Factsheet for PGSC0003DMT400063603

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 2
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g100050.2.1	Tomato	nucleus	99.29	99.29
KRH33863	Soybean	cytosol	22.17	91.27
KRG92932	Soybean	nucleus	84.1	84.25
VIT_14s0060g01680.t01	Wine grape	cytosol	83.3	83.3
KRG96753	Soybean	endoplasmic reticulum	82.77	82.92
KRH68470	Soybean	nucleus	82.42	82.57
KRH33861	Soybean	cytosol	60.69	81.59
Bra020567.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	72.88	77.39
CDY25010	Canola	cytosol	75.8	77.16
CDX80607	Canola	cytosol	75.97	76.99
CDY05552	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	75.53	76.96
CDX88252	Canola	cytosol	74.2	75.74
Os01t0254100-01	Rice	nucleus	75.27	75.47
Bra009930.1-P	Field mustard	cytosol	71.91	75.44
AT5G27030.2	Thale cress	cytosol, endoplasmic reticulum	74.65	74.52
KXG32191	Sorghum	cytosol	73.94	74.4
Zm00001d040279_P012	Maize	cytosol	73.67	74.13
TraesCS3D01G179800.3	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	74.03	73.77
TraesCS3B01G204200.3	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	73.94	73.68
TraesCS3A01G173300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	73.76	73.5
GSMUA_Achr11P...	Banana	cytosol	71.64	71.45
GSMUA_Achr2P00320_001	Banana	cytosol	74.2	70.41
PGSC0003DMT400036646	Potato	cytosol, plastid	17.84	66.01
PGSC0003DMT400077797	Potato	cytosol	5.57	64.95
PGSC0003DMT400079377	Potato	cytosol	63.34	63.23
PGSC0003DMT400036657	Potato	cytosol, mitochondrion	3.62	60.29
KRH30800	Soybean	mitochondrion	16.87	58.59
PGSC0003DMT400036648	Potato	plastid	44.52	57.47
PGSC0003DMT400036649	Potato	cytosol	22.61	52.57
Zm00001d008338_P001	Maize	cytosol	59.19	48.17
PGSC0003DMT400036656	Potato	cytosol	8.13	47.42
PGSC0003DMT400028457	Potato	cytosol	41.96	40.25

Protein Annotations

EntrezGene:102590171	MapMan:11.2.2.2	MapMan:15.5.53.1	Gene3D:2.130.10.10	InterPro:CTLH_C	ncoils:Coil
GO:GO:0000003	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009653	GO:GO:0009790
GO:GO:0009791	GO:GO:0009987	GO:GO:0010072	InterPro:IPR001680	InterPro:IPR006594	InterPro:IPR006595
InterPro:IPR015943	InterPro:IPR017986	InterPro:LisH	UniProt:M1CAV5	PFAM:PF00400	EnsemblPlantsGene:PGSC0003DMG400024727
PGSC:PGSC0003DMG400024727	EnsemblPlants:PGSC0003DMT400063603	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PFscan:PS50896
PFscan:PS50897	PANTHER:PTHR44083	PANTHER:PTHR44083:SF3	InterPro:Quinoprotein_ADH-like_supfam	SMART:SM00320	SMART:SM00667
SMART:SM00668	SUPFAM:SSF50978	SUPFAM:SSF50998	InterPro:Topless_fam	UniParc:UPI0002967167	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_006344708.1	SEG:seg

Description

WD-repeat protein [Source:PGSC_GENE;Acc:PGSC0003DMG400024727]

Coordinates

chr1:+:77783720..77794129

Molecular Weight (calculated)

124724.0 Da

IEP (calculated)

7.148

GRAVY (calculated)

-0.239

Length

1132 amino acids

Sequence
(BLAST)

