Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU87185 | Sorghum | cytosol | 35.29 | 53.39 |
| HORVU3Hr1G098990.3 | Barley | cytosol, nucleus | 65.27 | 51.21 |
| Os12t0108900-00 | Rice | cytosol, nucleus | 45.1 | 45.22 |
| TraesCS4B01G390500.4 | Wheat | nucleus | 74.79 | 44.43 |
| TraesCSU01G140500.1 | Wheat | nucleus | 74.23 | 44.09 |
| TraesCSU01G140600.1 | Wheat | nucleus | 74.23 | 42.74 |
| HORVU6Hr1G081790.1 | Barley | nucleus | 64.43 | 42.59 |
| HORVU0Hr1G018360.1 | Barley | cytosol, peroxisome | 51.54 | 42.4 |
| HORVU3Hr1G098970.1 | Barley | nucleus | 56.3 | 39.65 |
| TraesCS6B01G107600.1 | Wheat | nucleus | 68.35 | 39.1 |
| Os03t0110800-01 | Rice | nucleus | 57.98 | 34.67 |
| KRG93790 | Soybean | cytosol | 9.24 | 34.38 |
| Zm00001d048516_P001 | Maize | nucleus | 56.86 | 33.66 |
| EES00541 | Sorghum | nucleus | 55.18 | 32.4 |
| EER95283 | Sorghum | nucleus | 51.54 | 31.94 |
| OQU93413 | Sorghum | nucleus | 53.78 | 31.63 |
| Zm00001d044187_P001 | Maize | cytosol | 21.57 | 31.43 |
| HORVU6Hr1G032260.8 | Barley | nucleus, peroxisome | 51.54 | 31.24 |
| CDY40934 | Canola | nucleus | 35.57 | 29.33 |
| Zm00001d027329_P002 | Maize | nucleus | 56.86 | 28.71 |
| VIT_14s0066g01040.t01 | Wine grape | cytosol | 42.3 | 28.38 |
| KRG93258 | Soybean | nucleus | 45.94 | 28.28 |
| KRH56579 | Soybean | nucleus | 46.22 | 27.97 |
| CDY09872 | Canola | nucleus | 42.02 | 26.98 |
| KRH69576 | Soybean | nucleus | 40.34 | 26.82 |
| CDX69571 | Canola | nucleus | 41.74 | 26.8 |
| GSMUA_Achr8P33680_001 | Banana | cytosol | 38.1 | 26.72 |
| CDX85589 | Canola | nucleus | 33.05 | 26.52 |
| Bra023480.1-P | Field mustard | cytosol | 32.77 | 26.29 |
| Solyc02g062740.2.1 | Tomato | nucleus | 43.42 | 25.7 |
| Bra008749.1-P | Field mustard | nucleus | 42.58 | 25.29 |
| PGSC0003DMT400004867 | Potato | nucleus | 42.58 | 25.04 |
| Solyc10g078190.1.1 | Tomato | nucleus | 42.3 | 24.79 |
| PGSC0003DMT400018502 | Potato | nucleus | 42.3 | 24.79 |
| CDX91035 | Canola | cytosol | 37.82 | 24.32 |
| GSMUA_Achr11P... | Banana | nucleus | 31.37 | 24.3 |
| CDX85590 | Canola | cytosol | 37.82 | 24.19 |
| GSMUA_Achr3P23940_001 | Banana | nucleus | 40.62 | 24.13 |
| Solyc04g005250.2.1 | Tomato | nucleus | 40.9 | 24.05 |
| AT5G14620.1 | Thale cress | nucleus | 42.02 | 23.96 |
| AT5G15380.1 | Thale cress | cytoskeleton, cytosol, nucleus | 39.78 | 22.76 |
| CDY40933 | Canola | cytosol | 39.22 | 22.01 |
| HORVU4Hr1G017920.1 | Barley | cytosol | 4.76 | 20.99 |
| PGSC0003DMT400040081 | Potato | mitochondrion | 11.48 | 19.9 |
| Bra004388.1-P | Field mustard | cytosol | 39.78 | 17.44 |
| CDX95928 | Canola | golgi | 39.5 | 15.0 |
| HORVU7Hr1G000410.34 | Barley | mitochondrion | 24.09 | 14.53 |
| Os11t0109200-00 | Rice | plastid | 6.72 | 14.37 |
| HORVU5Hr1G012110.2 | Barley | cytosol | 23.81 | 13.16 |
| HORVU7Hr1G000490.1 | Barley | cytosol | 1.12 | 12.5 |
