Factsheet for Zm00001d027329_P002

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plasma membrane 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
MultiLoc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005789_P001
Zm00001d007084_P001
Zm00001d008249_P012
Zm00001d008338_P001
Zm00001d011236_P001
Zm00001d011705_P002
Zm00001d012423_P001
Zm00001d020580_P001
Zm00001d025913_P001
Zm00001d032070_P001
Zm00001d039214_P025
Zm00001d039821_P001
Zm00001d040279_P012
Zm00001d040429_P012
Zm00001d042930_P001
Zm00001d043682_P002
Zm00001d043683_P001
Zm00001d044247_P001
Zm00001d044917_P001
Zm00001d048491_P001
Zm00001d050047_P001
Zm00001d050100_P001
Zm00001d051591_P001
Zm00001d052871_P001
Zm00001d053451_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14620.1	Zm00001d044917_P001	AT1G49590.1	23524848
AT5G14620.1	Zm00001d011705_P002	AT2G19520.1	24855943
AT5G14620.1	Zm00001d043682_P002	AT2G19520.1	24855943
AT5G14620.1	Zm00001d043683_P001	AT2G19520.1	24855943
AT5G14620.1	Zm00001d050047_P001	AT2G19520.1	24855943
AT5G14620.1	Zm00001d052871_P001	AT2G19520.1	24855943
AT5G14620.1	Zm00001d053451_P001	AT2G19520.1	24855943
AT5G14620.1	Zm00001d008249_P012	AT2G27040.1	24855943
AT5G14620.1	Zm00001d039214_P025	AT2G27040.1	24855943
AT5G14620.1	Zm00001d040429_P012	AT2G27040.1	24855943
AT5G14620.1	Zm00001d008338_P001	AT3G16830.1	24855943
AT5G14620.1	Zm00001d040279_P012	AT3G16830.1	24855943
AT5G14620.1	Zm00001d005789_P001	AT3G45980.1	24855943
AT5G14620.1	Zm00001d007084_P001	AT3G45980.1	24855943
AT5G14620.1	Zm00001d011236_P001	AT3G45980.1	24855943
AT5G14620.1	Zm00001d012423_P001	AT3G45980.1	24855943
AT5G14620.1	Zm00001d020580_P001	AT3G45980.1	24855943
AT5G14620.1	Zm00001d025913_P001	AT3G45980.1	24855943
AT5G14620.1	Zm00001d032070_P001	AT3G45980.1	24855943
AT5G14620.1	Zm00001d039821_P001	AT3G45980.1	24855943
AT5G14620.1	Zm00001d042930_P001	AT3G45980.1	24855943
AT5G14620.1	Zm00001d044247_P001	AT3G45980.1	24855943
AT5G14620.1	Zm00001d048491_P001	AT3G45980.1	24855943
AT5G14620.1	Zm00001d050100_P001	AT3G45980.1	24855943
AT5G14620.1	Zm00001d051591_P001	AT3G45980.1	24855943
AT5G14620.1	Zm00001d008249_P012	AT5G21150.1	24855943
AT5G14620.1	Zm00001d039214_P025	AT5G21150.1	24855943
AT5G14620.1	Zm00001d040429_P012	AT5G21150.1	24855943

