Factsheet for Solyc01g100050.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 2
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400063603	Potato	cytosol	99.29	99.29
KRH33863	Soybean	cytosol	22.17	91.27
KRG92932	Soybean	nucleus	84.45	84.6
VIT_14s0060g01680.t01	Wine grape	cytosol	83.66	83.66
KRG96753	Soybean	endoplasmic reticulum	83.13	83.27
KRH68470	Soybean	nucleus	82.69	82.83
KRH33861	Soybean	cytosol	61.04	82.07
Bra020567.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	73.14	77.67
CDY25010	Canola	cytosol	76.06	77.43
CDX80607	Canola	cytosol	76.24	77.26
CDY05552	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	75.8	77.23
CDX88252	Canola	cytosol	74.47	76.01
Bra009930.1-P	Field mustard	cytosol	72.17	75.72
Os01t0254100-01	Rice	nucleus	75.44	75.64
AT5G27030.2	Thale cress	cytosol, endoplasmic reticulum	74.91	74.78
KXG32191	Sorghum	cytosol	74.12	74.58
Zm00001d040279_P012	Maize	cytosol	73.85	74.31
TraesCS3D01G179800.3	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	74.2	73.94
TraesCS3B01G204200.3	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	74.12	73.86
TraesCS3A01G173300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	73.94	73.68
GSMUA_Achr11P...	Banana	cytosol	72.0	71.81
GSMUA_Achr2P00320_001	Banana	cytosol	74.56	70.75
Solyc03g116750.2.1	Tomato	nucleus	63.87	63.87
Solyc08g076030.2.1	Tomato	nucleus	63.52	63.35
Solyc03g117360.2.1	Tomato	nucleus	62.63	62.74
Solyc07g008040.2.1	Tomato	nucleus	60.25	62.17
KRH30800	Soybean	mitochondrion	16.87	58.59
Solyc05g016070.1.1	Tomato	cytosol	6.27	54.2
Solyc03g117370.2.1	Tomato	cytosol	19.35	54.07
Solyc03g117380.2.1	Tomato	cytosol	1.68	51.35
Zm00001d008338_P001	Maize	cytosol	59.19	48.17
Solyc03g117410.2.1	Tomato	cytosol	5.83	46.15
Solyc08g029050.2.1	Tomato	cytosol	42.23	39.15

Protein Annotations

MapMan:11.2.2.2	MapMan:15.5.53.1	Gene3D:2.130.10.10	InterPro:CTLH_C	ncoils:Coil	GO:GO:0000003
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009653	GO:GO:0009790	GO:GO:0009791
GO:GO:0009987	GO:GO:0010072	InterPro:IPR001680	InterPro:IPR006594	InterPro:IPR006595	InterPro:IPR015943
InterPro:IPR017986	UniProt:K4B139	InterPro:LisH	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PFscan:PS50896	PFscan:PS50897	PANTHER:PTHR44083	PANTHER:PTHR44083:SF3	InterPro:Quinoprotein_ADH-like_supfam
SMART:SM00320	SMART:SM00667	SMART:SM00668	SUPFAM:SSF50978	SUPFAM:SSF50998	EnsemblPlantsGene:Solyc01g100050.2
EnsemblPlants:Solyc01g100050.2.1	InterPro:Topless_fam	UniParc:UPI000276913B	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

Topless-related protein 3 [Source:Projected from Arabidopsis thaliana (AT5G27030) UniProtKB/Swiss-Prot;Acc:Q84JM4]

Coordinates

chr1:+:90149468..90160261

Molecular Weight (calculated)

124684.0 Da

IEP (calculated)

7.130

GRAVY (calculated)

-0.234

Length

1132 amino acids

Sequence
(BLAST)

