CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER89414
EER96770
EER97675
EES00304
EES00305
EES00399
EES00570
EES01357
EES03855
EES07386
EES15092
EES15460
EES18353
EES18816
KXG32191
OQU86696
OQU87075
OQU92807

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14620.1	EER89414	AT1G49590.1	23524848
AT5G14620.1	EES01357	AT2G19520.1	24855943
AT5G14620.1	EES00570	AT2G27040.1	24855943
AT5G14620.1	EES18816	AT2G27040.1	24855943
AT5G14620.1	OQU86696	AT2G27040.1	24855943
AT5G14620.1	KXG32191	AT3G16830.1	24855943
AT5G14620.1	EER96770	AT3G45980.1	24855943
AT5G14620.1	EER97675	AT3G45980.1	24855943
AT5G14620.1	EES00304	AT3G45980.1	24855943
AT5G14620.1	EES00305	AT3G45980.1	24855943
AT5G14620.1	EES00399	AT3G45980.1	24855943
AT5G14620.1	EES03855	AT3G45980.1	24855943
AT5G14620.1	EES07386	AT3G45980.1	24855943
AT5G14620.1	EES15092	AT3G45980.1	24855943
AT5G14620.1	EES15460	AT3G45980.1	24855943
AT5G14620.1	EES18353	AT3G45980.1	24855943
AT5G14620.1	OQU87075	AT3G45980.1	24855943
AT5G14620.1	OQU92807	AT3G45980.1	24855943
AT5G14620.1	EES00570	AT5G21150.1	24855943
AT5G14620.1	EES18816	AT5G21150.1	24855943
AT5G14620.1	OQU86696	AT5G21150.1	24855943

