CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER89414
EER96770
EER97675
EES00304
EES00305
EES00399
EES00570
EES01357
EES03855
EES07386
EES15092
EES15460
EES18353
EES18816
KXG32191
OQU86696
OQU87075
OQU92807

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14620.1	EER89414	AT1G49590.1	23524848
AT5G14620.1	EES01357	AT2G19520.1	24855943
AT5G14620.1	EES00570	AT2G27040.1	24855943
AT5G14620.1	EES18816	AT2G27040.1	24855943
AT5G14620.1	OQU86696	AT2G27040.1	24855943
AT5G14620.1	KXG32191	AT3G16830.1	24855943
AT5G14620.1	EER96770	AT3G45980.1	24855943
AT5G14620.1	EER97675	AT3G45980.1	24855943
AT5G14620.1	EES00304	AT3G45980.1	24855943
AT5G14620.1	EES00305	AT3G45980.1	24855943
AT5G14620.1	EES00399	AT3G45980.1	24855943
AT5G14620.1	EES03855	AT3G45980.1	24855943
AT5G14620.1	EES07386	AT3G45980.1	24855943
AT5G14620.1	EES15092	AT3G45980.1	24855943
AT5G14620.1	EES15460	AT3G45980.1	24855943
AT5G14620.1	EES18353	AT3G45980.1	24855943
AT5G14620.1	OQU87075	AT3G45980.1	24855943
AT5G14620.1	OQU92807	AT3G45980.1	24855943
AT5G14620.1	EES00570	AT5G21150.1	24855943
AT5G14620.1	EES18816	AT5G21150.1	24855943
AT5G14620.1	OQU86696	AT5G21150.1	24855943

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G089730.3	Barley	nucleus	53.39	35.29
TraesCSU01G224900.1	Wheat	peroxisome	47.88	30.13
Os12t0108900-00	Rice	cytosol, nucleus	44.07	29.21
HORVU3Hr1G098990.3	Barley	cytosol, nucleus	52.97	27.47
TraesCS3B01G503900.1	Wheat	peroxisome	51.69	27.05
TraesCS3D01G454900.1	Wheat	peroxisome	51.27	26.83
TraesCS3A01G461200.1	Wheat	cytosol, nucleus, peroxisome	52.54	25.41
HORVU0Hr1G018360.1	Barley	cytosol, peroxisome	43.64	23.73
HORVU6Hr1G081790.1	Barley	nucleus	53.81	23.52
TraesCS6D01G114500.1	Wheat	mitochondrion	47.46	23.48
TraesCS6B01G152200.1	Wheat	mitochondrion	47.03	23.22
TraesCS3B01G504000.1	Wheat	nucleus	52.12	23.03
TraesCS5B01G239800.1	Wheat	nucleus	56.36	22.39
TraesCS3A01G461300.1	Wheat	cytosol, nucleus, peroxisome	50.0	22.14
EER95283	Sorghum	nucleus	53.39	21.88
TraesCSU01G140500.1	Wheat	nucleus	55.08	21.63
Os03t0110800-01	Rice	nucleus	54.66	21.61
TraesCS5A01G241800.1	Wheat	nucleus	56.36	21.52
TraesCS5D01G248300.1	Wheat	nucleus	55.93	21.36
TraesCS4B01G334900.1	Wheat	nucleus	54.24	21.23
TraesCSU01G124200.1	Wheat	nucleus	54.24	21.23
EES00541	Sorghum	nucleus	54.66	21.22
TraesCS6B01G369700.1	Wheat	nucleus	54.24	21.16
TraesCS4B01G388900.2	Wheat	nucleus	53.81	21.06
TraesCS6A01G338800.1	Wheat	nucleus	53.81	20.99
TraesCS5A01G553300.3	Wheat	nucleus	54.24	20.98
TraesCSU01G140600.1	Wheat	nucleus	55.08	20.97
TraesCS4B01G390500.4	Wheat	nucleus	53.39	20.97
TraesCS6D01G319500.2	Wheat	nucleus	52.97	20.66
TraesCS4D01G046800.1	Wheat	nucleus	52.54	20.63
GSMUA_Achr11P...	Banana	nucleus	40.25	20.61
HORVU3Hr1G098970.1	Barley	nucleus	44.07	20.51
OQU93413	Sorghum	nucleus	52.12	20.26
TraesCS4B01G047000.1	Wheat	nucleus	50.85	19.93
CDY40934	Canola	nucleus	36.02	19.63
TraesCS6A01G163300.1	Wheat	cytosol, nucleus, peroxisome	47.88	19.55
TraesCS6B01G186600.1	Wheat	nucleus	47.03	19.44
TraesCS6B01G107600.1	Wheat	nucleus	51.27	19.39
VIT_14s0066g01040.t01	Wine grape	cytosol	43.64	19.36
TraesCS6D01G147500.2	Wheat	cytosol, nucleus, peroxisome	47.03	19.07
CDX85589	Canola	nucleus	35.59	18.88
GSMUA_Achr8P33680_001	Banana	cytosol	40.68	18.86
TraesCS3B01G504200.1	Wheat	nucleus	48.31	18.75
KRG93258	Soybean	nucleus	44.92	18.28
Bra023480.1-P	Field mustard	cytosol	33.9	17.98
KRH56579	Soybean	nucleus	44.92	17.97
HORVU6Hr1G032260.8	Barley	nucleus, peroxisome	44.49	17.83
TraesCS3A01G461500.1	Wheat	nucleus	47.88	17.6
CDX69571	Canola	nucleus	40.68	17.27
CDY09872	Canola	nucleus	40.25	17.09
PGSC0003DMT400004867	Potato	nucleus	43.64	16.97
Solyc02g062740.2.1	Tomato	nucleus	42.8	16.75
Solyc04g005250.2.1	Tomato	nucleus	42.37	16.47
GSMUA_Achr3P23940_001	Banana	nucleus	41.1	16.14
CDX85590	Canola	cytosol	37.71	15.95
Solyc10g078190.1.1	Tomato	nucleus	41.1	15.93
PGSC0003DMT400018502	Potato	nucleus	41.1	15.93
TraesCS4A01G267400.1	Wheat	nucleus	28.81	15.89
CDX91035	Canola	cytosol	37.29	15.86
KRH69576	Soybean	nucleus	36.02	15.83
Bra008749.1-P	Field mustard	nucleus	40.25	15.81
AT5G14620.1	Thale cress	nucleus	41.53	15.65
AT5G15380.1	Thale cress	cytoskeleton, cytosol, nucleus	40.25	15.22
KRG93790	Soybean	cytosol	5.93	14.58
CDY40933	Canola	cytosol	38.14	14.15
Zm00001d044187_P001	Maize	cytosol	13.98	13.47
TraesCS3A01G067600.1	Wheat	nucleus	41.95	13.04
Bra004388.1-P	Field mustard	cytosol	37.71	10.93
KXG21224	Sorghum	cytosol	26.69	9.6
CDX95928	Canola	golgi	38.14	9.57
Os11t0109200-00	Rice	plastid	3.81	5.39
PGSC0003DMT400040081	Potato	mitochondrion	3.39	3.88
TraesCS6A01G124200.1	Wheat	peroxisome	2.97	3.27
Bra023479.1-P	Field mustard	cytosol	2.97	2.1
TraesCS4B01G388300.1	Wheat	cytosol	1.27	1.51
HORVU4Hr1G017920.1	Barley	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:OQU87185	EnsemblPlantsGene:SORBI_3003G224800	Gene3D:3.40.50.150	GO:GO:0006139	GO:GO:0006259	GO:GO:0006306
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR030380	InterPro:SAM_MeTfrase_DRM	PANTHER:PTHR23068
PANTHER:PTHR23068:SF3	PFscan:PS51680	ProteinID:OQU87185	ProteinID:OQU87185.1	UniParc:UPI0009DC879B	UniProt:A0A1W0VYJ6
MapMan:35.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:56097111..56098345