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d048516_P001	Maize	nucleus	77.37	90.71
OQU93413	Sorghum	nucleus	75.25	87.64
Os11t0109200-00	Rice	plastid	18.39	77.84
HORVU4Hr1G017920.1	Barley	cytosol	8.77	76.54
PGSC0003DMT400040081	Potato	mitochondrion	21.07	72.33
TraesCSU01G224900.1	Wheat	peroxisome	37.34	70.4
Os03t0110800-01	Rice	nucleus	58.13	68.84
TraesCS4B01G388300.1	Wheat	cytosol	19.38	68.84
TraesCS5B01G239800.1	Wheat	nucleus	57.43	68.35
TraesCS3D01G454900.1	Wheat	peroxisome	42.72	66.96
TraesCS3B01G503900.1	Wheat	peroxisome	42.72	66.96
HORVU3Hr1G098990.3	Barley	cytosol, nucleus	43.0	66.81
TraesCS6A01G124200.1	Wheat	peroxisome	20.08	66.36
TraesCS5A01G241800.1	Wheat	nucleus	57.43	65.7
TraesCS5D01G248300.1	Wheat	nucleus	57.43	65.7
HORVU6Hr1G081790.1	Barley	nucleus	49.65	65.0
TraesCS3A01G461200.1	Wheat	cytosol, nucleus, peroxisome	44.84	64.96
Zm00001d044187_P001	Maize	cytosol	21.92	63.27
TraesCSU01G140500.1	Wheat	nucleus	53.61	63.06
TraesCS4B01G390500.4	Wheat	nucleus	53.32	62.73
TraesCSU01G124200.1	Wheat	nucleus	52.76	61.86
HORVU0Hr1G018360.1	Barley	cytosol, peroxisome	37.91	61.75
TraesCS6B01G369700.1	Wheat	nucleus	52.76	61.65
TraesCS4B01G388900.2	Wheat	nucleus	52.33	61.36
TraesCS4B01G334900.1	Wheat	nucleus	52.19	61.19
TraesCS6A01G338800.1	Wheat	nucleus	52.33	61.16
TraesCS5A01G553300.3	Wheat	nucleus	52.62	60.98
TraesCSU01G140600.1	Wheat	nucleus	53.47	60.97
TraesCS6D01G319500.2	Wheat	nucleus	52.05	60.83
TraesCS6A01G163300.1	Wheat	cytosol, nucleus, peroxisome	48.66	59.52
TraesCS4D01G046800.1	Wheat	nucleus	50.35	59.23
Os12t0108900-00	Rice	cytosol, nucleus	29.7	58.99
TraesCS4B01G047000.1	Wheat	nucleus	49.79	58.47
TraesCS6D01G147500.2	Wheat	cytosol, nucleus, peroxisome	48.09	58.42
TraesCS3A01G461300.1	Wheat	cytosol, nucleus, peroxisome	43.85	58.16
HORVU3Hr1G098970.1	Barley	nucleus	41.44	57.79
TraesCS6B01G186600.1	Wheat	nucleus	46.39	57.44
TraesCS4A01G267400.1	Wheat	nucleus	34.51	57.01
TraesCS3B01G504000.1	Wheat	nucleus	43.0	56.93
HORVU4Hr1G089730.3	Barley	nucleus	28.71	56.86
HORVU6Hr1G032260.8	Barley	nucleus, peroxisome	47.24	56.71
TraesCS6B01G107600.1	Wheat	nucleus	48.94	55.45
TraesCS3A01G461500.1	Wheat	nucleus	46.11	50.78
KRG93258	Soybean	nucleus	41.3	50.34
VIT_14s0066g01040.t01	Wine grape	cytosol	37.77	50.19
Solyc02g062740.2.1	Tomato	nucleus	42.15	49.42
KRH56579	Soybean	nucleus	41.02	49.15
KRG93790	Soybean	cytosol	6.65	48.96
TraesCS3B01G504200.1	Wheat	nucleus	41.87	48.68
PGSC0003DMT400004867	Potato	nucleus	41.02	47.78
KRH69576	Soybean	nucleus	36.21	47.67
Solyc04g005250.2.1	Tomato	nucleus	40.74	47.45
Bra023480.1-P	Field mustard	cytosol	29.7	47.19
CDX69571	Canola	nucleus	37.06	47.12
Solyc10g078190.1.1	Tomato	nucleus	40.45	46.96
PGSC0003DMT400018502	Potato	nucleus	40.31	46.8
GSMUA_Achr8P33680_001	Banana	cytosol	33.66	46.76
CDY09872	Canola	nucleus	36.63	46.58
CDY40934	Canola	nucleus	28.29	46.19
CDX85589	Canola	nucleus	28.85	45.84
GSMUA_Achr3P23940_001	Banana	nucleus	38.61	45.42
CDX85590	Canola	cytosol	35.78	45.34
GSMUA_Achr11P...	Banana	nucleus	29.42	45.12
CDX91035	Canola	cytosol	35.36	45.05
AT5G15380.1	Thale cress	cytoskeleton, cytosol, nucleus	39.32	44.55
Bra008749.1-P	Field mustard	nucleus	37.77	44.43
TraesCS3A01G067600.1	Wheat	nucleus	46.53	43.35
TraesCS6D01G114500.1	Wheat	mitochondrion	29.14	43.19
TraesCS6B01G152200.1	Wheat	mitochondrion	29.14	43.1
AT5G14620.1	Thale cress	nucleus	37.48	42.33
CDY40933	Canola	cytosol	36.49	40.57
Bra023479.1-P	Field mustard	cytosol	18.67	39.64
Bra004388.1-P	Field mustard	cytosol	36.07	31.33
CDX95928	Canola	golgi	36.78	27.66
Zm00001d010928_P001	Maize	nucleus	24.47	26.25

