Factsheet for TraesCS3D01G179800.3

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, cytosol, plasma membrane, golgi

Predictor Summary:

cytosol 2
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, secretory
Any Predictor:	cytosol, nucleus, secretory
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G204200.3	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	99.56	99.56
TraesCS3A01G173300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	99.56	99.56
HORVU3Hr1G035170.2	Barley	cytosol	97.8	98.32
Os01t0254100-01	Rice	nucleus	88.29	88.84
Zm00001d040279_P012	Maize	cytosol	87.15	88.0
KXG32191	Sorghum	cytosol	87.15	88.0
KRH33863	Soybean	cytosol	19.1	78.91
GSMUA_Achr11P...	Banana	cytosol	75.09	75.15
GSMUA_Achr2P00320_001	Banana	cytosol	78.17	74.43
Solyc01g100050.2.1	Tomato	nucleus	73.94	74.2
PGSC0003DMT400063603	Potato	cytosol	73.77	74.03
KRG92932	Soybean	nucleus	73.24	73.63
KRG96753	Soybean	endoplasmic reticulum	72.1	72.48
KRH68470	Soybean	nucleus	71.92	72.3
CDY67912	Canola	cytosol	37.41	71.55
KRH33861	Soybean	cytosol	52.9	71.38
AT3G16830.1	Thale cress	cytosol	70.77	71.09
Bra020567.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	66.37	70.73
Bra022181.1-P	Field mustard	cytosol	69.54	69.79
CDX92100	Canola	cytosol	69.45	69.7
Bra009930.1-P	Field mustard	cytosol	66.11	69.6
CDY05552	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	68.05	69.58
CDX80607	Canola	cytosol	68.4	69.56
CDX95900	Canola	cytosol	69.54	69.54
CDY25010	Canola	cytosol	68.05	69.51
CDX88252	Canola	cytosol	67.61	69.25
AT5G27030.2	Thale cress	cytosol, endoplasmic reticulum	68.05	68.17
CDY50500	Canola	cytosol	29.14	65.54
Bra021203.1-P	Field mustard	cytosol	69.98	63.35
TraesCS7D01G293500.1	Wheat	golgi	63.12	63.01
CDY50502	Canola	cytosol, plastid	69.98	62.5
TraesCS4D01G221200.1	Wheat	cytosol	61.88	61.99
Zm00001d008338_P001	Maize	cytosol	66.9	54.64
KRH30800	Soybean	mitochondrion	15.4	53.68
VIT_04s0008g06360.t01	Wine grape	cytosol	3.26	48.05
VIT_04s0008g06370.t01	Wine grape	cytosol	10.3	32.87

Protein Annotations

MapMan:11.2.2.2	MapMan:15.5.53.1	Gene3D:2.130.10.10	InterPro:CTLH_C	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR001680	InterPro:IPR006594	InterPro:IPR006595	InterPro:IPR015943	InterPro:IPR017986
InterPro:LisH	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PFscan:PS50896
PFscan:PS50897	PANTHER:PTHR44083	PANTHER:PTHR44083:SF3	InterPro:Quinoprotein_ADH-like_supfam	SMART:SM00320	SMART:SM00667
SMART:SM00668	SUPFAM:SSF50978	SUPFAM:SSF50998	InterPro:Topless_fam	EnsemblPlantsGene:TraesCS3D01G179800	EnsemblPlants:TraesCS3D01G179800.3
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

No Description!

Coordinates

chr3D:-:161707587..161717075

Molecular Weight (calculated)

125631.0 Da

IEP (calculated)

7.260

GRAVY (calculated)

