Factsheet for PGSC0003DMT400028457

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g029050.2.1	Tomato	cytosol	88.81	85.83
PGSC0003DMT400077797	Potato	cytosol	3.9	47.42
PGSC0003DMT400036648	Potato	plastid	33.98	45.72
VIT_04s0008g06340.t01	Wine grape	cytosol	6.53	44.77
PGSC0003DMT400079377	Potato	cytosol	42.8	44.53
PGSC0003DMT400036646	Potato	cytosol, plastid	11.36	43.79
VIT_04s0008g06330.t01	Wine grape	extracellular	41.86	43.45
PGSC0003DMT400063603	Potato	cytosol	40.25	41.96
KRH05196	Soybean	cytosol	19.15	41.62
KRH61732	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	37.37	41.6
PGSC0003DMT400036657	Potato	cytosol, mitochondrion	2.37	41.18
KRH52398	Soybean	cytosol	36.69	41.08
PGSC0003DMT400036649	Potato	cytosol	16.78	40.66
Zm00001d050983_P001	Maize	cytosol	6.78	32.0
Zm00001d004623_P001	Maize	cytosol, plastid	7.29	31.85
PGSC0003DMT400036656	Potato	cytosol	5.17	31.44
Zm00001d027915_P001	Maize	cytosol	7.03	26.77
Zm00001d045829_P001	Maize	mitochondrion	7.29	26.38
CDX79301	Canola	cytosol	4.66	25.35
Zm00001d052868_P001	Maize	cytosol, peroxisome, plasma membrane	4.66	23.31

Protein Annotations

EntrezGene:102596956	Gene3D:2.130.10.10	MapMan:35.1	InterPro:CTLH_C	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR001680	InterPro:IPR006594	InterPro:IPR006595	InterPro:IPR015943
InterPro:IPR017986	InterPro:LisH	UniProt:M1AR52	PFAM:PF00400	EnsemblPlantsGene:PGSC0003DMG400010959	PGSC:PGSC0003DMG400010959
EnsemblPlants:PGSC0003DMT400028457	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PFscan:PS50896	PFscan:PS50897
PANTHER:PTHR44083	PANTHER:PTHR44083:SF2	InterPro:Quinoprotein_ADH-like_supfam	SMART:SM00320	SMART:SM00667	SMART:SM00668
SUPFAM:SSF50978	SUPFAM:SSF50998	InterPro:Topless_fam	UniParc:UPI0002967D50	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_006343510.1	:	:

Description

WD-repeat protein [Source:PGSC_GENE;Acc:PGSC0003DMG400010959]

Coordinates

chr8:-:18457774..18466187

Molecular Weight (calculated)

129995.0 Da

IEP (calculated)

5.404

GRAVY (calculated)

-0.326

Length

1180 amino acids

Sequence
(BLAST)

