Factsheet for Bra009930.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88252	Canola	cytosol	98.7	96.03
Bra020567.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	88.79	89.87
AT5G27030.2	Thale cress	cytosol, endoplasmic reticulum	87.95	83.69
KRH33863	Soybean	cytosol	19.46	76.36
KRG92932	Soybean	nucleus	76.92	73.45
VIT_14s0060g01680.t01	Wine grape	cytosol	76.83	73.23
KRG96753	Soybean	endoplasmic reticulum	76.27	72.83
KRH33861	Soybean	cytosol	56.72	72.68
KRH68470	Soybean	nucleus	76.09	72.65
Solyc01g100050.2.1	Tomato	nucleus	75.72	72.17
PGSC0003DMT400063603	Potato	cytosol	75.44	71.91
Os01t0254100-01	Rice	nucleus	70.25	67.14
KXG32191	Sorghum	cytosol	69.69	66.84
Zm00001d040279_P012	Maize	cytosol	69.51	66.67
TraesCS3D01G179800.3	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	69.6	66.11
TraesCS3B01G204200.3	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	69.42	65.93
TraesCS3A01G173300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	69.32	65.85
Bra022181.1-P	Field mustard	cytosol	68.67	65.46
GSMUA_Achr11P...	Banana	cytosol	66.73	63.44
GSMUA_Achr2P00320_001	Banana	cytosol	69.23	62.62
Bra003569.1-P	Field mustard	cytosol	60.89	60.33
Bra021203.1-P	Field mustard	cytosol	69.05	59.36
Bra026112.1-P	Field mustard	cytosol	61.45	59.2
Bra026751.1-P	Field mustard	cytosol	61.54	58.76
Bra021142.1-P	Field mustard	cytosol	60.7	57.81
Bra001613.1-P	Field mustard	cytosol	59.96	57.61
KRH30800	Soybean	mitochondrion	17.24	57.06
Bra028653.1-P	Field mustard	mitochondrion	58.02	51.19
Bra006005.1-P	Field mustard	cytosol	50.32	50.56
Bra006006.1-P	Field mustard	cytosol	41.15	45.35
Zm00001d008338_P001	Maize	cytosol	57.55	44.64
Bra000550.1-P	Field mustard	cytosol	16.03	28.13

Protein Annotations

MapMan:11.2.2.2	MapMan:15.5.53.1	Gene3D:2.130.10.10	EnsemblPlantsGene:Bra009930	EnsemblPlants:Bra009930.1	EnsemblPlants:Bra009930.1-P
InterPro:CTLH_C	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001680	InterPro:IPR006594
InterPro:IPR006595	InterPro:IPR015943	InterPro:IPR017986	InterPro:LisH	UniProt:M4D0D2	PFAM:PF00400
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PFscan:PS50896	PFscan:PS50897	PANTHER:PTHR44083
PANTHER:PTHR44083:SF3	InterPro:Quino_amine_DH_bsu	InterPro:Quinoprotein_ADH-like_supfam	SMART:SM00320	SMART:SM00667	SMART:SM00668
SUPFAM:SSF50969	SUPFAM:SSF50998	InterPro:Topless_fam	UniParc:UPI000253F43C	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	SEG:seg	:	:	:

Description

AT5G27030 (E=0.0) TPR3 | TPR3 (TOPLESS-RELATED 3)

Coordinates

chrA06:-:18142198..18148289

Molecular Weight (calculated)

119703.0 Da

IEP (calculated)

7.162

GRAVY (calculated)

