Factsheet for PGSC0003DMT400079377

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g008040.2.1	Tomato	nucleus	94.53	97.72
VIT_11s0016g05620.t01	Wine grape	cytosol	80.07	80.21
KRH20137	Soybean	endoplasmic reticulum	79.72	79.79
KRH03669	Soybean	nucleus	79.63	79.63
PGSC0003DMT400077797	Potato	cytosol	6.44	75.26
PGSC0003DMT400036646	Potato	cytosol, plastid	18.52	68.63
PGSC0003DMT400036648	Potato	plastid	51.68	66.82
PGSC0003DMT400036657	Potato	cytosol, mitochondrion	3.88	64.71
PGSC0003DMT400063603	Potato	cytosol	63.23	63.34
Bra028653.1-P	Field mustard	mitochondrion	68.25	63.29
Bra006005.1-P	Field mustard	cytosol	56.17	59.31
PGSC0003DMT400036649	Potato	cytosol	25.13	58.52
PGSC0003DMT400036656	Potato	cytosol	9.44	55.15
Bra006006.1-P	Field mustard	cytosol	46.56	53.93
PGSC0003DMT400028457	Potato	cytosol	44.53	42.8
AT2G25420.4	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	22.66	34.4
CDX83225	Canola	cytosol	21.69	32.89
CDY38509	Canola	cytosol	22.13	32.77

Protein Annotations

EntrezGene:102582783	MapMan:11.2.2.2	MapMan:15.5.53.1	Gene3D:2.130.10.10	InterPro:CTLH_C	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR001680	InterPro:IPR006594	InterPro:IPR006595	InterPro:IPR015943
InterPro:IPR017986	InterPro:LisH	UniProt:M1D1Q8	PFAM:PF00400	EnsemblPlantsGene:PGSC0003DMG400030898	PGSC:PGSC0003DMG400030898
EnsemblPlants:PGSC0003DMT400079377	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PFscan:PS50896	PFscan:PS50897
PANTHER:PTHR44083	PANTHER:PTHR44083:SF4	SMART:SM00320	SMART:SM00667	SMART:SM00668	SUPFAM:SSF50978
InterPro:Topless_fam	UniParc:UPI0002956E45	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	RefSeq:XP_006358293.1	SEG:seg	:	:	:

Description

WD-repeat protein [Source:PGSC_GENE;Acc:PGSC0003DMG400030898]

Coordinates

chr7:+:4295156..4303158

Molecular Weight (calculated)

124666.0 Da

IEP (calculated)

6.971

GRAVY (calculated)

-0.331

Length

1134 amino acids

Sequence
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKDAVHKLEQ ESGFYFNMRH FDEMVGNGEW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDRNDR SKAVEILVKD
0101: LKVFSAFNEE LFKEITQLLT LDNFRDNEQL SKYGDTKSAR GIMLLELKKL IEANPLFRDK LTFPSLKNAR LRTLINQSLN WQHQLCKSPK PNPDIKTLFV
0201: DHSCGPSQPN GARAPSPVTH PLMGAVPKPG VFQALGPHGV TPFQQAPAPL QNALAGWMTN PSQVSHPSAS AGPIGFTTPN NAAAAMLKRP RTPTNNSTVD
0301: YQTADSEHML KRSRPFGVSD EVNNMPINIL PGGYSGQSHA QSSYSSDDLP KAFVMTLNQG SAVKSMDFHP VQQILLLVGT GTGEIMLWEL GSRERIANRN
0401: FKIWDLSQCS VALQASMASE YSASVNRVMW SPDGTLFGVA FSKHLVHVYS YHGGDDLRNH LEIEAHSGSV NDLAFSFPNK QICIVTCGDD RLIKVWDAVS
0501: GAKQYTFEGH EAPVYSVCPH HKESIQFIFS TAIDGKIKAW LYDNMGSRVD YDAPGHSSTT MAYSADGTRL FSCGTNKEGE SYLVEWNESE GAVKRTFSGL
0601: GKRAGGVVQF DTTKNRFLAA GDEFTIKFWE MDSVNLLTTT DADGGLPASP CLRFNKEGML LAVSTSDNGL KILANADGVR LLRSMENRPF DASRVSSASA
0701: VKPSTVGSFG PPSTSVAASF VDRAVPMASM NGESRNLGDA RPRAAEEPVD KSKIWKPTEI NDPSQCRSLK LPDSATAPKV TRLIYTNSGY AILALAANAV
0801: HKLWKWPRND RHPTGKANAS IVPQLWQPAS GTLMTNDTND TNPEEVVPCF ALSKNDSYVM SASGGKISLF NMMTFKTMTT FMPAPPAATF LAFHPQDNNV
0901: IAIGMDDSSI QIYNVRVDEV KTKLKGHHKR ITGLAFSNSL SVLISAGADS QLCVWSSDSW EKQTSKYLQI PAGRAAAPQA DTRVQFHQDQ TQLLVVHETQ
1001: IAIFEAPKLE CLKQWVPREV TGPITHATYS CDSQSIFVSF EDASVGVLSA YTLRWRCRIN PTSYLPANPS ARVHPLVIAA HPSDPNQFAL GLNDGAVVVL
1101: EPLEAEGKWG MLPPAENGTG PSTSGAANSD QPQR

