Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400036657 | Potato | cytosol, mitochondrion | 11.7 | 83.82 |
| PGSC0003DMT400077797 | Potato | cytosol | 11.09 | 55.67 |
| PGSC0003DMT400036656 | Potato | cytosol | 21.15 | 53.09 |
| Solyc05g016070.1.1 | Tomato | cytosol | 12.12 | 45.04 |
| PGSC0003DMT400036648 | Potato | plastid | 74.95 | 41.62 |
| Os03t0254700-01 | Rice | cytosol | 63.24 | 27.18 |
| EER92538 | Sorghum | cytosol | 61.81 | 26.76 |
| TraesCS4D01G221200.1 | Wheat | cytosol | 62.22 | 26.72 |
| TraesCS4A01G083300.2 | Wheat | cytosol | 62.22 | 26.7 |
| GSMUA_Achr4P09920_001 | Banana | cytosol | 63.04 | 26.7 |
| GSMUA_Achr6P36440_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 63.24 | 26.69 |
| HORVU0Hr1G008690.1 | Barley | cytosol, endoplasmic reticulum | 62.22 | 26.67 |
| TraesCS4B01G220900.3 | Wheat | cytosol | 62.22 | 26.67 |
| Zm00001d028481_P017 | Maize | cytosol | 61.81 | 26.61 |
| Zm00001d047897_P013 | Maize | cytosol | 61.4 | 26.44 |
| PGSC0003DMT400079377 | Potato | cytosol | 58.52 | 25.13 |
| GSMUA_Achr6P22950_001 | Banana | plasma membrane | 63.66 | 25.04 |
| PGSC0003DMT400063603 | Potato | cytosol | 52.57 | 22.61 |
| PGSC0003DMT400028457 | Potato | cytosol | 40.66 | 16.78 |
| PGSC0003DMT400036646 | Potato | cytosol, plastid | 0.0 | 0.0 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001680 |
| InterPro:IPR015943 | InterPro:IPR017986 | UniProt:M1B3Z7 | PFAM:PF00400 | EnsemblPlantsGene:PGSC0003DMG402014138 | PGSC:PGSC0003DMG402014138 |
| EnsemblPlants:PGSC0003DMT400036649 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR44083 | PANTHER:PTHR44083:SF2 | SMART:SM00320 |
| SUPFAM:SSF50978 | SUPFAM:SSF69322 | InterPro:Topless_fam | UniParc:UPI000296D33D | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat |
| InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | : | : | : | : |
Description
WD-repeat protein [Source:PGSC_GENE;Acc:PGSC0003DMG402014138]
Coordinates
chr3:+:57122159..57129453
Molecular Weight (calculated)
53041.1 Da
IEP (calculated)
5.979
GRAVY (calculated)
-0.066
Length
487 amino acids
Sequence
(BLAST)
(BLAST)
001: GVVQFDTTKN RFLAADDDFS IKLWDMDHVQ LLTSIDADGG LPPTVNPISI ASANNSGFAD RVASVVGISG MAVVILGLLE SKNEDAGNVT PQLNVEPNDE
101: SKMWRLTEIR ESSQYRSLKL PENLGVTKIS SLIYTSSGNV ILALASNAIH LLWKWQKNER NSKGKATASV SPQLWQPSSG ILMTNDVHEP NHEEAVCCFA
201: LSKNDAYVIS TSGGRMSLFN MMAFKRVRTF MPPPPAATYI VFHPQDNNII AIGMGDSTIQ IYNVRLDVVK IKLKGHSKRI TGLAFSHVLN VLVSSGADSQ
301: LCVWSTVGWE MQRAKSLQLR GQSISQSDTR VQFHQDQTHF LVVHEAQIAV YETAKLECFK QWVPRESDAP ISHATYSCDS QLIYASFLDA TVCVFTAGNL
401: HMQCCIIPFA YLSPGISNSN IHPVVVAAHP EDPNQFALGM SDGGVHVFEP LESEGKWGVP PPLENGFAEG VPAAPSIAAS GFDQAPT
101: SKMWRLTEIR ESSQYRSLKL PENLGVTKIS SLIYTSSGNV ILALASNAIH LLWKWQKNER NSKGKATASV SPQLWQPSSG ILMTNDVHEP NHEEAVCCFA
201: LSKNDAYVIS TSGGRMSLFN MMAFKRVRTF MPPPPAATYI VFHPQDNNII AIGMGDSTIQ IYNVRLDVVK IKLKGHSKRI TGLAFSHVLN VLVSSGADSQ
