Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- peroxisome 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G163300.1 | Wheat | cytosol, nucleus, peroxisome | 95.19 | 95.85 |
| TraesCS6B01G186600.1 | Wheat | nucleus | 91.24 | 92.99 |
| HORVU4Hr1G017920.1 | Barley | cytosol | 12.71 | 91.36 |
| HORVU0Hr1G018360.1 | Barley | cytosol, peroxisome | 64.95 | 87.1 |
| HORVU6Hr1G032260.8 | Barley | nucleus, peroxisome | 86.43 | 85.4 |
| TraesCS5D01G248300.1 | Wheat | nucleus | 71.99 | 67.8 |
| TraesCS3D01G454900.1 | Wheat | peroxisome | 52.06 | 67.18 |
| TraesCS6D01G319500.2 | Wheat | nucleus | 67.53 | 64.96 |
| Os03t0110800-01 | Rice | nucleus | 60.82 | 59.3 |
| Os11t0109200-00 | Rice | plastid | 16.84 | 58.68 |
| PGSC0003DMT400040081 | Potato | mitochondrion | 19.93 | 56.31 |
| EES00541 | Sorghum | nucleus | 58.25 | 55.76 |
| Zm00001d048516_P001 | Maize | nucleus | 57.04 | 55.06 |
| OQU93413 | Sorghum | nucleus | 57.22 | 54.86 |
| EER95283 | Sorghum | nucleus | 53.61 | 54.17 |
| TraesCS4D01G046800.1 | Wheat | nucleus | 55.67 | 53.91 |
| Zm00001d044187_P001 | Maize | cytosol | 22.16 | 52.65 |
| Os12t0108900-00 | Rice | cytosol, nucleus | 30.93 | 50.56 |
| Zm00001d027329_P002 | Maize | nucleus | 58.42 | 48.09 |
| OQU87185 | Sorghum | cytosol | 19.07 | 47.03 |
| KRG93790 | Soybean | cytosol | 7.22 | 43.75 |
| VIT_14s0066g01040.t01 | Wine grape | cytosol | 39.35 | 43.05 |
| TraesCS6D01G114500.1 | Wheat | mitochondrion | 35.05 | 42.77 |
| CDY40934 | Canola | nucleus | 31.27 | 42.03 |
| CDY09872 | Canola | nucleus | 39.69 | 41.55 |
| CDX69571 | Canola | nucleus | 39.52 | 41.37 |
| KRH69576 | Soybean | nucleus | 38.14 | 41.34 |
| KRG93258 | Soybean | nucleus | 40.89 | 41.03 |
| CDX85589 | Canola | nucleus | 30.93 | 40.45 |
| Solyc02g062740.2.1 | Tomato | nucleus | 41.75 | 40.3 |
| Bra023480.1-P | Field mustard | cytosol | 30.76 | 40.22 |
| KRH56579 | Soybean | nucleus | 40.55 | 40.0 |
| Solyc10g078190.1.1 | Tomato | nucleus | 41.58 | 39.74 |
| Bra008749.1-P | Field mustard | nucleus | 40.72 | 39.43 |
| PGSC0003DMT400018502 | Potato | nucleus | 40.89 | 39.08 |
| PGSC0003DMT400004867 | Potato | nucleus | 40.72 | 39.04 |
| CDX85590 | Canola | cytosol | 36.94 | 38.53 |
| Solyc04g005250.2.1 | Tomato | nucleus | 39.69 | 38.06 |
| CDX91035 | Canola | cytosol | 36.08 | 37.84 |
| AT5G15380.1 | Thale cress | cytoskeleton, cytosol, nucleus | 40.21 | 37.5 |
| GSMUA_Achr8P33680_001 | Banana | cytosol | 32.47 | 37.13 |
| AT5G14620.1 | Thale cress | nucleus | 39.52 | 36.74 |
| GSMUA_Achr11P... | Banana | nucleus | 29.04 | 36.66 |
| CDY40933 | Canola | cytosol | 40.03 | 36.64 |
| GSMUA_Achr3P23940_001 | Banana | nucleus | 36.94 | 35.77 |
| Bra023479.1-P | Field mustard | cytosol | 19.07 | 33.33 |
| Bra004388.1-P | Field mustard | cytosol | 39.18 | 28.01 |
| CDX95928 | Canola | golgi | 39.69 | 24.57 |
| TraesCS7D01G003200.1 | Wheat | nucleus | 25.09 | 23.47 |
| TraesCS5D01G062400.2 | Wheat | cytosol | 25.09 | 22.57 |
Protein Annotations
| Gene3D:1.10.8.10 | MapMan:12.5.1.11 | Gene3D:3.40.50.150 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006306 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| InterPro:IPR015940 | InterPro:IPR030380 | PFscan:PS50030 | PFscan:PS51680 | PANTHER:PTHR23068 | PANTHER:PTHR23068:SF3 |
