Factsheet for VIT_11s0016g05620.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03669	Soybean	nucleus	87.19	87.04
KRH20137	Soybean	endoplasmic reticulum	87.01	86.94
PGSC0003DMT400079377	Potato	cytosol	80.21	80.07
Solyc07g008040.2.1	Tomato	nucleus	76.94	79.4
VIT_09s0002g07020.t01	Wine grape	cytosol	79.15	78.73
VIT_09s0002g08370.t01	Wine grape	cytosol	75.44	75.04
Bra028653.1-P	Field mustard	mitochondrion	72.61	67.21
VIT_16s0039g02410.t01	Wine grape	cytosol	66.7	66.52
VIT_14s0060g01680.t01	Wine grape	cytosol	62.72	62.72
Bra006005.1-P	Field mustard	cytosol	59.1	62.29
VIT_04s0008g06380.t01	Wine grape	cytosol	9.36	58.89
Bra006006.1-P	Field mustard	cytosol	48.5	56.08
VIT_04s0008g06340.t01	Wine grape	cytosol	8.48	55.81
VIT_04s0008g06350.t01	Wine grape	cytosol	6.45	54.48
VIT_04s0008g06400.t01	Wine grape	mitochondrion	9.1	50.74
VIT_04s0008g06330.t01	Wine grape	extracellular	50.88	50.66
VIT_04s0008g06360.t01	Wine grape	cytosol	3.18	46.75
VIT_04s0008g06390.t01	Wine grape	extracellular	8.66	44.75
AT2G25420.4	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	22.79	34.54
CDX83225	Canola	cytosol	22.79	34.49
CDY38509	Canola	cytosol	23.32	34.46
VIT_04s0008g06370.t01	Wine grape	cytosol	10.51	33.43

Protein Annotations

EntrezGene:100244059	wikigene:100244059	MapMan:11.2.2.2	MapMan:15.5.53.1	Gene3D:2.130.10.10	ProteinID:CCB51600
ProteinID:CCB51600.1	InterPro:CTLH_C	UniProt:F6HHA4	EMBL:FN595756	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR001680	InterPro:IPR006594	InterPro:IPR006595	InterPro:IPR015943	InterPro:IPR017986
EntrezGene:LOC100244059	wikigene:LOC100244059	InterPro:LisH	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PFscan:PS50896	PFscan:PS50897	PANTHER:PTHR44083	PANTHER:PTHR44083:SF4	InterPro:Quinoprotein_ADH-like_supfam
SMART:SM00320	SMART:SM00667	SMART:SM00668	SUPFAM:SSF50978	SUPFAM:SSF50998	TIGR:TC62887
InterPro:Topless_fam	UniParc:UPI0002108A93	ArrayExpress:VIT_11s0016g05620	EnsemblPlantsGene:VIT_11s0016g05620	EnsemblPlants:VIT_11s0016g05620.t01	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002285341	RefSeq:XP_002285341.2
RefSeq:XP_003633079	RefSeq:XP_003633079.1	RefSeq:XP_003633080	RefSeq:XP_003633080.1	RefSeq:XP_010656454.1	SEG:seg

Description

No Description!

Coordinates

chr11:-:5052405..5070991

Molecular Weight (calculated)

124783.0 Da

IEP (calculated)

6.931

GRAVY (calculated)