-0.234

Length

1079 amino acids

Sequence
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKESVHRLEK ESGFFFNTKY FDEKVLAGEW DEVEKYLSGF TKLDDNRYSM KIFFEIRKQK YLEALDKQDK AKAVEILVQD
0101: LRVFSTFNEE LYKEITQLLT LHNFRENEQL SKYGDTKTAR TIMLGELKKL IEANPLFRDK LTFPTLRSSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFT
0201: DHTCAVPNGP LAPSQLNQPI TTLTKPTAFP SLGAHAQLPV LFPSNTNYLS SNKVSILKRP PATPGVVDYQ NPEHELMKRL RPAPSVEEVT YPAPRQHAPP
0301: VSLEDLPLKA ALALHQGSTV TSMEFHPMQN TLLLVGSATG EIALWELAAR EKLVSRPFKI WDMANCSPPL QALIAKETPM SVIRVAWSPD GNFIGVAYAK
0401: HLIHLYAFSG PNELRQHAEV DAHVGAVNDL AFANPNRQLC VVTCGDDQLI KVWDVSGRKH FTFEGHEAPV YSICPHHKEN IQFIFSTAID GKIKAWLYDN
0501: MGSRVDYDAP GKWCTTMLYS ADGTRLFSCG TSKDGDVFLV EWNESEGSIK RTYLGFQKKL AGMVQFDTSK NHFLAVGEDA QIKFWDMDNI NVLTSTDAEG
0601: GLPALPRLRF NREGNFLAVT TADNGFKILA NQAGFRSLRA MEASAFERMR TPADSSLTKA AVPGAPVASV SCKVELGSPV RPSPMLNGVD PPKPRVDDLA
0701: DNPRPWQLAE ILDPAQCRQA TLPDTGSSTK VVRLLYTNSG AGILALGFNG IQRLWKWVRN EQNPSGKATA AAVPQHWQPN SGLLMTNDVS GVNLEEANPC
0801: IALSKNDSYV MSAAGGKVSL FNMMTFKVMT TFMPPPPPSS FLAFHPQDNN IIAVGMEDST IHIYNVRVDE VKSKLKGHLK RITGLAFSTT LSILVSSAAD
0901: ALICFWSIDT WEKRKSVVIP MPAGKVAVGD TRVQFHVDQI RILAVHETQL AILDASKMEC IRQWIPQDSL SSHITSAVYA CNSQLIYTTF RDGNIGVFDA
1001: DTLGLRCRIS PSAYLPQVNQ GLSPLVVAAH PQEPNQFAVG LNDGSVKVIE PTEAEGKWGM VPPSEAINTS PSTTSNQTP

Best Arabidopsis Sequence Match ( AT5G27030.1 )
(BLAST)

0001: MSSLSRELVF LILQFLEEEK FKESVHRLEK ESGFFFNTKY FDEKVLAGEW DDVETYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDRQEK AKAVEILVQD
0101: LRVFSTFNEE LYKEITQLLT LQNFRENEQL SKYGDTKTAR GIMLGELKKL IEANPLFRDK LMFPTLRSSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFT
0201: DHTCTLPNGP LAPSAVNQPV TTLTKPAAYP SLGPHVPFPP GPAAANAGAL ASWMAAASGA SAVQAAVVTP ALMPQPQNQM SILKRPRTPP ATPGIVDYQN
0301: PDHELMKRLR PAPSVEEVTY PAPRQQAPWS LEDLPTKAAL ALHQGSTVTS MEFYPMQNTL LLVGSATGEI TLWELAARER LVSRPFKIWD MSNCSHQFQA
0401: LIAKETPISV TRVAWSPDGN FIGVAFTKHL IQLYAFSGPN DLRQHTEIDA HVGAVNDLAF ANPNRQLCVI TCGDDKLIKV WDVSGRKHFT FEGHDAPVYS
0501: ICPHYKENIQ FIFSTAIDGK IKAWLYDNLG SRVDYDAPGK WCTRMLYSAD GTRLFSCGTS KDGDSFLVEW NESEGSIKRT YKEFQKKLAG VVQFDTSKNH
0601: FLAVGEDGQI KFWDMNNINV LTSTDAEGGL PALPHLRFNK DGNLLAVTTA DNGFKILANP AGFRSLRAME TPASETMRTP VDFKAVPGAP VASVNCKVER
0701: GSPVRHSQML NGVDPSKSRI DDSTDKPKSW QLAEILDPSQ CFQATLPDTA GSSTKVVQLL YTNSGAGILA LGSNGIQRLW KWVPNEQNPS GKATATVVPQ
0801: HWQPNSGLLM TNDVSGVNLE NAAPCIALSK NDSYVMSAAG GKVSLFNMMT FKVMTTFMPP PPASTFLAFH PQDNNVIAIG MEDSTIHIYN VRVDEVKSKL
0901: KGHQKRITGL AFSTALNILV SSGADAQICF WSIDTWEKRK SVAIQMPAGK AANGDTRVQF HVDQLRILVV HETQLAVFDA SKMECIRQWI PQDSLSAPIS
1001: SAVYACNSQL IYTTFRDGNI GVFDADSLRL RCRISPSAYL PQGNQGLSPL VVAAHPQDPN QFAVGLNDGS VKMMEPTEGE GKWGMIPPSE AINSPSTTSN
1101: QTPEQLQR

Arabidopsis Description

TPR3TOPLESS-related 3 [Source:UniProtKB/TrEMBL;Acc:F4K2T3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.