Factsheet for Os12t0108900-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0149600-01
Os01t0152300-00
Os01t0152900-00
Os01t0153100-00
Os01t0153300-00
Os01t0254100-01
Os01t0275200-00
Os01t0275600-01
Os01t0710000-01
Os01t0839500-00
Os03t0279000-00
Os04t0151800-02
Os05t0460475-00
Os05t0574300-00
Os06t0215200-01
Os08t0490900-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14620.1	Os06t0215200-01	AT1G49590.1	23524848
AT5G14620.1	Os01t0710000-01	AT2G19520.1	24855943
AT5G14620.1	Os01t0275200-00	AT2G27040.1	24855943
AT5G14620.1	Os01t0275600-01	AT2G27040.1	24855943
AT5G14620.1	Os04t0151800-02	AT2G27040.1	24855943
AT5G14620.1	Os01t0254100-01	AT3G16830.1	24855943
AT5G14620.1	Os01t0149600-01	AT3G45980.1	24855943
AT5G14620.1	Os01t0152300-00	AT3G45980.1	24855943
AT5G14620.1	Os01t0152900-00	AT3G45980.1	24855943
AT5G14620.1	Os01t0153100-00	AT3G45980.1	24855943
AT5G14620.1	Os01t0153300-00	AT3G45980.1	24855943
AT5G14620.1	Os01t0839500-00	AT3G45980.1	24855943
AT5G14620.1	Os03t0279000-00	AT3G45980.1	24855943
AT5G14620.1	Os05t0460475-00	AT3G45980.1	24855943
AT5G14620.1	Os05t0574300-00	AT3G45980.1	24855943
AT5G14620.1	Os08t0490900-00	AT3G45980.1	24855943
AT5G14620.1	Os01t0275200-00	AT5G21150.1	24855943
AT5G14620.1	Os01t0275600-01	AT5G21150.1	24855943
AT5G14620.1	Os04t0151800-02	AT5G21150.1	24855943