-0.295

Length

1132 amino acids

Sequence
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFFFNMRY FEETVTNGEW DDVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDKRDR AKAVEILVKD
0101: LKVFSAFNEE LFKEITQLLT LENFRDNEQL SKYGDTKSAR GIMLAELKKL IEANPLFRDK LQFPSLKNSR LRTLINQSLN WQHQLCKNPK ANPDIKTLFV
0201: DHTCGQPNGA RAPSPVTNPL MGTVPKAGGF PPLSAHGPFQ PAPAPLPTSL AGWMANPSPV PHPSASAGPM GLATANNAAI LKRPRTPPTN NPAMDYQTAD
0301: SEHVLKRPRP FGISDEVNNL PVNILPVAYT GQSHGQSSYS SDDLPKTVVM SLPQGSTVRS MDFHPVQQIL LLVGTNMGDI MVWDLGSRER LAIKNFKVWE
0401: LASCSMALQT SLANDYLASV NRVMWSPDGT LFGVAYSKHI VHLYSYHNGD DLRNHLEIEA HVGSVNDLAF SYPNKLCVVT CGEDRFIKVW DANTGSKQYT
0501: FEGHEAPVYS VCPHHKENIQ FIFSTAIDGK IKAWLYDNMG SRVDYDAPGH SSTTMAYSAD GTRLFSCGTN KEGDSYIVEW NESEGAVKRT YHGLGKRSVG
0601: VVQFDTTKNR FLAAGDEFLV KFWDMDNVNL LMTTDAEGGL PASPCIRFNK EGILLAVSTN ENGIKILANQ EGIRLLRTME NRSFDASRVA SAAVVKAPAI
0701: GTFPPANPAV GTSIGDRAAP VAAMVGMNSD NRSLVDVKPR IADESGEKSR IWKLTEINEQ SQCRSLRLPD NLTAMRVSRL MYTNSGFAIL ALASNAVHKL
0801: WKWQRNDRNI TTKATASVAP QLWQPSSGIL MTNEISDTNP EDAVPCFALS KNDSYVMSAS GGKVSLFNMM TFKTMTTFMP PPPAATFLAF HPQDNNIIAI
0901: GMEDSSIQIY NVRVDEVKTK LKGHQKRVTG LAFSPVLNVL VSSGADSQLC VWNTDGWEKQ ASKFLQVSPG QAAAPLADTR VQFHHDQIHL LAVHETQIAI
1001: FEASKLECLR QWVPREASGS ITHATYSCDS QSIFVSFEDG SVGVLTASTL RSRCRINPTA YLPPNPSLRV YPLVVAAHPS EPNQFALGLT DGGVCVLEPL
1101: ESEGKWGTSP PLENGAGPSS TSGAAGSDQP QR

Best Arabidopsis Sequence Match ( AT3G15880.4 )
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKDTVHRLEK ESGFFFNMRY FEDSVTAGEW DDVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDKKDH AKAVDILVKE
0101: LKVFSTFNEE LFKEITMLLT LTNFRENEQL SKYGDTKSAR GIMLGELKKL IEANPLFRDK LQFPSLKNSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHTCGHPNGA HTPSPTTNHL MGSVPKVGGF PPLGAHGPFQ PTPAPLTTSL AGWMPNPSVQ HPTVSAGPIG LGAPNSAVSM LKRERPRSPP TNSLSMDYQT
0301: ADSESVLKRP RPFGISDGVN NLPVNVLPVT YPGQSHAHAT YSTDDLPKNV SRILSQGSAI KSMDFHPVQQ TMLLVGTNLG DIAIWEVGSR EKLVSRSFKV
0401: WDLATCTVNL QASLASEYTA AVNRVVWSPD GGLLGVAYSK HIVHIYSYHG GEDLRNHLEI DAHAGNVNDL AFSQPNQQLC VVTCGEDKTI KVWDAVTGNK
0501: LHTFEGHEAP VYSVCPHQKE NIQFIFSTAV DGKIKAWLYD NMGSRVDYDA PGRSCTSMAY CADGTRLFSC GTSKEGESFI VEWNESEGAV KRTYLGLGKR
0601: SVGVVQFDTM KNKFLVAGDE FQVKFWDMDS VDLLSSTAAE GGLPSSPCLR INKEGTLLAV STTDNGIKIL ANAEGSRILH SMANRGLDSS RAPPGSVAKG
0701: PIVGTFGTPN SSTGMSLSMG ERSGPVASVT GLNGDNRSLP DVKPRIADDA EKSKTWKLTE ISERSQLRTL RLPDTLLPAR VVKLIYTNSG GAILALAENA
0801: AHKLWKWQKS ERNLLGKANS NVPPQLWQPS SGVLMTNDTR EGNKEDVVPC FALSKNDSYV MSASGGKISL FNMMTFKTMT TFMAPPPAAT SLAFHPQDNN
0901: IIAIGMDDSS IQIYNVRVDE VKSKLKGHQK RVTGLAFSNV LNVLVSSGAD SQLCVWSMDG WEKQASKQIQ IPSGHSPNPL AHTRVQFHQD QIHVLVVHAS
1001: QLAIYEAPKL ENMKQWIPKE SSGSVTDAVY SCDSQSIYAA FDDGSVSILT ATTLQLKCRI GPNSYLPSNP SSRVYPATVA AHPSEPNQFA VGLTDGGVHV
1101: IEPPGPEGKW GISAPPENGA GPSVSSAPGS DQQPR

Arabidopsis Description

WSIP2WUS-interacting protein 2 [Source:TAIR;Acc:AT3G15880]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.