| InterPro:SAM-dependent_MTases | InterPro:SAM_MeTfrase_DRM | SUPFAM:SSF46934 | SUPFAM:SSF53335 | EnsemblPlantsGene:TraesCS6D01G147500 | EnsemblPlants:TraesCS6D01G147500.2 |
| InterPro:UBA | InterPro:UBA-like_sf | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr6D:+:120646943..120652427
Molecular Weight (calculated)
64516.4 Da
IEP (calculated)
4.479
GRAVY (calculated)
-0.498
Length
582 amino acids
Sequence
(BLAST)
(BLAST)
001: MADRDSDSDD NVKFDWESDG EAEPSSAPAF RNSDAPGPST LDSNGQANEE APSTALIEEY VAMGFPKEIV VKGMKEIGHS DADALLELIL TYQALGADDA
101: VGNCSTSGCA PQGVEEEEDD DDLDFENWDG DDDDVGGRGT NCDDPGDEDF LQEMSQKDKK INSLVDMGFP EDEANIAITR CGVDADLCVL VDSISASLVA
201: GDFNSRNISD HQVMDRCFDS FGGRKKARLM EESKKRRMQY AQGSGSSFAG SHDEPTRIPD PMVGFNLPSD RKPSMTRMLP EQAVGPPFFY FQNVARAPRG
301: AWTTISKKFY DIQPEFVDSK YFCAASRESG YIHNLPIENR EALLPFPLKT VFDAFPHYKK WWPSWDPRRQ LNCLQASVAT AKLTDQIQRT LARSGNPSVQ
401: KHVVDECKTW DLVWVGKNKV AQLEPDEMES LLGFPRDHTR GVVKTERYKS LANSFQVDTV AYHLSVLRDM FPNGVNVLSL STGIGGGEVA LHRLGIRMRT
501: VVSVEEGETN RRIFEGWWDQ TQTGKLVQIA NLKSLTNERI ASLVGRFGCF DLVIGGSQGE QSALLYDYPR ILDAIKSAMA RM
101: VGNCSTSGCA PQGVEEEEDD DDLDFENWDG DDDDVGGRGT NCDDPGDEDF LQEMSQKDKK INSLVDMGFP EDEANIAITR CGVDADLCVL VDSISASLVA
201: GDFNSRNISD HQVMDRCFDS FGGRKKARLM EESKKRRMQY AQGSGSSFAG SHDEPTRIPD PMVGFNLPSD RKPSMTRMLP EQAVGPPFFY FQNVARAPRG
301: AWTTISKKFY DIQPEFVDSK YFCAASRESG YIHNLPIENR EALLPFPLKT VFDAFPHYKK WWPSWDPRRQ LNCLQASVAT AKLTDQIQRT LARSGNPSVQ
401: KHVVDECKTW DLVWVGKNKV AQLEPDEMES LLGFPRDHTR GVVKTERYKS LANSFQVDTV AYHLSVLRDM FPNGVNVLSL STGIGGGEVA LHRLGIRMRT
501: VVSVEEGETN RRIFEGWWDQ TQTGKLVQIA NLKSLTNERI ASLVGRFGCF DLVIGGSQGE QSALLYDYPR ILDAIKSAMA RM
001: MADMRRRNGS GGSSNHERNE QILFPKPETL DFDLPCDTSF PQQIGDNAAS SSGSNVKSLL IEMGFCPTLV QKAIDENGQD DFELLLEILT KSTETEPPGP
101: SFHGLMEPKP EPDIEYETDR IRIALLTMKF PENLVDFALD RLGKDTPIDE MVDFIVAAQL AEKYAEESED SLDGAEINEE DEDVTPVTAR GPEVPNEQLF
201: ETMDKTLRLL EMGFSNDEIS MAIEKIGTKG QISVLAESIV TGEFPAECHD DLEDIEKKVS AAAPAVNRTC LSKSWRFVGV GAQKEDGGGG SSSGTANIKP
301: DPGIESFPFP ATDNVGETSR GKRPKDEDEN AYPEEYTGYD DRGKRLRPED MGDSSSFMET PWMQDEWKDN TYEFPSVMQP RLSQSLGPKV ARRPYFFYGQ
401: LGELSPSWWS KISGFLFGIH PEHVDTRLCS ALRRTEGYLH NLPTVNRFNT LPNPRLTIQD AMPHMRSWWP QWDIRKHFNS GTCSNMKDAT LLCERIGRRI
501: AECKGKPTQQ DQTLILRHCH TSNLIWIAPN ILSPLEPEHL ECIMGYPMNH TNIGGGRLAE RLKLFDYCFQ TDTLGYHLSV LKSMFPQGLT VLSLFSGIGG
601: AEIALDRLGI HLKGVVSVES CGLSRNILKR WWQTSGQTGE LVQIEEIKSL TAKRLETLMQ RFGGFDFVIC QNPSTPLDLS KEISNSEACE FDYTLFNEFA
701: RVTKRVRDMM
101: SFHGLMEPKP EPDIEYETDR IRIALLTMKF PENLVDFALD RLGKDTPIDE MVDFIVAAQL AEKYAEESED SLDGAEINEE DEDVTPVTAR GPEVPNEQLF
201: ETMDKTLRLL EMGFSNDEIS MAIEKIGTKG QISVLAESIV TGEFPAECHD DLEDIEKKVS AAAPAVNRTC LSKSWRFVGV GAQKEDGGGG SSSGTANIKP
301: DPGIESFPFP ATDNVGETSR GKRPKDEDEN AYPEEYTGYD DRGKRLRPED MGDSSSFMET PWMQDEWKDN TYEFPSVMQP RLSQSLGPKV ARRPYFFYGQ
401: LGELSPSWWS KISGFLFGIH PEHVDTRLCS ALRRTEGYLH NLPTVNRFNT LPNPRLTIQD AMPHMRSWWP QWDIRKHFNS GTCSNMKDAT LLCERIGRRI
501: AECKGKPTQQ DQTLILRHCH TSNLIWIAPN ILSPLEPEHL ECIMGYPMNH TNIGGGRLAE RLKLFDYCFQ TDTLGYHLSV LKSMFPQGLT VLSLFSGIGG
601: AEIALDRLGI HLKGVVSVES CGLSRNILKR WWQTSGQTGE LVQIEEIKSL TAKRLETLMQ RFGGFDFVIC QNPSTPLDLS KEISNSEACE FDYTLFNEFA
701: RVTKRVRDMM
Arabidopsis Description
DRM3Probable inactive DNA (cytosine-5)-methyltransferase DRM3 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1E8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.