301: LCVWSTVGWE MQRAKSLQLR GQSISQSDTR VQFHQDQTHF LVVHEAQIAV YETAKLECFK QWVPRESDAP ISHATYSCDS QLIYASFLDA TVCVFTAGNL
401: HMQCCIIPFA YLSPGISNSN IHPVVVAAHP EDPNQFALGM SDGGVHVFEP LESEGKWGVP PPLENGFAEG VPAAPSIAAS GFDQAPT
0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFFFNMKY FEDEVHNGNW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDKHDR PKAVDILVKD
0101: LKVFSTFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR AIMLVELKKL IEANPLFRDK LQFPTLRNSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCGPPNGA RAPSPVNNPL LGGIPKAGGF PPLGAHGPFQ PTASPVPTPL AGWMSSPSSV PHPAVSAGAI ALGGPSIPAA LKHPRTPPTN ASLDYPSADS
0301: EHVSKRTRPM GISDEVNLGV NMLPMSFSGQ AHGHSPAFKA PDDLPKTVAR TLSQGSSPMS MDFHPIKQTL LLVGTNVGDI GLWEVGSRER LVQKTFKVWD
0401: LSKCSMPLQA ALVKEPVVSV NRVIWSPDGS LFGVAYSRHI VQLYSYHGGE DMRQHLEIDA HVGGVNDISF STPNKQLCVI TCGDDKTIKV WDAATGVKRH
0501: TFEGHEAPVY SVCPHYKENI QFIFSTALDG KIKAWLYDNM GSRVDYDAPG RWCTTMAYSA DGTRLFSCGT SKDGESFIVE WNESEGAVKR TYQGFHKRSL
0601: GVVQFDTTKN RYLAAGDDFS IKFWDMDAVQ LLTAIDGDGG LQASPRIRFN KEGSLLAVSG NENVIKIMAN SDGLRLLHTF ENISSESSKP AINSIAAAAA
0701: AAATSAGHAD RSANVVSIQG MNGDSRNMVD VKPVITEESN DKSKIWKLTE VSEPSQCRSL RLPENLRVAK ISRLIFTNSG NAILALASNA IHLLWKWQRN
0801: ERNATGKATA SLPPQQWQPA SGILMTNDVA ETNPEEAVPC FALSKNDSYV MSASGGKISL FNMMTFKTMA TFMPPPPAAT FLAFHPQDNN IIAIGMDDST
0901: IQIYNVRVDE VKSKLKGHSK RITGLAFSNV LNVLVSSGAD AQLCVWNTDG WEKQRSKVLP LPQGRPNSAP SDTRVQFHQD QAHFLVVHET QLAIYETTKL
1001: ECMKQWAVRE SLAPITHATF SCDSQLVYAS FMDATVCVFS SANLRLRCRV NPSAYLPASL SNSNVHPLVI AAHPQEPNMF AVGLSDGGVH IFEPLESEGK
1101: WGVAPPAENG SASGAPTAPS VGASASDQPQ R
0101: LKVFSTFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR AIMLVELKKL IEANPLFRDK LQFPTLRNSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCGPPNGA RAPSPVNNPL LGGIPKAGGF PPLGAHGPFQ PTASPVPTPL AGWMSSPSSV PHPAVSAGAI ALGGPSIPAA LKHPRTPPTN ASLDYPSADS
0301: EHVSKRTRPM GISDEVNLGV NMLPMSFSGQ AHGHSPAFKA PDDLPKTVAR TLSQGSSPMS MDFHPIKQTL LLVGTNVGDI GLWEVGSRER LVQKTFKVWD
0401: LSKCSMPLQA ALVKEPVVSV NRVIWSPDGS LFGVAYSRHI VQLYSYHGGE DMRQHLEIDA HVGGVNDISF STPNKQLCVI TCGDDKTIKV WDAATGVKRH
0501: TFEGHEAPVY SVCPHYKENI QFIFSTALDG KIKAWLYDNM GSRVDYDAPG RWCTTMAYSA DGTRLFSCGT SKDGESFIVE WNESEGAVKR TYQGFHKRSL
0601: GVVQFDTTKN RYLAAGDDFS IKFWDMDAVQ LLTAIDGDGG LQASPRIRFN KEGSLLAVSG NENVIKIMAN SDGLRLLHTF ENISSESSKP AINSIAAAAA
0701: AAATSAGHAD RSANVVSIQG MNGDSRNMVD VKPVITEESN DKSKIWKLTE VSEPSQCRSL RLPENLRVAK ISRLIFTNSG NAILALASNA IHLLWKWQRN
0801: ERNATGKATA SLPPQQWQPA SGILMTNDVA ETNPEEAVPC FALSKNDSYV MSASGGKISL FNMMTFKTMA TFMPPPPAAT FLAFHPQDNN IIAIGMDDST
0901: IQIYNVRVDE VKSKLKGHSK RITGLAFSNV LNVLVSSGAD AQLCVWNTDG WEKQRSKVLP LPQGRPNSAP SDTRVQFHQD QAHFLVVHET QLAIYETTKL
1001: ECMKQWAVRE SLAPITHATF SCDSQLVYAS FMDATVCVFS SANLRLRCRV NPSAYLPASL SNSNVHPLVI AAHPQEPNMF AVGLSDGGVH IFEPLESEGK
1101: WGVAPPAENG SASGAPTAPS VGASASDQPQ R
Arabidopsis Description
TPLProtein TOPLESS [Source:UniProtKB/Swiss-Prot;Acc:Q94AI7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.