Protein Annotations

KEGG:00270+2.1.1.37	Gene3D:1.10.8.10	EntrezGene:100192479	MapMan:12.5.1.11	Gene3D:3.40.50.150	UniProt:A0A1D6JKV6
InterPro:C5_MeTfrase	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0006139	GO:GO:0006259	GO:GO:0006306	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0032259	InterPro:IPR001525
InterPro:IPR015940	InterPro:IPR030380	ProteinID:ONL92806.1	PFAM:PF00145	PFscan:PS50030	PFscan:PS51680
PANTHER:PTHR23068	PANTHER:PTHR23068:SF3	InterPro:SAM-dependent_MTases	InterPro:SAM_MeTfrase_DRM	SMART:SM00165	SUPFAM:SSF46934
SUPFAM:SSF53335	TMHMM:TMhelix	InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI000842F0C2	EnsemblPlantsGene:Zm00001d027329
EnsemblPlants:Zm00001d027329_P002	EnsemblPlants:Zm00001d027329_T002	SEG:seg	:	:	:

Description

DNA methyl transferase7DNA (cytosine-5)-methyltransferase DRM2

Coordinates

chr1:+:3031993..3036912

Molecular Weight (calculated)

78798.1 Da

IEP (calculated)

5.167

GRAVY (calculated)

-0.323

Length

707 amino acids

Sequence
(BLAST)

001: MAHWVSDSDG SDNFEWDSDG NGEEPANFNA AGAGSSALRS TNTDAPGPST RVIHLTDPYI CYYMFFSSLA TIVMFLFVCG AAFKVANGNG KAGPSASLVQ
101: KYMDMGFTEE IVRKAMKDNG DNGADSLVEL LLTYQELGND LKVDNGFASG CAPQTVDDSD DDDILENWDD EDADGGRSTR VANSIDDSED EVFSCAPLVT
201: VFVYFILLRN LLCIYFASII YTSALNMFNV NPVIAMLVYV ACQHRISQCS PVLSTQDFLN EMSQKDKKVD SLVKMGFPED EAALAITRCG QDASISVLVD
301: SIYASQTAGD GYCGNLSDYE GNSNGGRNKG RFMDGNKKKR KRYGGQAQGN RGPLDGSCEE PMPLPNPMVG FNLPDHWTRP VDRSLPTQAI GPPYFYYENV
401: ALAPKGVWTT ISRFLYDIQP EFVDSKYFCA AARKRGYIHN LPLERRSPLL PLPPKTIFEA FPRTKRWWPS WDPRRQFNCL QTCTSSAKLL ERIRVTLANS
501: SDPPPPLVQK FVLEECRKWN LAWVGLNKVA PLEPDEMEFL LGFPKDHTRG ISRTERYRSL GNSFQVDTVA YHLSVLKDRY PQGMNVLSLF TGIGGAEVAL
601: HRLGIRMNTV VSVEKSEVNR TILKSWWDQT QTGTLIEIND VQTLTADRIE AYIRRIGGFD LVIGGSPCNN LAGSNRHHRD GLEGEHSSLF YHYFRILDSV
701: KSIMERL

Best Arabidopsis Sequence Match ( AT3G17310.1 )
(BLAST)

001: MADMRRRNGS GGSSNHERNE QILFPKPETL DFDLPCDTSF PQQIGDNAAS SSGSNVKSLL IEMGFCPTLV QKAIDENGQD DFELLLEILT KSTETEPPGP
101: SFHGLMEPKP EPDIEYETDR IRIALLTMKF PENLVDFALD RLGKDTPIDE MVDFIVAAQL AEKYAEESED SLDGAEINEE DEDVTPVTAR GPEVPNEQLF
201: ETMDKTLRLL EMGFSNDEIS MAIEKIGTKG QISVLAESIV TGEFPAECHD DLEDIEKKVS AAAPAVNRTC LSKSWRFVGV GAQKEDGGGG SSSGTANIKP
301: DPGIESFPFP ATDNVGETSR GKRPKDEDEN AYPEEYTGYD DRGKRLRPED MGDSSSFMET PWMQDEWKDN TYEFPSVMQP RLSQSLGPKV ARRPYFFYGQ
401: LGELSPSWWS KISGFLFGIH PEHVDTRLCS ALRRTEGYLH NLPTVNRFNT LPNPRLTIQD AMPHMRSWWP QWDIRKHFNS GTCSNMKDAT LLCERIGRRI
501: AECKGKPTQQ DQTLILRHCH TSNLIWIAPN ILSPLEPEHL ECIMGYPMNH TNIGGGRLAE RLKLFDYCFQ TDTLGYHLSV LKSMFPQGLT VLSLFSGIGG
601: AEIALDRLGI HLKGVVSVES CGLSRNILKR WWQTSGQTGE LVQIEEIKSL TAKRLETLMQ RFGGFDFVIC QNPSTPLDLS KEISNSEACE FDYTLFNEFA
701: RVTKRVRDMM

Arabidopsis Description

DRM3Probable inactive DNA (cytosine-5)-methyltransferase DRM3 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1E8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.