Factsheet for Bra020567.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, cytosol, plasma membrane, golgi

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, secretory
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05552	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	98.22	94.24
CDY25010	Canola	cytosol	98.12	94.06
Bra009930.1-P	Field mustard	cytosol	89.87	88.79
AT5G27030.2	Thale cress	cytosol, endoplasmic reticulum	89.96	84.57
VIT_14s0060g01680.t01	Wine grape	cytosol	78.52	73.94
KRH33863	Soybean	cytosol	19.04	73.82
KRH33861	Soybean	cytosol	57.79	73.16
Solyc01g100050.2.1	Tomato	nucleus	77.67	73.14
PGSC0003DMT400063603	Potato	cytosol	77.39	72.88
KRG96753	Soybean	endoplasmic reticulum	77.11	72.74
KRG92932	Soybean	nucleus	77.02	72.65
KRH68470	Soybean	nucleus	76.74	72.39
Os01t0254100-01	Rice	nucleus	71.39	67.4
KXG32191	Sorghum	cytosol	70.64	66.93
Zm00001d040279_P012	Maize	cytosol	70.26	66.58
TraesCS3D01G179800.3	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	70.73	66.37
Bra022181.1-P	Field mustard	cytosol	70.36	66.25
TraesCS3B01G204200.3	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	70.54	66.2
TraesCS3A01G173300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	70.45	66.11
GSMUA_Achr11P...	Banana	cytosol	68.48	64.32
GSMUA_Achr2P00320_001	Banana	cytosol	70.64	63.12
Bra003569.1-P	Field mustard	cytosol	62.57	61.25
Bra026112.1-P	Field mustard	cytosol	62.85	59.82
Bra021203.1-P	Field mustard	cytosol	70.36	59.76
Bra026751.1-P	Field mustard	cytosol	62.95	59.38
Bra021142.1-P	Field mustard	cytosol	61.73	58.08
Bra001613.1-P	Field mustard	cytosol	60.6	57.52
KRH30800	Soybean	mitochondrion	17.35	56.75
Bra028653.1-P	Field mustard	mitochondrion	58.72	51.19
Bra006005.1-P	Field mustard	cytosol	51.5	51.12
Bra006006.1-P	Field mustard	cytosol	42.12	45.86
Zm00001d008338_P001	Maize	cytosol	57.88	44.36
Bra000550.1-P	Field mustard	cytosol	16.23	28.13

Protein Annotations

MapMan:11.2.2.2	MapMan:15.5.53.1	Gene3D:2.130.10.10	EnsemblPlantsGene:Bra020567	EnsemblPlants:Bra020567.1	EnsemblPlants:Bra020567.1-P
InterPro:CTLH_C	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001680	InterPro:IPR006594
InterPro:IPR006595	InterPro:IPR015943	InterPro:IPR017986	InterPro:LisH	UniProt:M4DVM3	PFAM:PF00400
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PFscan:PS50896	PFscan:PS50897	PANTHER:PTHR44083
PANTHER:PTHR44083:SF3	SMART:SM00320	SMART:SM00667	SMART:SM00668	SUPFAM:SSF50978	InterPro:Topless_fam
UniParc:UPI0002546AB5	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
SEG:seg	:	:	:	:	:

Description

AT5G27030 (E=0.0) TPR3 | TPR3 (TOPLESS-RELATED 3)

Coordinates

chrA02:+:24519522..24526128

Molecular Weight (calculated)

118649.0 Da

IEP (calculated)

7.325

GRAVY (calculated)

-0.304

Length

1066 amino acids

Sequence
(BLAST)

