Factsheet for Solyc10g078190.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400018502	Potato	nucleus	95.4	95.4
Solyc04g005250.2.1	Tomato	nucleus	73.23	73.48
Solyc02g062740.2.1	Tomato	nucleus	69.79	70.48
HORVU4Hr1G017920.1	Barley	cytosol	9.2	69.14
Os11t0109200-00	Rice	plastid	18.55	67.66
TraesCS6A01G124200.1	Wheat	peroxisome	21.35	60.75
VIT_14s0066g01040.t01	Wine grape	cytosol	52.05	59.59
TraesCSU01G224900.1	Wheat	peroxisome	35.96	58.4
HORVU3Hr1G098990.3	Barley	cytosol, nucleus	41.05	54.95
Zm00001d044187_P001	Maize	cytosol	22.0	54.69
KRG93790	Soybean	cytosol	8.54	54.17
TraesCS3D01G454900.1	Wheat	peroxisome	39.74	53.66
TraesCS3A01G461200.1	Wheat	cytosol, nucleus, peroxisome	40.72	50.82
Os03t0110800-01	Rice	nucleus	48.44	49.41
HORVU0Hr1G018360.1	Barley	cytosol, peroxisome	35.14	49.31
HORVU6Hr1G081790.1	Barley	nucleus	43.02	48.52
EER95283	Sorghum	nucleus	45.81	48.44
TraesCS3A01G461300.1	Wheat	cytosol, nucleus, peroxisome	41.54	47.47
Zm00001d048516_P001	Maize	nucleus	46.63	47.1
OQU93413	Sorghum	nucleus	46.31	46.46
TraesCSU01G124200.1	Wheat	nucleus	45.81	46.27
GSMUA_Achr8P33680_001	Banana	cytosol	38.59	46.17
TraesCS5A01G241800.1	Wheat	nucleus	46.8	46.12
TraesCS5D01G248300.1	Wheat	nucleus	46.63	45.95
EES00541	Sorghum	nucleus	45.81	45.89
TraesCS6A01G338800.1	Wheat	nucleus	44.99	45.29
HORVU3Hr1G098970.1	Barley	nucleus	37.6	45.17
TraesCS5A01G553300.3	Wheat	nucleus	44.99	44.92
TraesCSU01G140500.1	Wheat	nucleus	44.17	44.76
TraesCS6D01G319500.2	Wheat	nucleus	44.34	44.63
TraesCS4B01G012300.2	Wheat	cytosol	23.15	44.34
GSMUA_Achr11P...	Banana	nucleus	33.33	44.03
TraesCS4A01G267400.1	Wheat	nucleus	30.87	43.93
TraesCSU01G140600.1	Wheat	nucleus	44.34	43.55
TraesCS4D01G046800.1	Wheat	nucleus	42.53	43.09
GSMUA_Achr3P23940_001	Banana	nucleus	41.87	42.43
HORVU4Hr1G089730.3	Barley	nucleus	24.79	42.3
TraesCS6A01G163300.1	Wheat	cytosol, nucleus, peroxisome	40.07	42.21
TraesCS6D01G147500.2	Wheat	cytosol, nucleus, peroxisome	39.74	41.58
OQU87185	Sorghum	cytosol	15.93	41.1
Os12t0108900-00	Rice	cytosol, nucleus	23.97	41.01
HORVU6Hr1G032260.8	Barley	nucleus, peroxisome	39.57	40.92
Zm00001d027329_P002	Maize	nucleus	46.96	40.45
TraesCS3A01G461500.1	Wheat	nucleus	41.87	39.72
TraesCS3A01G067600.1	Wheat	nucleus	43.19	34.65
TraesCS6D01G114500.1	Wheat	mitochondrion	24.63	31.45
HORVU7Hr1G000490.1	Barley	cytosol	1.15	21.88
Solyc05g053260.2.1	Tomato	cytosol	19.05	20.68