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG93790	Soybean	cytosol	12.36	45.83
HORVU4Hr1G089730.3	Barley	nucleus	45.22	45.1
OQU87185	Sorghum	cytosol	29.21	44.07
Os03t0110800-01	Rice	nucleus	69.94	41.71
TraesCS3D01G454900.1	Wheat	peroxisome	50.56	39.91
TraesCS3B01G503900.1	Wheat	peroxisome	50.56	39.91
TraesCS3A01G461200.1	Wheat	cytosol, nucleus, peroxisome	54.49	39.75
HORVU3Hr1G098990.3	Barley	cytosol, nucleus	50.28	39.34
HORVU0Hr1G018360.1	Barley	cytosol, peroxisome	44.94	36.87
TraesCSU01G224900.1	Wheat	peroxisome	38.48	36.53
HORVU6Hr1G081790.1	Barley	nucleus	54.78	36.11
TraesCS5B01G239800.1	Wheat	nucleus	58.43	35.02
Zm00001d048516_P001	Maize	nucleus	58.71	34.66
EES00541	Sorghum	nucleus	58.99	34.54
TraesCS5D01G248300.1	Wheat	nucleus	59.27	34.14
TraesCS5A01G241800.1	Wheat	nucleus	59.27	34.14
OQU93413	Sorghum	nucleus	57.87	33.94
HORVU3Hr1G098970.1	Barley	nucleus	47.75	33.53
EER95283	Sorghum	nucleus	53.37	32.99
TraesCS3A01G461300.1	Wheat	cytosol, nucleus, peroxisome	48.03	32.08
TraesCS4B01G388900.2	Wheat	nucleus	54.21	32.01
TraesCS6D01G114500.1	Wheat	mitochondrion	42.7	31.87
TraesCSU01G124200.1	Wheat	nucleus	53.65	31.68
TraesCS6B01G152200.1	Wheat	mitochondrion	42.42	31.59
TraesCS4B01G334900.1	Wheat	nucleus	53.37	31.51
TraesCS5A01G553300.3	Wheat	nucleus	53.93	31.48
TraesCS3B01G504000.1	Wheat	nucleus	47.19	31.46
TraesCS6A01G338800.1	Wheat	nucleus	53.37	31.41
TraesCS6B01G369700.1	Wheat	nucleus	52.81	31.07
TraesCS6B01G186600.1	Wheat	nucleus	49.72	31.0
TraesCS6D01G147500.2	Wheat	cytosol, nucleus, peroxisome	50.56	30.93
TraesCS4B01G047000.1	Wheat	nucleus	52.25	30.9
TraesCS6A01G163300.1	Wheat	cytosol, nucleus, peroxisome	50.0	30.8
TraesCS6D01G319500.2	Wheat	nucleus	52.25	30.74
TraesCS4B01G390500.4	Wheat	nucleus	51.69	30.62
TraesCSU01G140500.1	Wheat	nucleus	51.69	30.62
TraesCS4D01G046800.1	Wheat	nucleus	50.84	30.12
Zm00001d027329_P002	Maize	nucleus	58.99	29.7
TraesCSU01G140600.1	Wheat	nucleus	51.69	29.68
VIT_14s0066g01040.t01	Wine grape	cytosol	43.54	29.14
HORVU6Hr1G032260.8	Barley	nucleus, peroxisome	47.75	28.86
GSMUA_Achr8P33680_001	Banana	cytosol	41.01	28.68
TraesCS6B01G107600.1	Wheat	nucleus	49.72	28.37
TraesCS4A01G267400.1	Wheat	nucleus	33.15	27.57
CDY09872	Canola	nucleus	42.42	27.16
TraesCS3B01G504200.1	Wheat	nucleus	45.79	26.81
CDY40934	Canola	nucleus	32.3	26.56
CDX69571	Canola	nucleus	41.29	26.44
KRG93258	Soybean	nucleus	42.13	25.86
TraesCS3A01G461500.1	Wheat	nucleus	46.63	25.86
KRH56579	Soybean	nucleus	42.42	25.59
Bra008749.1-P	Field mustard	nucleus	42.13	24.96
PGSC0003DMT400004867	Potato	nucleus	42.13	24.71
KRH69576	Soybean	nucleus	37.08	24.58
Solyc02g062740.2.1	Tomato	nucleus	41.57	24.54
GSMUA_Achr3P23940_001	Banana	nucleus	41.29	24.46
Zm00001d044187_P001	Maize	cytosol	16.57	24.08
Solyc04g005250.2.1	Tomato	nucleus	41.01	24.05
Solyc10g078190.1.1	Tomato	nucleus	41.01	23.97
PGSC0003DMT400018502	Potato	nucleus	41.01	23.97
GSMUA_Achr11P...	Banana	nucleus	30.9	23.86
CDX85590	Canola	cytosol	37.08	23.66
CDX85589	Canola	nucleus	29.49	23.6
Bra023480.1-P	Field mustard	cytosol	29.21	23.37
AT5G14620.1	Thale cress	nucleus	41.01	23.32
CDX91035	Canola	cytosol	35.39	22.7
CDY40933	Canola	cytosol	39.61	22.17
AT5G15380.1	Thale cress	cytoskeleton, cytosol, nucleus	38.2	21.79
TraesCS3A01G067600.1	Wheat	nucleus	45.51	21.34
TraesCS6A01G124200.1	Wheat	peroxisome	12.08	20.09
PGSC0003DMT400040081	Potato	mitochondrion	11.52	19.9
HORVU4Hr1G017920.1	Barley	cytosol	4.49	19.75
TraesCS4B01G388300.1	Wheat	cytosol	10.67	19.1
Bra004388.1-P	Field mustard	cytosol	39.04	17.08
Os11t0109200-00	Rice	plastid	7.02	14.97
CDX95928	Canola	golgi	39.33	14.89
Os05t0133900-02	Rice	nucleus	23.88	12.5
Bra023479.1-P	Field mustard	cytosol	9.27	9.91