0001: MSSLSRELVF LILQFLEEEK FNESVHRLEK ESGFFFNTKY FDEKVLAGEW NEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDRQDK AKAVEILVQD
0101: LRVFSTFNED LYKEITQLLT LQNFRENDQL SKYGDTKTAR TVMLSEVKKL IEANPLFRDK LTFPALRSSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFT
0201: DHTCAVPNGP LAPSSVNQPV TTLTKPTAFP PLGAHGRPRT PPATPGIVDY QNPDHELMKR LRPAPSVEEV TYPAPRQQAL WSPEDLPLKV ALALHQGSTV
0301: TSMEFHPMQN TLLLVGSATG EITLWELAVR EKLVTSPFKV WDMTNCTNQF QALIAKETPI SVTRVAWSPD GNFIGVAYSK HLVHLYAFSG PNDLRQHAEI
0401: DAHMGAVNDL AFAIPNRQLC VVTCGDDKLI KVWDVQGRKH FTFEGHETPV YSICPHHKEN IQFIFSTAID GKIKAWLYDN MGSRVDYDAP GKWCTTMLYS
0501: ADGSRLFSCG TSKDGDFFLV EWNESEGSIK RTYLGFHKKL AGVVQFDTSK NHFLAVGEDG QIKFWDMDNI NVLTSTDAEG GLPALPRVRF NREGNLLAVS
0601: TADNGFKILA NTAGFRSMRA MEASAFETMR NPVDSSLTKA VPGAPVASVN CKIERGSPVR PSPMLNGVDA SKPRIIDDST DKPRPWQLAE IVDPAQCRQA
0701: TLPDTAGSST KVVRLLYTNS GAGILALGLN GIQRLWKWVR NEQNPSGKAT TAVVPQQWQP NSGLLMANDV SGVNLEESNP CIALSKNDSY VMSAAGGKVS
0801: LFNMMTFKVM TTFMQPPPAS TFLAFHPQDN NIIAIGMEDS TIHIYNVRVD EVKSKLKGHQ KRITGLAFST TLNILVSSGA DAQICFWSID TWEKRKSVAI
0901: QMPAGKAAAN GDTRVQFHVD QIRILAVHET QLAIFDASKM ECIRQWIPQD SLSAPISSAV YACNSQLIYT TFRDGNIGVF DADTLRLRCR ISPSAYLPQG
1001: NQGLSPLVVA AHPQEPNQFA VGLNDGSVKV IEPTEAEGKW GMVPPSEAIK SSPSTTNNQT QEQLQR

Best Arabidopsis Sequence Match ( AT5G27030.1 )
(BLAST)

0001: MSSLSRELVF LILQFLEEEK FKESVHRLEK ESGFFFNTKY FDEKVLAGEW DDVETYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDRQEK AKAVEILVQD
0101: LRVFSTFNEE LYKEITQLLT LQNFRENEQL SKYGDTKTAR GIMLGELKKL IEANPLFRDK LMFPTLRSSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFT
0201: DHTCTLPNGP LAPSAVNQPV TTLTKPAAYP SLGPHVPFPP GPAAANAGAL ASWMAAASGA SAVQAAVVTP ALMPQPQNQM SILKRPRTPP ATPGIVDYQN
0301: PDHELMKRLR PAPSVEEVTY PAPRQQAPWS LEDLPTKAAL ALHQGSTVTS MEFYPMQNTL LLVGSATGEI TLWELAARER LVSRPFKIWD MSNCSHQFQA
0401: LIAKETPISV TRVAWSPDGN FIGVAFTKHL IQLYAFSGPN DLRQHTEIDA HVGAVNDLAF ANPNRQLCVI TCGDDKLIKV WDVSGRKHFT FEGHDAPVYS
0501: ICPHYKENIQ FIFSTAIDGK IKAWLYDNLG SRVDYDAPGK WCTRMLYSAD GTRLFSCGTS KDGDSFLVEW NESEGSIKRT YKEFQKKLAG VVQFDTSKNH
0601: FLAVGEDGQI KFWDMNNINV LTSTDAEGGL PALPHLRFNK DGNLLAVTTA DNGFKILANP AGFRSLRAME TPASETMRTP VDFKAVPGAP VASVNCKVER
0701: GSPVRHSQML NGVDPSKSRI DDSTDKPKSW QLAEILDPSQ CFQATLPDTA GSSTKVVQLL YTNSGAGILA LGSNGIQRLW KWVPNEQNPS GKATATVVPQ
0801: HWQPNSGLLM TNDVSGVNLE NAAPCIALSK NDSYVMSAAG GKVSLFNMMT FKVMTTFMPP PPASTFLAFH PQDNNVIAIG MEDSTIHIYN VRVDEVKSKL
0901: KGHQKRITGL AFSTALNILV SSGADAQICF WSIDTWEKRK SVAIQMPAGK AANGDTRVQF HVDQLRILVV HETQLAVFDA SKMECIRQWI PQDSLSAPIS
1001: SAVYACNSQL IYTTFRDGNI GVFDADSLRL RCRISPSAYL PQGNQGLSPL VVAAHPQDPN QFAVGLNDGS VKMMEPTEGE GKWGMIPPSE AINSPSTTSN
1101: QTPEQLQR

Arabidopsis Description

TPR3TOPLESS-related 3 [Source:UniProtKB/TrEMBL;Acc:F4K2T3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.