Best Arabidopsis Sequence Match ( AT3G15880.4 )
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKDTVHRLEK ESGFFFNMRY FEDSVTAGEW DDVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDKKDH AKAVDILVKE
0101: LKVFSTFNEE LFKEITMLLT LTNFRENEQL SKYGDTKSAR GIMLGELKKL IEANPLFRDK LQFPSLKNSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHTCGHPNGA HTPSPTTNHL MGSVPKVGGF PPLGAHGPFQ PTPAPLTTSL AGWMPNPSVQ HPTVSAGPIG LGAPNSAVSM LKRERPRSPP TNSLSMDYQT
0301: ADSESVLKRP RPFGISDGVN NLPVNVLPVT YPGQSHAHAT YSTDDLPKNV SRILSQGSAI KSMDFHPVQQ TMLLVGTNLG DIAIWEVGSR EKLVSRSFKV
0401: WDLATCTVNL QASLASEYTA AVNRVVWSPD GGLLGVAYSK HIVHIYSYHG GEDLRNHLEI DAHAGNVNDL AFSQPNQQLC VVTCGEDKTI KVWDAVTGNK
0501: LHTFEGHEAP VYSVCPHQKE NIQFIFSTAV DGKIKAWLYD NMGSRVDYDA PGRSCTSMAY CADGTRLFSC GTSKEGESFI VEWNESEGAV KRTYLGLGKR
0601: SVGVVQFDTM KNKFLVAGDE FQVKFWDMDS VDLLSSTAAE GGLPSSPCLR INKEGTLLAV STTDNGIKIL ANAEGSRILH SMANRGLDSS RAPPGSVAKG
0701: PIVGTFGTPN SSTGMSLSMG ERSGPVASVT GLNGDNRSLP DVKPRIADDA EKSKTWKLTE ISERSQLRTL RLPDTLLPAR VVKLIYTNSG GAILALAENA
0801: AHKLWKWQKS ERNLLGKANS NVPPQLWQPS SGVLMTNDTR EGNKEDVVPC FALSKNDSYV MSASGGKISL FNMMTFKTMT TFMAPPPAAT SLAFHPQDNN
0901: IIAIGMDDSS IQIYNVRVDE VKSKLKGHQK RVTGLAFSNV LNVLVSSGAD SQLCVWSMDG WEKQASKQIQ IPSGHSPNPL AHTRVQFHQD QIHVLVVHAS
1001: QLAIYEAPKL ENMKQWIPKE SSGSVTDAVY SCDSQSIYAA FDDGSVSILT ATTLQLKCRI GPNSYLPSNP SSRVYPATVA AHPSEPNQFA VGLTDGGVHV
1101: IEPPGPEGKW GISAPPENGA GPSVSSAPGS DQQPR

Arabidopsis Description

WSIP2WUS-interacting protein 2 [Source:TAIR;Acc:AT3G15880]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.