Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os11t0109200-00 | Rice | plastid | 60.49 | 29.34 |
| PGSC0003DMT400040081 | Potato | mitochondrion | 69.14 | 27.18 |
| Zm00001d044187_P001 | Maize | cytosol | 72.84 | 24.08 |
| HORVU0Hr1G018360.1 | Barley | cytosol, peroxisome | 96.3 | 17.97 |
| KRG93790 | Soybean | cytosol | 16.05 | 13.54 |
| HORVU3Hr1G098990.3 | Barley | cytosol, nucleus | 75.31 | 13.41 |
| HORVU6Hr1G032260.8 | Barley | nucleus, peroxisome | 96.3 | 13.24 |
| TraesCS6A01G163300.1 | Wheat | cytosol, nucleus, peroxisome | 92.59 | 12.98 |
| TraesCS6B01G186600.1 | Wheat | nucleus | 90.12 | 12.78 |
| TraesCS6D01G147500.2 | Wheat | cytosol, nucleus, peroxisome | 91.36 | 12.71 |
| CDX85589 | Canola | nucleus | 66.67 | 12.13 |
| Bra023480.1-P | Field mustard | cytosol | 66.67 | 12.13 |
| HORVU6Hr1G081790.1 | Barley | nucleus | 80.25 | 12.04 |
| HORVU3Hr1G098970.1 | Barley | nucleus | 74.07 | 11.83 |
| CDY40934 | Canola | nucleus | 59.26 | 11.09 |
| Bra023479.1-P | Field mustard | cytosol | 44.44 | 10.81 |
| CDY09872 | Canola | nucleus | 72.84 | 10.61 |
| CDX69571 | Canola | nucleus | 71.6 | 10.43 |
| KRH69576 | Soybean | nucleus | 69.14 | 10.43 |
| Os03t0110800-01 | Rice | nucleus | 75.31 | 10.22 |
| CDX85590 | Canola | cytosol | 69.14 | 10.04 |
| Zm00001d048516_P001 | Maize | nucleus | 74.07 | 9.95 |
| CDX91035 | Canola | cytosol | 67.9 | 9.91 |
| EER95283 | Sorghum | nucleus | 70.37 | 9.9 |
| OQU93413 | Sorghum | nucleus | 74.07 | 9.88 |
| EES00541 | Sorghum | nucleus | 74.07 | 9.87 |
| VIT_14s0066g01040.t01 | Wine grape | cytosol | 64.2 | 9.77 |
| KRG93258 | Soybean | nucleus | 69.14 | 9.66 |
| Bra008749.1-P | Field mustard | nucleus | 71.6 | 9.65 |
| AT5G15380.1 | Thale cress | cytoskeleton, cytosol, nucleus | 74.07 | 9.62 |
| KRH56579 | Soybean | nucleus | 69.14 | 9.49 |
| Solyc02g062740.2.1 | Tomato | nucleus | 69.14 | 9.29 |
| Solyc10g078190.1.1 | Tomato | nucleus | 69.14 | 9.2 |
| PGSC0003DMT400018502 | Potato | nucleus | 69.14 | 9.2 |
| AT5G14620.1 | Thale cress | nucleus | 70.37 | 9.11 |
| Zm00001d027329_P002 | Maize | nucleus | 76.54 | 8.77 |
| PGSC0003DMT400004867 | Potato | nucleus | 65.43 | 8.73 |
| Solyc04g005250.2.1 | Tomato | nucleus | 65.43 | 8.73 |
| CDY40933 | Canola | cytosol | 67.9 | 8.65 |
| HORVU7Hr1G000410.34 | Barley | mitochondrion | 50.62 | 6.93 |
| Bra004388.1-P | Field mustard | cytosol | 67.9 | 6.76 |
| HORVU7Hr1G000490.1 | Barley | cytosol | 2.47 | 6.25 |
| HORVU5Hr1G012110.2 | Barley | cytosol | 49.38 | 6.19 |
| CDX95928 | Canola | golgi | 67.9 | 5.85 |