0001: MSSLSRELVF LILQFLEEEK FKESVHKLEQ ESGFFFNMKY FEEKVHAGEW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDKQDK AKAVEILVSD
0101: LKVFSTFNED LYKEITQLLT LTNFRENEQL SKYGDTKTAR SIMLIELKKL IEANPLFREK LVFPTLRSSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFT
0201: DHTCTPPNGA VAPTPVNLPP AAIAKPAAFT ALGAHGPFPP AAAAAANANA LAGWMANAAA SSSVQAAVVT ASSLPVPPNQ VSILKRPLTP PATLGMLDYQ
0301: SADHEQLMKR LRPAQSVEEV TYPTVRQQAS WSLDDLPRTV AFTLPQGSSV TSMDFHPSHH TYLLVGSTNG EITLWEVATR EKLVAKAFKI WDVQACTLTF
0401: QASASKDAPF SVSRVAWSPD GTFVGVAFSK HLVHLYATVG TNDLRQHLEM DAHAGSVNDL AFAYPNKQLC IVTCGDDKLI KVWDITGRKL FNFEGHEAPV
0501: YSICPHQKES IQFIFSTAID GKIKAWLYDN MGSRVDYDAP GHWCTTMLYS ADGTRLFSCG TGKEGDSFLV EWNESEGAIK RTYSGFRKKS AGVVQFDTTQ
0601: NHFLAVGEDS QIKFWDMDNI NILTTIDADG GLPSLPRLRF NKEGNLLAVT TADNGIKILG NPAGMRSLRT VEAPPFEALR SPIEAAAIKQ GSGSSVPNAT
0701: PVNCKVERSS PIRPSPILNG VDSVPRSMEK PRILEEVSDK AKPWQLTEIL DQAQCRLVTM PESSDSNNKV ARLLYTNSGV GILALGSNGT QKLWKWTRNE
0801: QNPSGKATAN VVPQYWQPNS GLLMTNDIVG INLEEAVPCI ALSKNDSYVM SAAGGKVSLF NMMTFKVMTT FMPPPPASTF LAFHPQDNNI IAIGMEDSTI
0901: HIYNVRVDEV KSKLKGHQKR ITGLAFSTNL NILVSSGADA QLCLWSIDSW DKRKSVPIQL PAGKAPSGDT RVQFHADQVR LLVSHETQLA IYDASKMERI
1001: RQWVPQDALS APITYAAYSC NSQLVYASFS DGNIGVFDAD TLRLRCRVAP SAYLSQAVLT GSQSVYPLVV AAHPQEPSQF AVGLTDGTVK VIEPLESEGK
1101: WGVSPPVDNG MLNGRVASSS TANNHAADQV QR

Best Arabidopsis Sequence Match ( AT5G27030.1 )
(BLAST)

0001: MSSLSRELVF LILQFLEEEK FKESVHRLEK ESGFFFNTKY FDEKVLAGEW DDVETYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDRQEK AKAVEILVQD
0101: LRVFSTFNEE LYKEITQLLT LQNFRENEQL SKYGDTKTAR GIMLGELKKL IEANPLFRDK LMFPTLRSSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFT
0201: DHTCTLPNGP LAPSAVNQPV TTLTKPAAYP SLGPHVPFPP GPAAANAGAL ASWMAAASGA SAVQAAVVTP ALMPQPQNQM SILKRPRTPP ATPGIVDYQN
0301: PDHELMKRLR PAPSVEEVTY PAPRQQAPWS LEDLPTKAAL ALHQGSTVTS MEFYPMQNTL LLVGSATGEI TLWELAARER LVSRPFKIWD MSNCSHQFQA
0401: LIAKETPISV TRVAWSPDGN FIGVAFTKHL IQLYAFSGPN DLRQHTEIDA HVGAVNDLAF ANPNRQLCVI TCGDDKLIKV WDVSGRKHFT FEGHDAPVYS
0501: ICPHYKENIQ FIFSTAIDGK IKAWLYDNLG SRVDYDAPGK WCTRMLYSAD GTRLFSCGTS KDGDSFLVEW NESEGSIKRT YKEFQKKLAG VVQFDTSKNH
0601: FLAVGEDGQI KFWDMNNINV LTSTDAEGGL PALPHLRFNK DGNLLAVTTA DNGFKILANP AGFRSLRAME TPASETMRTP VDFKAVPGAP VASVNCKVER
0701: GSPVRHSQML NGVDPSKSRI DDSTDKPKSW QLAEILDPSQ CFQATLPDTA GSSTKVVQLL YTNSGAGILA LGSNGIQRLW KWVPNEQNPS GKATATVVPQ
0801: HWQPNSGLLM TNDVSGVNLE NAAPCIALSK NDSYVMSAAG GKVSLFNMMT FKVMTTFMPP PPASTFLAFH PQDNNVIAIG MEDSTIHIYN VRVDEVKSKL
0901: KGHQKRITGL AFSTALNILV SSGADAQICF WSIDTWEKRK SVAIQMPAGK AANGDTRVQF HVDQLRILVV HETQLAVFDA SKMECIRQWI PQDSLSAPIS
1001: SAVYACNSQL IYTTFRDGNI GVFDADSLRL RCRISPSAYL PQGNQGLSPL VVAAHPQDPN QFAVGLNDGS VKMMEPTEGE GKWGMIPPSE AINSPSTTSN
1101: QTPEQLQR

Arabidopsis Description

TPR3TOPLESS-related 3 [Source:UniProtKB/TrEMBL;Acc:F4K2T3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.