Protein Annotations

Gene3D:1.10.8.10	Gene3D:3.40.50.150	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006306	GO:GO:0008150	GO:GO:0008152
GO:GO:0008168	GO:GO:0009987	GO:GO:0016740	GO:GO:0032259	InterPro:IPR015940	InterPro:IPR030380
EnsemblPlantsGene:Os12g0108900	EnsemblPlants:Os12t0108900-00	PFscan:PS50030	PFscan:PS51680	PANTHER:PTHR23068	PANTHER:PTHR23068:SF3
InterPro:SAM-dependent_MTases	InterPro:SAM_MeTfrase_DRM	SUPFAM:SSF46934	SUPFAM:SSF53335	InterPro:UBA	InterPro:UBA-like_sf
UniParc:UPI0003939316	SEG:seg	:	:	:	:

Description

DOMAINS REARRANGED METHYLTRANSFERASE 1BSimilar to DRM-type DNA-methyltransferase. (Os12t0108900-00)

Coordinates

chr12:+:483967..487137

Molecular Weight (calculated)

40827.1 Da

IEP (calculated)

5.211

GRAVY (calculated)

-0.611

Length

356 amino acids

Sequence
(BLAST)

001: ILEEEDEEED VNWDEDDTVD NFDRATYSDG SGDEDFLQEM SEKDEKIKSL VSMGFPEDEA MRAITRCGLD ASVDLLVESI YAPASAGNVY FTNLSDYEDT
101: EFSSFGGRKK TKLIDGTKKK RERYRSRPQW NQVPFDGSHE EPMPLPNPMV GFSLPNDGLR SVHRNLPDHA LGPPFFYYEN VALAPKGVWT TISRFLYDIY
201: PEFVDSKYFC AAARKRGYIH NLPIENRSPV LPIPPKTISE AFPSTKMWWP SWDPRRQFNC LQTYVASAKH TERIRCALGR FGDALPPAVQ KSVLEECRKW
301: NLVWVGKNKV ATLEPDEMEF LLGYPRNHTR GVSRKRDIEL LGIHSKLIQL HTTSLC

Best Arabidopsis Sequence Match ( AT5G14620.1 )
(BLAST)

001: MVIWNNDDDD FLEIDNFQSS PRSSPIHAMQ CRVENLAGVA VTTSSLSSPT ETTDLVQMGF SDEVFATLFD MGFPVEMISR AIKETGPNVE TSVIIDTISK
101: YSSDCEAGSS KSKAIDHFLA MGFDEEKVVK AIQEHGEDNM EAIANALLSC PEAKKLPAAV EEEDGIDWSS SDDDTNYTDM LNSDDEKDPN SNENGSKIRS
201: LVKMGFSELE ASLAVERCGE NVDIAELTDF LCAAQMAREF SEFYTEHEEQ KPRHNIKKRR FESKGEPRSS VDDEPIRLPN PMIGFGVPNE PGLITHRSLP
301: ELARGPPFFY YENVALTPKG VWETISRHLF EIPPEFVDSK YFCVAARKRG YIHNLPINNR FQIQPPPKYT IHDAFPLSKR WWPEWDKRTK LNCILTCTGS
401: AQLTNRIRVA LEPYNEEPEP PKHVQRYVID QCKKWNLVWV GKNKAAPLEP DEMESILGFP KNHTRGGGMS RTERFKSLGN SFQVDTVAYH LSVLKPIFPH
501: GINVLSLFTG IGGGEVALHR LQIKMKLVVS VEISKVNRNI LKDFWEQTNQ TGELIEFSDI QHLTNDTIEG LMEKYGGFDL VIGGSPCNNL AGGNRVSRVG
601: LEGDQSSLFF EYCRILEVVR ARMRGS

Arabidopsis Description

DRM2DNA (cytosine-5)-methyltransferase DRM2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M548]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.