| Bra023479.1-P | Field mustard | cytosol | 8.4 | 9.01 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G089730.3 | EnsemblPlantsGene:HORVU4Hr1G089730 | Gene3D:3.40.50.150 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006306 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | InterPro:IPR030380 | InterPro:SAM-dependent_MTases | InterPro:SAM_MeTfrase_DRM |
| PANTHER:PTHR23068 | PANTHER:PTHR23068:SF3 | PFscan:PS51680 | SUPFAM:SSF53335 | UniParc:UPI000B4896E6 | UniProt:A0A287Q3W7 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr4H:-:643447233..643450504
Molecular Weight (calculated)
40854.8 Da
IEP (calculated)
8.989
GRAVY (calculated)
-0.532
Length
357 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEKDEKIKS LRGMGFSEDE AKMTILICGV DADISVLVDS ITASQVEEAC HSRNLSDRQV TARCFDSFGG RKRARLTEES KKRRRRYGGG AQGNRPSLDG
101: SDEEPMPLPN PMIGFNLPGW GLSMTRVLPE LAIGPPYFYY ENVARAPKGV WAKISRFLFD IQPEFVDSLH LCAAARKRGY IHNLPTENRS PILPLPPKTI
201: FEAFPHYKKW WPSWDQRTHL NCLQTCMASA KEAERIQQAL SSSGNPPPQS VQKYVRRQCS KWNLVWIGKH KVAPLEPHEI EYLLGFPKDR SHERLRQNTE
301: IQVSWELIPS RYSRLSLVSA EGHVSQWCLC AILVHWYWRR RGCLAQAWDS HEGSSFC
101: SDEEPMPLPN PMIGFNLPGW GLSMTRVLPE LAIGPPYFYY ENVARAPKGV WAKISRFLFD IQPEFVDSLH LCAAARKRGY IHNLPTENRS PILPLPPKTI
201: FEAFPHYKKW WPSWDQRTHL NCLQTCMASA KEAERIQQAL SSSGNPPPQS VQKYVRRQCS KWNLVWIGKH KVAPLEPHEI EYLLGFPKDR SHERLRQNTE
301: IQVSWELIPS RYSRLSLVSA EGHVSQWCLC AILVHWYWRR RGCLAQAWDS HEGSSFC
001: MVIWNNDDDD FLEIDNFQSS PRSSPIHAMQ CRVENLAGVA VTTSSLSSPT ETTDLVQMGF SDEVFATLFD MGFPVEMISR AIKETGPNVE TSVIIDTISK
101: YSSDCEAGSS KSKAIDHFLA MGFDEEKVVK AIQEHGEDNM EAIANALLSC PEAKKLPAAV EEEDGIDWSS SDDDTNYTDM LNSDDEKDPN SNENGSKIRS
201: LVKMGFSELE ASLAVERCGE NVDIAELTDF LCAAQMAREF SEFYTEHEEQ KPRHNIKKRR FESKGEPRSS VDDEPIRLPN PMIGFGVPNE PGLITHRSLP
301: ELARGPPFFY YENVALTPKG VWETISRHLF EIPPEFVDSK YFCVAARKRG YIHNLPINNR FQIQPPPKYT IHDAFPLSKR WWPEWDKRTK LNCILTCTGS
401: AQLTNRIRVA LEPYNEEPEP PKHVQRYVID QCKKWNLVWV GKNKAAPLEP DEMESILGFP KNHTRGGGMS RTERFKSLGN SFQVDTVAYH LSVLKPIFPH
501: GINVLSLFTG IGGGEVALHR LQIKMKLVVS VEISKVNRNI LKDFWEQTNQ TGELIEFSDI QHLTNDTIEG LMEKYGGFDL VIGGSPCNNL AGGNRVSRVG
601: LEGDQSSLFF EYCRILEVVR ARMRGS
101: YSSDCEAGSS KSKAIDHFLA MGFDEEKVVK AIQEHGEDNM EAIANALLSC PEAKKLPAAV EEEDGIDWSS SDDDTNYTDM LNSDDEKDPN SNENGSKIRS
201: LVKMGFSELE ASLAVERCGE NVDIAELTDF LCAAQMAREF SEFYTEHEEQ KPRHNIKKRR FESKGEPRSS VDDEPIRLPN PMIGFGVPNE PGLITHRSLP
301: ELARGPPFFY YENVALTPKG VWETISRHLF EIPPEFVDSK YFCVAARKRG YIHNLPINNR FQIQPPPKYT IHDAFPLSKR WWPEWDKRTK LNCILTCTGS
401: AQLTNRIRVA LEPYNEEPEP PKHVQRYVID QCKKWNLVWV GKNKAAPLEP DEMESILGFP KNHTRGGGMS RTERFKSLGN SFQVDTVAYH LSVLKPIFPH
501: GINVLSLFTG IGGGEVALHR LQIKMKLVVS VEISKVNRNI LKDFWEQTNQ TGELIEFSDI QHLTNDTIEG LMEKYGGFDL VIGGSPCNNL AGGNRVSRVG
601: LEGDQSSLFF EYCRILEVVR ARMRGS
Arabidopsis Description
DRM2DNA (cytosine-5)-methyltransferase DRM2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M548]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.