0001: MSSLSRELVF LILQFLEEEK FKESVHKLEQ ESGFFFNMKY FEEKVHAGEW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDKQDK AKAVEILVSD
0101: LKVFSTFNED LYKEITQLLT LTNFRENEQL SKYGDTKTAR SIMLIELKKL IEANPLFREK LVFPTLRSSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFT
0201: DHTCTPPNGA VAPTPVNLPP AAIAKPAAFT ALGAHGPFPP AAAAAANANA LAGWMANAAA SSSVQAAVVT ASSLPVPPNQ VSILKRPLTP PATLGMLDYQ
0301: SADHEQLMKR LRPAQSVEEV TYPTVRQQSS WSLDDLPRTV AFTLPQGSSV TSMDFHPSHH TYLLVGSTNG EITLWEVATR EKLVAKAFKI WDVQACTHTF
0401: QASASKDAPF SVSRVAWSPD GTFVGVAFSK HLVHLYATVG TNDLRQHLEM DAHAGSVNDL AFAYPNKQLC IVTCGDDKLI KVWDITGRKL FNFEGHEAPV
0501: YSICPHQKES IQFIFSTAID GKIKAWLYDN MGSRVDYDAP GHWCTTMLYS ADGTRLFSCG TGKEGDSFLV EWNESEGAIK RTYSGFRKKS AGVVQFDTTQ
0601: NHFLAVGEDS QIKFWDMDNI NILTTIDADG GLPSLPRLRF NKEGNLLAVT TADNGIKILG NAAGMRSLRT VEAPPFEALR SPIEAAAIKQ GSGSSVPNAT
0701: PVNCKVERSS PIRPSPILNG VDSVPRSMEK PRILEEVSDK AKPWQLTEIL DQAQCRLVTM PESSDSNNKV ARLLYTNSGV GILALGSNGT QKLWKWTRNE
0801: QNPSGKATAN VVPQYWQPNS GLLMTNDIVG INLEEAVPCI ALSKNDSYVM SAAGGKVSLF NMMTFKVMTT FMPPPPASTF LAFHPQDNNI IAIGMEDSTI
0901: HIYNVRVDEV KSKLKGHQKR ITGLAFSTNL NILVSSGADA QVCLWSIDSW DKRKSVPIQL PAGKAPSGDT RVQFHADQVR LLVSHETQLA IYDASKMERI
1001: RQWVPQDALS APITYAAYSC NSQLVYASFS DGNIGVFDAD TLRLRCRVAP SAYLSQAVLT GSQSVYPLVV AAHPQEPSQF AVGLTDGTVK VIEPLESDGK
1101: WGVSPPIDNG MLNGRVASSS NANNHVADQV QR

Best Arabidopsis Sequence Match ( AT5G27030.1 )
(BLAST)

0001: MSSLSRELVF LILQFLEEEK FKESVHRLEK ESGFFFNTKY FDEKVLAGEW DDVETYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDRQEK AKAVEILVQD
0101: LRVFSTFNEE LYKEITQLLT LQNFRENEQL SKYGDTKTAR GIMLGELKKL IEANPLFRDK LMFPTLRSSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFT
0201: DHTCTLPNGP LAPSAVNQPV TTLTKPAAYP SLGPHVPFPP GPAAANAGAL ASWMAAASGA SAVQAAVVTP ALMPQPQNQM SILKRPRTPP ATPGIVDYQN
0301: PDHELMKRLR PAPSVEEVTY PAPRQQAPWS LEDLPTKAAL ALHQGSTVTS MEFYPMQNTL LLVGSATGEI TLWELAARER LVSRPFKIWD MSNCSHQFQA
0401: LIAKETPISV TRVAWSPDGN FIGVAFTKHL IQLYAFSGPN DLRQHTEIDA HVGAVNDLAF ANPNRQLCVI TCGDDKLIKV WDVSGRKHFT FEGHDAPVYS
0501: ICPHYKENIQ FIFSTAIDGK IKAWLYDNLG SRVDYDAPGK WCTRMLYSAD GTRLFSCGTS KDGDSFLVEW NESEGSIKRT YKEFQKKLAG VVQFDTSKNH
0601: FLAVGEDGQI KFWDMNNINV LTSTDAEGGL PALPHLRFNK DGNLLAVTTA DNGFKILANP AGFRSLRAME TPASETMRTP VDFKAVPGAP VASVNCKVER
0701: GSPVRHSQML NGVDPSKSRI DDSTDKPKSW QLAEILDPSQ CFQATLPDTA GSSTKVVQLL YTNSGAGILA LGSNGIQRLW KWVPNEQNPS GKATATVVPQ
0801: HWQPNSGLLM TNDVSGVNLE NAAPCIALSK NDSYVMSAAG GKVSLFNMMT FKVMTTFMPP PPASTFLAFH PQDNNVIAIG MEDSTIHIYN VRVDEVKSKL
0901: KGHQKRITGL AFSTALNILV SSGADAQICF WSIDTWEKRK SVAIQMPAGK AANGDTRVQF HVDQLRILVV HETQLAVFDA SKMECIRQWI PQDSLSAPIS
1001: SAVYACNSQL IYTTFRDGNI GVFDADSLRL RCRISPSAYL PQGNQGLSPL VVAAHPQDPN QFAVGLNDGS VKMMEPTEGE GKWGMIPPSE AINSPSTTSN
1101: QTPEQLQR

Arabidopsis Description

TPR3TOPLESS-related 3 [Source:UniProtKB/TrEMBL;Acc:F4K2T3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.