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d048516_P001	Maize	nucleus	88.82	89.55
OQU93413	Sorghum	nucleus	87.66	87.81
Os11t0109200-00	Rice	plastid	21.22	77.25
HORVU4Hr1G017920.1	Barley	cytosol	9.87	74.07
PGSC0003DMT400040081	Potato	mitochondrion	24.18	71.36
TraesCSU01G224900.1	Wheat	peroxisome	42.11	68.27
Os03t0110800-01	Rice	nucleus	66.94	68.17
TraesCS4B01G388300.1	Wheat	cytosol	22.2	67.84
TraesCS5B01G239800.1	Wheat	nucleus	64.47	65.99
HORVU3Hr1G098990.3	Barley	cytosol, nucleus	49.34	65.93
TraesCS6A01G124200.1	Wheat	peroxisome	23.19	65.89
EER95283	Sorghum	nucleus	62.34	65.8
TraesCS3D01G454900.1	Wheat	peroxisome	48.36	65.19
TraesCS3B01G503900.1	Wheat	peroxisome	48.36	65.19
HORVU6Hr1G081790.1	Barley	nucleus	56.58	63.7
TraesCS5A01G241800.1	Wheat	nucleus	64.64	63.59
TraesCS3A01G461200.1	Wheat	cytosol, nucleus, peroxisome	50.99	63.52
TraesCS5D01G248300.1	Wheat	nucleus	64.14	63.11
TraesCS4B01G390500.4	Wheat	nucleus	60.03	60.73
TraesCSU01G140500.1	Wheat	nucleus	60.03	60.73
TraesCS4B01G334900.1	Wheat	nucleus	60.03	60.53
TraesCS6B01G369700.1	Wheat	nucleus	60.2	60.5
HORVU0Hr1G018360.1	Barley	cytosol, peroxisome	43.09	60.37
TraesCSU01G124200.1	Wheat	nucleus	59.7	60.2
TraesCS6A01G338800.1	Wheat	nucleus	59.87	60.17
TraesCS4B01G388900.2	Wheat	nucleus	59.21	59.7
TraesCS6D01G319500.2	Wheat	nucleus	59.38	59.67
TraesCS6A01G163300.1	Wheat	cytosol, nucleus, peroxisome	56.58	59.52
TraesCS5A01G553300.3	Wheat	nucleus	59.54	59.34
TraesCS4D01G046800.1	Wheat	nucleus	58.55	59.23
Os12t0108900-00	Rice	cytosol, nucleus	34.54	58.99
TraesCSU01G140600.1	Wheat	nucleus	59.87	58.71
TraesCS4B01G047000.1	Wheat	nucleus	58.06	58.64
TraesCS6D01G147500.2	Wheat	cytosol, nucleus, peroxisome	55.76	58.25
TraesCS6B01G186600.1	Wheat	nucleus	53.78	57.27
TraesCS4A01G267400.1	Wheat	nucleus	39.97	56.78
TraesCS3A01G461300.1	Wheat	cytosol, nucleus, peroxisome	49.51	56.47
HORVU3Hr1G098970.1	Barley	nucleus	46.88	56.21
HORVU6Hr1G032260.8	Barley	nucleus, peroxisome	54.28	56.03
TraesCS3B01G504000.1	Wheat	nucleus	48.52	55.24
HORVU4Hr1G089730.3	Barley	nucleus	32.4	55.18
OQU87185	Sorghum	cytosol	21.22	54.66
TraesCS6B01G107600.1	Wheat	nucleus	54.77	53.37
VIT_14s0066g01040.t01	Wine grape	cytosol	43.91	50.19
KRG93258	Soybean	nucleus	47.7	50.0
TraesCS3A01G461500.1	Wheat	nucleus	52.14	49.38
KRG93790	Soybean	cytosol	7.73	48.96
Solyc02g062740.2.1	Tomato	nucleus	48.19	48.59
KRH56579	Soybean	nucleus	47.04	48.47
KRH69576	Soybean	nucleus	42.43	48.04
GSMUA_Achr8P33680_001	Banana	cytosol	39.97	47.74
TraesCS3B01G504200.1	Wheat	nucleus	47.2	47.2
Bra023480.1-P	Field mustard	cytosol	34.54	47.19
PGSC0003DMT400004867	Potato	nucleus	46.88	46.95
CDY40934	Canola	nucleus	33.06	46.42
Solyc04g005250.2.1	Tomato	nucleus	46.22	46.29
CDY09872	Canola	nucleus	42.27	46.22
CDX69571	Canola	nucleus	42.27	46.22
CDX85589	Canola	nucleus	33.72	46.07
Solyc10g078190.1.1	Tomato	nucleus	45.89	45.81
PGSC0003DMT400018502	Potato	nucleus	45.56	45.48
CDX85590	Canola	cytosol	41.28	44.98
GSMUA_Achr3P23940_001	Banana	nucleus	44.24	44.76
Bra008749.1-P	Field mustard	nucleus	43.59	44.09
CDX91035	Canola	cytosol	40.13	43.96
GSMUA_Achr11P...	Banana	nucleus	33.22	43.82
AT5G15380.1	Thale cress	cytoskeleton, cytosol, nucleus	44.9	43.75
TraesCS3A01G067600.1	Wheat	nucleus	52.96	42.42
AT5G14620.1	Thale cress	nucleus	43.59	42.33
TraesCS6B01G152200.1	Wheat	mitochondrion	33.06	42.05
TraesCS6D01G114500.1	Wheat	mitochondrion	32.89	41.93
CDY40933	Canola	cytosol	42.43	40.57
Bra023479.1-P	Field mustard	cytosol	21.55	39.34
Bra004388.1-P	Field mustard	cytosol	41.94	31.33
KXG21224	Sorghum	cytosol	30.1	27.9
CDX95928	Canola	golgi	42.27	27.34