Molecular Weight (calculated)

26589.0 Da

IEP (calculated)

8.563

GRAVY (calculated)

-0.457

Length

236 amino acids

Sequence
(BLAST)

001: MGFRQDADIS VLVELICPSM AAGASYYERD ANNMEAGLDC CGSSVRKRTK FMEKKKINGK RFGGWARESG GSIDGRHEES MPLPNPMAGF NLPGDRVSMD
101: RLLPKEAIGH PFFYYENMAL APKGAWATIS SFLYDIQPEF VDSKFLCTAT RKRGYIHNLP IANRSPLIPL QPKTMHDAFR CTKQWRPSWD TRKHFNCIQT
201: CTASLALTGR IHDALAMSED PPSPEVQKYV LEQCMK

Best Arabidopsis Sequence Match ( AT5G14620.1 )
(BLAST)

001: MVIWNNDDDD FLEIDNFQSS PRSSPIHAMQ CRVENLAGVA VTTSSLSSPT ETTDLVQMGF SDEVFATLFD MGFPVEMISR AIKETGPNVE TSVIIDTISK
101: YSSDCEAGSS KSKAIDHFLA MGFDEEKVVK AIQEHGEDNM EAIANALLSC PEAKKLPAAV EEEDGIDWSS SDDDTNYTDM LNSDDEKDPN SNENGSKIRS
201: LVKMGFSELE ASLAVERCGE NVDIAELTDF LCAAQMAREF SEFYTEHEEQ KPRHNIKKRR FESKGEPRSS VDDEPIRLPN PMIGFGVPNE PGLITHRSLP
301: ELARGPPFFY YENVALTPKG VWETISRHLF EIPPEFVDSK YFCVAARKRG YIHNLPINNR FQIQPPPKYT IHDAFPLSKR WWPEWDKRTK LNCILTCTGS
401: AQLTNRIRVA LEPYNEEPEP PKHVQRYVID QCKKWNLVWV GKNKAAPLEP DEMESILGFP KNHTRGGGMS RTERFKSLGN SFQVDTVAYH LSVLKPIFPH
501: GINVLSLFTG IGGGEVALHR LQIKMKLVVS VEISKVNRNI LKDFWEQTNQ TGELIEFSDI QHLTNDTIEG LMEKYGGFDL VIGGSPCNNL AGGNRVSRVG
601: LEGDQSSLFF EYCRILEVVR ARMRGS

Arabidopsis Description

DRM2DNA (cytosine-5)-methyltransferase DRM2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M548]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.