-0.330

Length

1136 amino acids

Sequence
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFYFNVKY FEEKVHAGEW DEVERYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDRHDR AKAVDILVKD
0101: LKVFSTFNEE LYKEITQLLT LENFSLLFSC RENEQLSKYG DTKSARSIML IELKKLIEAN PLFREKLVFP TLKASRLRTL INQSLNWQHQ LCKNPRPNPD
0201: IKTLFTDHTC SPPNGARTSP VSVPLAAVPK AGAAYQPLTG HAPFQPPPPA GPSLAGWMTS AAVSSSIQSA AVAASSMSVP PNQGMMKRPA ISDYQSAESE
0301: QLMKRLRPAG HGIDEATYPA PTPQPSWSLD DLPRTVACTL SQGSNVTSMD FHPSRHTLLL VGSANGEFTL WEIGLRERLV SKPFKIWDMQ ACSAQFQSVL
0401: AKDSSMPINR VTWSPDGDLI GVAFAKHLIH LYAYQQPNEA RQVLEIEAHS GGVNDIAFSR PNKQLCVVTC GDDKLIRVWD MHGQKIYSFE GHEAPVYSIC
0501: PHHKETIQFI FSTSIDGKIK AWLYDNAGSR VDYDAPGKWC TTMLYSADGT RLFSCGTSKE GDSHLVEWNE SEGSIKRTYS GFRKKASGVV QGVVQFDTAQ
0601: NHILAAGEDN QIKFWDVDNT NMLTFIDADG GLPGLPRLRF NKEGNLLAVT TVDNGFKILA NSDGLRSLRA FGNRPFEAFR SPYEASAMKV SGAPVVAGIS
0701: PNIGRMDNLD RNSPAKPSPI LNGADPASRS IDIKPRISEE KPDKAKPWEL MEVLNPQQFR VATLPETPDQ TSKVVRLLYT NSGVGLLALG SNAIQRLWKW
0801: NRNEQNPSGK ATASVVPQHW QPNSGLVMAN DIGETPPEES VPCIALSKND SYVMSACGGK VSLFNMMTFK VMTTFMPPPP ASTFLAFHPQ DNNIIAIGME
0901: DSTIHIYNVR VDEVKIRLKG HQKRITGLAF SNSLHILVSS GADAQLCVWA TDSWEKKKSV AIQMPAGKTP SGDTRVQFNS DQNRLLVVHE TQIAIYDASK
1001: MERIYQWIPQ GTLSAAISHA SYSCNSQLVF AAFTDGNVAI FDADNLRLRC RIASSAYMST TAINSNPPVY PFVVAAHPQE PNQFAVGLSD GSVKVMEPLE
1101: SDGKWGTPAP VENGVANGRA PASSATSNLA TDQNQR

Best Arabidopsis Sequence Match ( AT3G16830.1 )
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKESVHKLEQ ESGFFFNIKY FEEKALAGEW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDRNDR AKAVEILAKD
0101: LKVFATFNEE LYKEITQLLT LENFRENEQL SKYGDTKSAR SIMYTELKKL IEANPLFREK LAFPSFKASR LRTLINQSLN WQHQLCKNPR PNPDIKTLFL
0201: DHSCSPSNGA RALTPVNLPV AAVARPSNFV PLGVHGGPFQ SNPAPAPNAN ALAGWMANPN PSSSVPSGVV AASPFPMQPS QVNELKHPRA PSNSLGLMDY
0301: QSADHEQLMK RLRSAQTSNE VTYPAHSHPP ASLDDLPRNV VSTIRQGSVV ISMDFHPSHH TLLAVGCSSG EVTLWEVGSR EKVVTEPFKI WNMAACSVIF
0401: QGSIVKEPSI SVTRVAWSPD GNLLGVSFTK HLIHVYAYQG SDLRQHLEID AHVGCVNDLA FAHPNKQMCV VTCGDDKLIK VWDLSGKKLF TFEGHEAPVY
0501: SICPHQKENI QFIFSTALDG KIKAWLYDNV GSRVDYDAPG QWCTTMLYSA DGSRLFSCGT SKEGDSFLVE WNESEGALKR TYLGFRKKSA GVVQFDTTRN
0601: RFLAVGEDNQ IKFWNMDNTN LLTVVEAEGG LPNLPRLRFN KDGNLLAVTT ADNGFKILAN TDGLRTLRAF EARSFEASKA SIDMKVSTSA MASSISPAIG
0701: KIEHMDAGSP ARPTPIPNGI EAMSRTMEKP RNLDSVDKSK PLELTEIVDP TQCRQVTMPD SKDSVSKVAR LLYTNSGVGV LALGSNGVQR LWKWIRNEQN
0801: PTGKATASVT PQHWQPNSGL LMANDVPENP EGSVPCIALS KNDSYVMSAC GGKVSLFNMM TFKVMTTFMP PPPASTFLAF HPQDNNIIAI GMEDSSIHIY
0901: NVRVDEVKTK LKGHQKHITG LAFSTALNIL VSSGADAQLF FWTADSWEKK KSSAIQLPPG KAPVGDTRVQ FHNDQIQLLV SHETQLAIYD ASKMECIHKW
1001: VPQEALSSPI TSASYSCNSQ LVYASFADGN IAVFDAESLR LRCRIAPSAY MPQPTPNSAP IFPQVITAHP QEPNQLAVGL SDGSVKVIEP SELSRRWGVG
1101: VAAGSDKAGT ENGRPSSSSA ANNSSSDQIQ R

Arabidopsis Description

TPR2Topless-related protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRZ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.