Protein Annotations

KEGG:00270+2.1.1.37	Gene3D:1.10.8.10	MapMan:12.5.1.11	Gene3D:3.40.50.150	EntrezGene:8054628	UniProt:C5XGJ6
InterPro:C5_MeTfrase	EnsemblPlants:EES00541	ProteinID:EES00541	ProteinID:EES00541.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006259	GO:GO:0006306	GO:GO:0008150
GO:GO:0008152	GO:GO:0008168	GO:GO:0009987	GO:GO:0016740	InterPro:IPR001525	InterPro:IPR015940
InterPro:IPR030380	PFAM:PF00145	PFscan:PS50030	PFscan:PS51680	PANTHER:PTHR23068	PANTHER:PTHR23068:SF3
InterPro:SAM-dependent_MTases	InterPro:SAM_MeTfrase_DRM	EnsemblPlantsGene:SORBI_3003G124000	SUPFAM:SSF46934	SUPFAM:SSF53335	unigene:Sbi.16287
InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI0001A84A5C	RefSeq:XP_002455421.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:+:11267772..11272567

Molecular Weight (calculated)

67362.9 Da

IEP (calculated)

4.915

GRAVY (calculated)

-0.500

Length

608 amino acids

Sequence
(BLAST)

001: MAHCVGDSDG SDNFEWDSDG DGEEAASFNA AGASSSAMAS TNADAPGPST RVANGNGKAG PSASLVHKYM DMGFPEEIVL KAMKDNGDNG ADSLVELLLT
101: YQELGNDLKV DNGFASGCVP QNVDDSDDDD ILENWDDEDA GGRSTGVANS VDDSGDEDFL HEMSQTDEKV YSLVKMGFPE DEAALAVTRC GQDASISVLV
201: DSIYASQTAG DVYCGNLSDY EDNSYGGRNK GRFMDANKKR RKRYEGQAHG SRGPLDGSSD EPMPLPHPMV GFSLPHQCTR PVDRSLPSQA MGPPYFYYEN
301: VALAPKGVWT TISRFLYDIQ PEFVDSKYFC AAARKRGYIH NLPLENRSPL LPIPPKKISE AFPHTKRWWP SWDPRRQFNC LQTCVSSAKL LERIRVALTN
401: SSDPPPPRVQ KFVLEECRKW NLAWVGLNKV APLEPDEMEF LLGFPKDHTR GISRRERYRS LGNSFQVDTV AYHLSVLKDM YPQGMNVLSL FSGIGGAEVA
501: LHRLGIRMKT VISVEKSEVN RTILKSWWDQ TQTGLLIEIC DVQTLTSERI EAYVRRIGGF DLVIGGSPCN NLTGSNRYHR DGLEGEHSSL FYHYVRILDS
601: VKSIMERL

Best Arabidopsis Sequence Match ( AT5G14620.1 )
(BLAST)

001: MVIWNNDDDD FLEIDNFQSS PRSSPIHAMQ CRVENLAGVA VTTSSLSSPT ETTDLVQMGF SDEVFATLFD MGFPVEMISR AIKETGPNVE TSVIIDTISK
101: YSSDCEAGSS KSKAIDHFLA MGFDEEKVVK AIQEHGEDNM EAIANALLSC PEAKKLPAAV EEEDGIDWSS SDDDTNYTDM LNSDDEKDPN SNENGSKIRS
201: LVKMGFSELE ASLAVERCGE NVDIAELTDF LCAAQMAREF SEFYTEHEEQ KPRHNIKKRR FESKGEPRSS VDDEPIRLPN PMIGFGVPNE PGLITHRSLP
301: ELARGPPFFY YENVALTPKG VWETISRHLF EIPPEFVDSK YFCVAARKRG YIHNLPINNR FQIQPPPKYT IHDAFPLSKR WWPEWDKRTK LNCILTCTGS
401: AQLTNRIRVA LEPYNEEPEP PKHVQRYVID QCKKWNLVWV GKNKAAPLEP DEMESILGFP KNHTRGGGMS RTERFKSLGN SFQVDTVAYH LSVLKPIFPH
501: GINVLSLFTG IGGGEVALHR LQIKMKLVVS VEISKVNRNI LKDFWEQTNQ TGELIEFSDI QHLTNDTIEG LMEKYGGFDL VIGGSPCNNL AGGNRVSRVG
601: LEGDQSSLFF EYCRILEVVR ARMRGS

Arabidopsis Description

DRM2DNA (cytosine-5)-methyltransferase DRM2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M548]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.