Factsheet for TraesCS3A01G173300.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, cytosol, plasma membrane, golgi

Predictor Summary:

cytosol 2
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, secretory
Any Predictor:	cytosol, nucleus, secretory
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G179800.3	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	99.56	99.56
TraesCS3B01G204200.3	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	99.38	99.38
HORVU3Hr1G035170.2	Barley	cytosol	97.71	98.23
Os01t0254100-01	Rice	nucleus	88.2	88.75
Zm00001d040279_P012	Maize	cytosol	87.15	88.0
KXG32191	Sorghum	cytosol	87.15	88.0
KRH33863	Soybean	cytosol	19.1	78.91
GSMUA_Achr11P...	Banana	cytosol	75.0	75.07
GSMUA_Achr2P00320_001	Banana	cytosol	77.99	74.27
Solyc01g100050.2.1	Tomato	nucleus	73.68	73.94
PGSC0003DMT400063603	Potato	cytosol	73.5	73.76
KRG92932	Soybean	nucleus	73.06	73.45
KRG96753	Soybean	endoplasmic reticulum	71.83	72.21
KRH68470	Soybean	nucleus	71.57	71.95
CDY67912	Canola	cytosol	37.32	71.38
KRH33861	Soybean	cytosol	52.82	71.26
AT3G16830.1	Thale cress	cytosol	70.51	70.82
Bra020567.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	66.11	70.45
Bra022181.1-P	Field mustard	cytosol	69.28	69.52
CDX92100	Canola	cytosol	69.19	69.43
Bra009930.1-P	Field mustard	cytosol	65.85	69.32
CDY05552	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	67.78	69.31
CDX80607	Canola	cytosol	68.13	69.29
CDX95900	Canola	cytosol	69.28	69.28
CDY25010	Canola	cytosol	67.78	69.24
CDX88252	Canola	cytosol	67.34	68.98
AT5G27030.2	Thale cress	cytosol, endoplasmic reticulum	67.78	67.9
CDY50500	Canola	cytosol	29.05	65.35
Bra021203.1-P	Field mustard	cytosol	69.72	63.11
TraesCS7A01G296100.6	Wheat	cytosol	63.03	62.92
CDY50502	Canola	cytosol, plastid	69.72	62.26
TraesCS4A01G083300.2	Wheat	cytosol	61.97	62.03
Zm00001d008338_P001	Maize	cytosol	66.81	54.57
KRH30800	Soybean	mitochondrion	15.32	53.37
VIT_04s0008g06360.t01	Wine grape	cytosol	3.26	48.05
VIT_04s0008g06370.t01	Wine grape	cytosol	10.3	32.87

Protein Annotations

MapMan:11.2.2.2	MapMan:15.5.53.1	Gene3D:2.130.10.10	InterPro:CTLH_C	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR001680	InterPro:IPR006594	InterPro:IPR006595	InterPro:IPR015943
InterPro:IPR017986	InterPro:LisH	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PFscan:PS50896	PFscan:PS50897	PANTHER:PTHR44083	PANTHER:PTHR44083:SF3	SMART:SM00320	SMART:SM00667
SMART:SM00668	SUPFAM:SSF50978	InterPro:Topless_fam	EnsemblPlantsGene:TraesCS3A01G173300	EnsemblPlants:TraesCS3A01G173300.1	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:

Description

No Description!

Coordinates

chr3A:-:191527978..191538980

Molecular Weight (calculated)

125649.0 Da

IEP (calculated)

7.260

GRAVY (calculated)

