Factsheet for TraesCS6B01G186600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G147500.2	Wheat	cytosol, nucleus, peroxisome	92.99	91.24
TraesCS6A01G163300.1	Wheat	cytosol, nucleus, peroxisome	91.24	90.14
HORVU4Hr1G017920.1	Barley	cytosol	12.78	90.12
HORVU0Hr1G018360.1	Barley	cytosol, peroxisome	62.52	82.26
HORVU6Hr1G032260.8	Barley	nucleus, peroxisome	84.24	81.66
TraesCS5B01G239800.1	Wheat	nucleus	69.88	67.17
TraesCS3B01G503900.1	Wheat	peroxisome	49.91	63.19
TraesCS4B01G334900.1	Wheat	nucleus	66.72	63.18
TraesCS4B01G388900.2	Wheat	nucleus	66.55	63.02
TraesCS6B01G369700.1	Wheat	nucleus	66.37	62.64
TraesCS4B01G390500.4	Wheat	nucleus	65.67	62.4
TraesCS4B01G388300.1	Wheat	cytosol	21.72	62.31
TraesCS3B01G504000.1	Wheat	nucleus	54.47	58.24
Os03t0110800-01	Rice	nucleus	59.72	57.12
TraesCS6B01G107600.1	Wheat	nucleus	59.02	54.01
EES00541	Sorghum	nucleus	57.27	53.78
Os11t0109200-00	Rice	plastid	15.59	53.29
OQU93413	Sorghum	nucleus	56.57	53.21
Zm00001d048516_P001	Maize	nucleus	56.04	53.07
TraesCS4B01G047000.1	Wheat	nucleus	55.69	52.82
EER95283	Sorghum	nucleus	52.54	52.08
Os12t0108900-00	Rice	cytosol, nucleus	31.0	49.72
Zm00001d044187_P001	Maize	cytosol	20.49	47.76
TraesCS3B01G504200.1	Wheat	nucleus	50.79	47.7
OQU87185	Sorghum	cytosol	19.44	47.03
Zm00001d027329_P002	Maize	nucleus	57.44	46.39
TraesCS6B01G152200.1	Wheat	mitochondrion	35.2	42.05
TraesCS4B01G012300.2	Wheat	cytosol	22.42	40.25
TraesCS5B01G057300.1	Wheat	cytosol	25.74	22.72

Protein Annotations

Gene3D:1.10.8.10	MapMan:12.5.1.11	Gene3D:3.40.50.150	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0006139	GO:GO:0006259	GO:GO:0006306	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
InterPro:IPR015940	InterPro:IPR030380	PFscan:PS50030	PFscan:PS51680	PANTHER:PTHR23068	PANTHER:PTHR23068:SF3
InterPro:SAM-dependent_MTases	InterPro:SAM_MeTfrase_DRM	SUPFAM:SSF46934	SUPFAM:SSF53335	EnsemblPlantsGene:TraesCS6B01G186600	EnsemblPlants:TraesCS6B01G186600.1
InterPro:UBA	InterPro:UBA-like_sf	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6B:-:212624770..212631175

Molecular Weight (calculated)

63659.2 Da

IEP (calculated)

4.684

GRAVY (calculated)

-0.596

Length

571 amino acids

Sequence
(BLAST)

001: MADRDSDGDD NVKFEWESDG EPEPSSAPAF RNSDAPGPST LDANERANEE APSTALIEEY VAMGFPKEIV VKGMKEIGHS DPDALLELIL TYQALGADDA
101: VGNCSTSGCA PQSVEEEDDD DLDFEHWDGD DDDVGGRETN CDDPGDEDFL REMSQKDKKI NLLVDMGFPE DEANIAIKRC GVDAELCVLV DSISASLVAG
201: DFNSRNISNH QVTDRCFDSF GGRKKARLME ESKKRRMQYA QGSGPSFAGS HDEPTRIPDP MVGFNLPSDR QPSVIRTLPE QAIGPPFFYF QNVARAPRGA
301: WTTISKKFYD IQPEFVDSKY FCAASRESGY IHNLPIENRE ALLPFPPKTV FDAFPHYKKW WPSWDPRRQL NCLQASVATA KLTDQIQRTL ARSGNPSVQK
401: HVVDECKTWD LVWVGKNKVA QLEPDEMESL LGFPRDHTRG VVKSERYKSL ANSFQVDTVA YHLSVLRDMF PNGVNVLSLS TGIGGGEVAL HRLGIRMRTV
501: VSVEEGETNR RIFEGWWDQT QTGKLVQIAN LKSLTNERIA SLVGRFRRFD LVIGGSQGHE NSEHDKVKRG S

Best Arabidopsis Sequence Match ( AT3G17310.1 )
(BLAST)

001: MADMRRRNGS GGSSNHERNE QILFPKPETL DFDLPCDTSF PQQIGDNAAS SSGSNVKSLL IEMGFCPTLV QKAIDENGQD DFELLLEILT KSTETEPPGP
101: SFHGLMEPKP EPDIEYETDR IRIALLTMKF PENLVDFALD RLGKDTPIDE MVDFIVAAQL AEKYAEESED SLDGAEINEE DEDVTPVTAR GPEVPNEQLF
201: ETMDKTLRLL EMGFSNDEIS MAIEKIGTKG QISVLAESIV TGEFPAECHD DLEDIEKKVS AAAPAVNRTC LSKSWRFVGV GAQKEDGGGG SSSGTANIKP
301: DPGIESFPFP ATDNVGETSR GKRPKDEDEN AYPEEYTGYD DRGKRLRPED MGDSSSFMET PWMQDEWKDN TYEFPSVMQP RLSQSLGPKV ARRPYFFYGQ
401: LGELSPSWWS KISGFLFGIH PEHVDTRLCS ALRRTEGYLH NLPTVNRFNT LPNPRLTIQD AMPHMRSWWP QWDIRKHFNS GTCSNMKDAT LLCERIGRRI
501: AECKGKPTQQ DQTLILRHCH TSNLIWIAPN ILSPLEPEHL ECIMGYPMNH TNIGGGRLAE RLKLFDYCFQ TDTLGYHLSV LKSMFPQGLT VLSLFSGIGG
601: AEIALDRLGI HLKGVVSVES CGLSRNILKR WWQTSGQTGE LVQIEEIKSL TAKRLETLMQ RFGGFDFVIC QNPSTPLDLS KEISNSEACE FDYTLFNEFA
701: RVTKRVRDMM

Arabidopsis Description

DRM3Probable inactive DNA (cytosine-5)-methyltransferase DRM3 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1E8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.