0001: MSLSKDLIFL ILQFCNEENL TKTAHMLGQE TGFFFDMGHL EALVLGGKWD EIENYLSGFT GVTDSRYSKK MFFEIRKQKF LEALDRQDRK TALEILMKDL
0101: QVFAEPNKVL YAEMTQLLTF DDFREHPSLA LYGDTLTARN RIMKLLKVVI ESSPQFHGRL DFPELTKSRL RRLINQSLNW QHIHCAKPQQ EPEIKTLFAD
0201: HKCSIPEDQS VTQMPRPSQT ISAATPDQSV MQMPRPSQTI SAATPDQSVT QMPRPSETTS AANQDQSVTQ MPRPSETTSA ANQDQSVTQM PRPSETTSAA
0301: NQDQSFTQMP RPSETTSAAN QDQSFTQMPR PSKSISAANP DHRQIFSSSS IVTDDIASAS TSKAVQDSGN LSDVNTTRDM NEKVLSTTAP CQDQDASVNL
0401: SDDFPKTVER VLTIGANPPT TSDYPTISSN YPTVNYYPTT MDFHPVQQTL LIVGDGGGGV ELWDVSSGKM LFRRTLMMWE VEAFSAEFLK SMGEDPRISV
0501: NRVLWSSDGS LFGVASSKNI VQLYSYHNNV NHAENHLEIE AHYGSVNDLA FSKPNNQLLV ITCGEDKLVK VWNTNNGARQ YTFEGHGAPV YSLCAHVKED
0601: VHFIFSTSTN GEIKAWVYEN SGPSVSYEAP SKCCMRMLYS ANGKRLFSCG TNKDGDSYLV EWNENDGFIE RTYLGLGKCS SGVVEFDISR NNYVAAGDSH
0701: VIKVWNVNDA QLLTVVNAGG DLPASPYVRF NKNGTLLAVS VDQNSIKILA NDGGRIFLQT SLDASTYLST REIAGNSLSG PANSSPIDGI VPPEKTAENL
0801: ASMEHHKILG NPSTSKVVQI SRCQSLRLPS EVKTNKVCRL AYTQAGNMLV ALVADGIHLL WKWSESDSNL TGQTTPKCTP QLWQPRSGQS GVVLKNSLPS
0901: GDAGAVSPCI ALTNNGFYAL SASGGAVSIF NLNLYKKMKS ITPPTPAATC IACHPTNNNV IAVGMDDSTI IVYSVRSEEF ISRLQGHSKR ITGLAFSNTL
1001: NVLVSSGADS QIVVWNSTNW EREGSTMLQM SADWLPTEVS ETSVEYQRDE KCFLVVHETQ IAIYETTKLE CVKQWMIKNF CARISHATFS CDSEWIYTIM
1101: KDGIVLILSA SDLSPKYEID PSTFLTSDLS SHVFPVVVAA HPQNPNQLAL GLNDGGVVVI EPSESDGRWC EPPKATTQPI

Best Arabidopsis Sequence Match ( AT1G15750.3 )
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFFFNMKY FEDEVHNGNW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDKHDR PKAVDILVKD
0101: LKVFSTFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR AIMLVELKKL IEANPLFRDK LQFPTLRNSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCGPPNGA RAPSPVNNPL LGGIPKAGGF PPLGAHGPFQ PTASPVPTPL AGWMSSPSSV PHPAVSAGAI ALGGPSIPAA LKHPRTPPTN ASLDYPSADS
0301: EHVSKRTRPM GISDEVNLGV NMLPMSFSGQ AHGHSPAFKA PDDLPKTVAR TLSQGSSPMS MDFHPIKQTL LLVGTNVGDI GLWEVGSRER LVQKTFKVWD
0401: LSKCSMPLQA ALVKEPVVSV NRVIWSPDGS LFGVAYSRHI VQLYSYHGGE DMRQHLEIDA HVGGVNDISF STPNKQLCVI TCGDDKTIKV WDAATGVKRH
0501: TFEGHEAPVY SVCPHYKENI QFIFSTALDG KIKAWLYDNM GSRVDYDAPG RWCTTMAYSA DGTRLFSCGT SKDGESFIVE WNESEGAVKR TYQGFHKRSL
0601: GVVQFDTTKN RYLAAGDDFS IKFWDMDAVQ LLTAIDGDGG LQASPRIRFN KEGSLLAVSG NENVIKIMAN SDGLRLLHTF ENISSESSKP AINSIAAAAA
0701: AAATSAGHAD RSANVVSIQG MNGDSRNMVD VKPVITEESN DKSKIWKLTE VSEPSQCRSL RLPENLRVAK ISRLIFTNSG NAILALASNA IHLLWKWQRN
0801: ERNATGKATA SLPPQQWQPA SGILMTNDVA ETNPEEAVPC FALSKNDSYV MSASGGKISL FNMMTFKTMA TFMPPPPAAT FLAFHPQDNN IIAIGMDDST
0901: IQIYNVRVDE VKSKLKGHSK RITGLAFSNV LNVLVSSGAD AQLCVWNTDG WEKQRSKVLP LPQGRPNSAP SDTRVQFHQD QAHFLVVHET QLAIYETTKL
1001: ECMKQWAVRE SLAPITHATF SCDSQLVYAS FMDATVCVFS SANLRLRCRV NPSAYLPASL SNSNVHPLVI AAHPQEPNMF AVGLSDGGVH IFEPLESEGK
1101: WGVAPPAENG SASGAPTAPS VGASASDQPQ R

Arabidopsis Description

TPLProtein TOPLESS [Source:UniProtKB/Swiss-Prot;Acc:Q94AI7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.