thale cress | nucleus | 90.62 | 58.0 |
| AT5G59910.1 | Thale cress | nucleus | 90.62 | 58.0 |
| Bra035677.1-P | Field mustard | nucleus | 89.58 | 57.72 |
| GSMUA_Achr7P15260_001 | Banana | nucleus | 90.62 | 57.24 |
| Bra011930.1-P | Field mustard | nucleus | 88.54 | 57.05 |
| AT2G28720.1 | Thale cress | nucleus | 89.58 | 56.95 |
| PGSC0003DMT400018455 | Potato | nucleus | 84.38 | 56.64 |
| Solyc06g074780.1.1 | Tomato | nucleus | 84.38 | 56.64 |
| VIT_06s0004g04300.t01 | Wine grape | nucleus | 89.58 | 56.58 |
| TraesCS5A01G051900.1 | Wheat | nucleus | 91.67 | 56.41 |
| Bra000483.1-P | Field mustard | nucleus | 89.58 | 55.48 |
| TraesCS4A01G311600.1 | Wheat | mitochondrion | 50.0 | 53.93 |
| PGSC0003DMT400074020 | Potato | nucleus | 73.96 | 52.59 |
| Solyc10g044580.1.1 | Tomato | nucleus | 65.62 | 46.67 |
| GSMUA_Achr6P33320_001 | Banana | nucleus | 91.67 | 42.51 |
| VIT_06s0004g04240.t01 | Wine grape | nucleus | 89.58 | 37.39 |
| Zm00001d048491_P001 | Maize | plastid | 91.67 | 36.97 |
| TraesCS6A01G061400.1 | Wheat | nucleus | 60.42 | 27.75 |
| PGSC0003DMT400074018 | Potato | nucleus | 64.58 | 16.27 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.3 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0046982 |
| InterPro:Histone-fold | InterPro:Histone_H2A/H2B/H3 | InterPro:Histone_H2B | InterPro:IPR009072 | PFAM:PF00125 | PRINTS:PR00621 |
| ScanProsite:PS00357 | PANTHER:PTHR23428 | PANTHER:PTHR23428:SF72 | SMART:SM00427 | SUPFAM:SSF47113 | EnsemblPlantsGene:TraesCS3A01G075800 |
| EnsemblPlants:TraesCS3A01G075800.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr3A:+:47046436..47046846
Molecular Weight (calculated)
10407.8 Da
IEP (calculated)
10.624
GRAVY (calculated)
-0.277
Length
96 amino acids
Sequence
(BLAST)
(BLAST)
1: MAPKAAEKKP VEKTPVLKQV HPDIGISSKA MSIMNSFIND IFEKLAGESA KLARYNKKPT ITSREIQTSV RLVLPGELAK HAVSEGTKAV TKFTSA
001: MAPRAEKKPA EKKTAAERPV EENKAAEKAP AEKKPKAGKK LPPKEAGDKK KKRSKKNVET YKIYIFKVLK QVHPDIGISS KAMGIMNSFI NDIFEKLAQE
101: SSKLARYNKK PTITSREIQT AVRLVLPGEL AKHAVSEGTK AVTKFTSS
101: SSKLARYNKK PTITSREIQT AVRLVLPGEL AKHAVSEGTK AVTKFTSS
Arabidopsis Description
HTB1Histone H2B.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQQ4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.