Protein Annotations

KEGG:00270+2.1.1.37	Gene3D:1.10.8.10	MapMan:12.5.1.11	Gene3D:3.40.50.150	InterPro:C5_MeTfrase	GO:GO:0003674
GO:GO:0003824	GO:GO:0006139	GO:GO:0006259	GO:GO:0006306	GO:GO:0008150	GO:GO:0008152
GO:GO:0008168	GO:GO:0009987	GO:GO:0016740	InterPro:IPR001525	InterPro:IPR015940	InterPro:IPR030380
UniProt:K4D262	PFAM:PF00145	PFscan:PS50030	PFscan:PS51680	PANTHER:PTHR23068	PANTHER:PTHR23068:SF3
InterPro:SAM-dependent_MTases	InterPro:SAM_MeTfrase_DRM	SUPFAM:SSF53335	EnsemblPlantsGene:Solyc10g078190.1	EnsemblPlants:Solyc10g078190.1.1	InterPro:UBA
UniParc:UPI000276A0B0	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr10:-:60047509..60052035

Molecular Weight (calculated)

69096.0 Da

IEP (calculated)

4.922

GRAVY (calculated)

-0.464

Length

609 amino acids

Sequence
(BLAST)

001: MDKNLSGEDN DDIDWDTEDE LEIQEIQDTV FSSCTDLRTT GQHVVCCDVE ASSSSVPFRS KFIQQFVVMG FPEESIAKAI EQNGENSDLV LDSLLTFKAL
101: DDSPEEQPSV SPPLEPSISS DDSASEYNKI VLDNVYEDDS WSSDSDNYIN TVKQCYLNDE GSSLSEKEKM LLFLGNMGYP AEEASIAMDR CGPKASLPEL
201: VDFICAAQMS RAEDPYLLED VKPNLKDILN DCGGYKKRKM YNELCKRKKQ REISVEEPIR LPKPMIGFGI PTESVPRMVQ RILPEKIIGP PYFYYENVAL
301: APKGVWDTIK RHLYEIEPEF VDSKYFSATA RKRGYLHNLP IENRFPLFPL PPRTIHEALP LSKRWWPSWD TRSKLNCLQT AIGSARLTDK IRKAVEKYDG
401: EPPMEIQKYV LYHCKKWNLV WVGRNKVAPL EPDEVEMLLG FPKNHTRGGG ISRTDRYKSL GNSFQVDTVA YHLSVLRDLF PNGINVLSLF SGIGGAEVAL
501: YRLGVPLNNV VSVEKSEVNR NIVRSWWEQT NQRGNLIHFD DVQLLSRDRL KKLIESVGGF DLVIGGSPCN NLAGSNRVSR DGLEGKESSL FFDYVRILDD
601: VKSIMSRHR

Best Arabidopsis Sequence Match ( AT5G15380.1 )
(BLAST)

001: MVMSHIFLIS QIQEVEHGDS DDVNWNTDDD ELAIDNFQFS PSPVHISATS PNSIQNRISD ETVASFVEMG FSTQMIARAI EETAGANMEP MMILETLFNY
101: SASTEASSSK SKVINHFIAM GFPEEHVIKA MQEHGDEDVG EITNALLTYA EVDKLRESED MNININDDDD DNLYSLSSDD EEDELNNSSN EDRILQALIK
201: MGYLREDAAI AIERCGEDAS MEEVVDFICA AQMARQFDEI YAEPDKKELM NNNKKRRTYT ETPRKPNTDQ LISLPKEMIG FGVPNHPGLM MHRPVPIPDI
301: ARGPPFFYYE NVAMTPKGVW AKISSHLYDI VPEFVDSKHF CAAARKRGYI HNLPIQNRFQ IQPPQHNTIQ EAFPLTKRWW PSWDGRTKLN CLLTCIASSR
401: LTEKIREALE RYDGETPLDV QKWVMYECKK WNLVWVGKNK LAPLDADEME KLLGFPRDHT RGGGISTTDR YKSLGNSFQV DTVAYHLSVL KPLFPNGINV
501: LSLFTGIGGG EVALHRLQIK MNVVVSVEIS DANRNILRSF WEQTNQKGIL REFKDVQKLD DNTIERLMDE YGGFDLVIGG SPCNNLAGGN RHHRVGLGGE
601: HSSLFFDYCR ILEAVRRKAR HMRR

Arabidopsis Description

DRM1DNA (cytosine-5)-methyltransferase DRM1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXE5]
SUBAcon: [cytoskeleton,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.