| HORVU4Hr1G089730.3 | Barley | nucleus | 20.99 | 4.76 |
| GSMUA_Achr8P33680_001 | Banana | cytosol | 29.63 | 4.72 |
| Os12t0108900-00 | Rice | cytosol, nucleus | 19.75 | 4.49 |
| GSMUA_Achr3P23940_001 | Banana | nucleus | 33.33 | 4.49 |
| GSMUA_Achr11P... | Banana | nucleus | 18.52 | 3.25 |
| OQU87185 | Sorghum | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G017920.1 | EnsemblPlantsGene:HORVU4Hr1G017920 | Gene3D:3.40.50.150 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006306 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | InterPro:IPR030380 | InterPro:SAM_MeTfrase_DRM | PANTHER:PTHR23068 |
| PANTHER:PTHR23068:SF3 | PFscan:PS51680 | UniParc:UPI000B46972B | UniProt:A0A287NER5 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chrchr4H:-:80527570..80528767
Molecular Weight (calculated)
8956.9 Da
IEP (calculated)
10.424
GRAVY (calculated)
-0.027
Length
81 amino acids
Sequence
(BLAST)
(BLAST)
1: MESLLGFPRD HTRGVVKTER YRSLANSFQV DTIAYHLSVL RDMFPNGINV LSLSTEIGGG AVALHRLGIR MRTVVSVEKG N
001: MVMSHIFLIS QIQEVEHGDS DDVNWNTDDD ELAIDNFQFS PSPVHISATS PNSIQNRISD ETVASFVEMG FSTQMIARAI EETAGANMEP MMILETLFNY
101: SASTEASSSK SKVINHFIAM GFPEEHVIKA MQEHGDEDVG EITNALLTYA EVDKLRESED MNININDDDD DNLYSLSSDD EEDELNNSSN EDRILQALIK
201: MGYLREDAAI AIERCGEDAS MEEVVDFICA AQMARQFDEI YAEPDKKELM NNNKKRRTYT ETPRKPNTDQ LISLPKEMIG FGVPNHPGLM MHRPVPIPDI
301: ARGPPFFYYE NVAMTPKGVW AKISSHLYDI VPEFVDSKHF CAAARKRGYI HNLPIQNRFQ IQPPQHNTIQ EAFPLTKRWW PSWDGRTKLN CLLTCIASSR
401: LTEKIREALE RYDGETPLDV QKWVMYECKK WNLVWVGKNK LAPLDADEME KLLGFPRDHT RGGGISTTDR YKSLGNSFQV DTVAYHLSVL KPLFPNGINV
501: LSLFTGIGGG EVALHRLQIK MNVVVSVEIS DANRNILRSF WEQTNQKGIL REFKDVQKLD DNTIERLMDE YGGFDLVIGG SPCNNLAGGN RHHRVGLGGE
601: HSSLFFDYCR ILEAVRRKAR HMRR
101: SASTEASSSK SKVINHFIAM GFPEEHVIKA MQEHGDEDVG EITNALLTYA EVDKLRESED MNININDDDD DNLYSLSSDD EEDELNNSSN EDRILQALIK
201: MGYLREDAAI AIERCGEDAS MEEVVDFICA AQMARQFDEI YAEPDKKELM NNNKKRRTYT ETPRKPNTDQ LISLPKEMIG FGVPNHPGLM MHRPVPIPDI
301: ARGPPFFYYE NVAMTPKGVW AKISSHLYDI VPEFVDSKHF CAAARKRGYI HNLPIQNRFQ IQPPQHNTIQ EAFPLTKRWW PSWDGRTKLN CLLTCIASSR
401: LTEKIREALE RYDGETPLDV QKWVMYECKK WNLVWVGKNK LAPLDADEME KLLGFPRDHT RGGGISTTDR YKSLGNSFQV DTVAYHLSVL KPLFPNGINV
501: LSLFTGIGGG EVALHRLQIK MNVVVSVEIS DANRNILRSF WEQTNQKGIL REFKDVQKLD DNTIERLMDE YGGFDLVIGG SPCNNLAGGN RHHRVGLGGE
601: HSSLFFDYCR ILEAVRRKAR HMRR
Arabidopsis Description
DRM1DNA (cytosine-5)-methyltransferase DRM1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXE5]
SUBAcon: [cytoskeleton,nucleus,cytosol]
SUBAcon: [cytoskeleton,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.