-0.327

Length

1136 amino acids

Sequence
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFYFNVKY FEEKVHAGEW DEVERYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDRHDR AKAVDILVKD
0101: LKVFSTFNEE LYKEITQLLT LENFSLLFSC RENEQLSKYG DTKSARSIML IELKKLIEAN PLFREKLVFP TLKASRLRTL INQSLNWQHQ LCKNPRPNPD
0201: IKTLFTDHTC SPPNGARTSP VSVPLAAVPK AGAAYQPLTG HAPFQPPPPA GPSLAGWMTS AAVSSSIQSA AVAASSMSVP PNQGMMKRPA ISDYQSAESE
0301: QLMKRLRPTG HGIDEATYPA PTPQPSWSLD DLPRTVACTL SQGSNVTSMD FHPSRHTLLL VGSANGEFTL WEIGLRERLV SKPFKIWDMQ ACSAQFQSVL
0401: AKDSSMPINR VTWSPDGDLI GVAFAKHLIH LYAYQQPNEA RQVLEIEAHS GGVNDIAFSR PNKQLCVVTC GDDKLIRVWD MHGQKIYSFE GHEAPVYSIC
0501: PHHKETIQFI FSTSIDGKIK AWLYDNAGSR VDYDAPGKWC TTMLYSADGT RLFSCGTSKE GDSHLVEWNE SEGSIKRTYS GFRKKASGVV QGVVQFDTAQ
0601: NHILAAGEDN QIKIWDVDNT NMLTFIDADG GLPGLPRLRF NKEGNLLAVT TVDNGFKILA NSDGLRSLRA FGNRPFEAFR SPYEASAMKV SGAPVVAGIS
0701: PNIGRMDNLD RNSPAKPSPI LNGADPASRS IDIKPRISEE KPDKAKPWEL MEVLNPQQFR VATLPETPDQ TSKVVRLLYT NSGVGLLALG SNAIQRLWKW
0801: NRNEQNPSGK ATASVVPQHW QPNSGLVMAN DIGETPPEES VPCIALSKND SYVMSACGGK VSLFNMMTFK VMTTFMPPPP ASTFLAFHPQ DNNIIAIGME
0901: DSTIHIYNVR VDEVKIRLKG HQKRITGLAF SNSLHILVSS GADAQLCVWA TDSWEKKKLV AIQMPAGKTP SGDTRVQFNS DQNRLLVVHE TQIAIYDASK
1001: MERIYQWIPQ GTLSAAISHA SYSCNSQLVF AAFTDGNVAI FDADNLRLRC RIASSAYMST IAINSNPPVY PFVVAAHPQE PNQFAVGLSD GSVKVMEPLE
1101: SDGKWGTPAP VENGVANGRA PASSATSNPA TDQNQR

Best Arabidopsis Sequence Match ( AT1G15750.1 )
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFFFNMKY FEDEVHNGNW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDKHDR PKAVDILVKD
0101: LKVFSTFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR AIMLVELKKL IEANPLFRDK LQFPTLRNSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCGPPNGA RAPSPVNNPL LGGIPKAGGF PPLGAHGPFQ PTASPVPTPL AGWMSSPSSV PHPAVSAGAI ALGGPSIPAA LKHPRTPPTN ASLDYPSADS
0301: EHVSKRTRPM GISDEVNLGV NMLPMSFSGQ AHGHSPAFKA PDDLPKTVAR TLSQGSSPMS MDFHPIKQTL LLVGTNVGDI GLWEVGSRER LVQKTFKVWD
0401: LSKCSMPLQA ALVKEPVVSV NRVIWSPDGS LFGVAYSRHI VQLYSYHGGE DMRQHLEIDA HVGGVNDISF STPNKQLCVI TCGDDKTIKV WDAATGVKRH
0501: TFEGHEAPVY SVCPHYKENI QFIFSTALDG KIKAWLYDNM GSRVDYDAPG RWCTTMAYSA DGTRLFSCGT SKDGESFIVE WNESEGAVKR TYQGFHKRSL
0601: GVVQFDTTKN RYLAAGDDFS IKFWDMDAVQ LLTAIDGDGG LQASPRIRFN KEGSLLAVSG NENVIKIMAN SDGLRLLHTF ENISSESSKP AINSIAAAAA
0701: AAATSAGHAD RSANVVSIQG MNGDSRNMVD VKPVITEESN DKSKIWKLTE VSEPSQCRSL RLPENLRVAK ISRLIFTNSG NAILALASNA IHLLWKWQRN
0801: ERNATGKATA SLPPQQWQPA SGILMTNDVA ETNPEEAVPC FALSKNDSYV MSASGGKISL FNMMTFKTMA TFMPPPPAAT FLAFHPQDNN IIAIGMDDST
0901: IQIYNVRVDE VKSKLKGHSK RITGLAFSNV LNVLVSSGAD AQLCVWNTDG WEKQRSKVLP LPQGRPNSAP SDTRVQFHQD QAHFLVVHET QLAIYETTKL
1001: ECMKQWAVRE SLAPITHATF SCDSQLVYAS FMDATVCVFS SANLRLRCRV NPSAYLPASL SNSNVHPLVI AAHPQEPNMF AVGLSDGGVH IFEPLESEGK
1101: WGVAPPAENG SASGAPTAPS VGASASDQPQ R

Arabidopsis Description

TPLProtein TOPLESS [Source:UniProtKB/Swiss-Prot;Acc:Q94AI7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.