Factsheet for VIT_16s0039g02410.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 2
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P05650_001	Banana	cytosol	80.26	80.41
GSMUA_Achr4P12340_001	Banana	cytosol	80.53	80.32
TraesCS7D01G293500.1	Wheat	golgi	80.18	79.96
TraesCS7A01G296100.6	Wheat	cytosol	80.18	79.96
GSMUA_Achr4P11600_001	Banana	cytosol	80.0	79.79
TraesCS7B01G189300.1	Wheat	cytosol	80.0	79.79
HORVU7Hr1G066930.5	Barley	cytosol	80.0	79.79
KXG24503	Sorghum	cytosol	80.0	79.79
Os08t0162100-01	Rice	nucleus	79.65	79.79
Solyc08g076030.2.1	Tomato	nucleus	79.38	79.38
GSMUA_Achr1P10830_001	Banana	cytosol	79.65	79.16
Zm00001d024523_P003	Maize	cytosol	79.56	78.32
GSMUA_Achr1P15450_001	Banana	cytosol	55.59	76.76
GSMUA_Achr4P04560_001	Banana	cytosol	76.92	74.74
VIT_09s0002g08370.t01	Wine grape	cytosol	68.72	68.54
VIT_11s0016g05620.t01	Wine grape	cytosol	66.52	66.7
VIT_09s0002g07020.t01	Wine grape	cytosol	65.64	65.47
VIT_14s0060g01680.t01	Wine grape	cytosol	64.23	64.4
GSMUA_AchrUn_...	Banana	cytosol	59.91	59.49
VIT_04s0008g06380.t01	Wine grape	cytosol	9.43	59.44
VIT_04s0008g06340.t01	Wine grape	cytosol	8.19	54.07
VIT_04s0008g06350.t01	Wine grape	cytosol	6.26	52.99
VIT_04s0008g06330.t01	Wine grape	extracellular	50.04	49.96
VIT_04s0008g06400.t01	Wine grape	mitochondrion	8.46	47.29
VIT_04s0008g06360.t01	Wine grape	cytosol	3.17	46.75
VIT_04s0008g06390.t01	Wine grape	extracellular	8.72	45.21
VIT_04s0008g06370.t01	Wine grape	cytosol	10.75	34.27

Protein Annotations

EntrezGene:100251131	wikigene:100251131	MapMan:11.2.2.2	MapMan:15.5.53.1	Gene3D:2.130.10.10	ProteinID:CBI26554
ProteinID:CBI26554.3	InterPro:CTLH_C	UniProt:D7T7T3	EMBL:FN595750	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR001680	InterPro:IPR006594	InterPro:IPR006595	InterPro:IPR015943	InterPro:IPR017986
EntrezGene:LOC100251131	wikigene:LOC100251131	InterPro:LisH	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PFscan:PS50896	PFscan:PS50897	PANTHER:PTHR44083	PANTHER:PTHR44083:SF5	InterPro:Quino_amine_DH_bsu
InterPro:Quinoprotein_ADH-like_supfam	SMART:SM00320	SMART:SM00667	SMART:SM00668	SUPFAM:SSF50969	SUPFAM:SSF50978
SUPFAM:SSF50998	TIGR:TC55758	InterPro:Topless_fam	UniParc:UPI00015C91C6	ArrayExpress:VIT_16s0039g02410	EnsemblPlantsGene:VIT_16s0039g02410
EnsemblPlants:VIT_16s0039g02410.t01	unigene:Vvi.3164	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	RefSeq:XP_002275116	RefSeq:XP_002275116.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr16:+:2596315..2608073

Molecular Weight (calculated)

125206.0 Da

IEP (calculated)

7.278

GRAVY (calculated)

-0.289

Length

1135 amino acids

Sequence
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFFFNMKH FEDQVQAGEW DEVERYLCGF TKVEDNRYSM KIFFEIRKQK YLEALDRQDR AKAVEILVKD
0101: LKVFASFNEE LFKEITQLLT LENFRQNEQL SKYGDTKSAR GIMLIELKKL IEANPLFRDK LTFPAFKASR LRTLINQSLN WQHQLCKNPR SNPDIKTLFT
0201: DHACTPTNGA RPPPPTNNPL VGPIPKAGAF PPIGAHNPFQ PVVSPSPGAI AGWMSSTNPS LPHAAVAAGP PSLVQPSTAA AFLKHQRTPT GVTGMDYQSG
0301: DSEHLMKRIR TGQSDEVSFS GVAHAPNVYS QDDLPKSVVR TITQGSNVMS MDFHPQQQTV LLVGTNVGDI SLWEVGSRER LAHKPFKVWD ISACSMPLQT
0401: ALLKDATISV NRCVWGPDGL ILGVAFSKHI VQIYTYNPTG ELRQHLEIDA HIGGVNDVAF AHPNKQLCIV TCGDDKTIKV WDAQTGRRLY TFEGHEAPVY
0501: SVCPHYKENI QFIFSTAIDG KIKAWLYDCL GSRVDYDAPG HWCTMMAYSA DGTRLFSCGT SKDGESHLVE WNESEGAIKR TYLGFRKRSL GVVQFDTTRN
0601: RFLAAGDEFQ IKFWDMDNTN ILTAVEAEGG LPASPRLRFN KEGSLLAVTT NDNGIKILAN NDGLRLTRML ESRPMEGHRG PSEPINSKPL IVNALGPAAN
0701: VSAAMSPSLE RSDRIQPAVS INNLATMDSS RLVDVKPKIS DDLEKIKSWK IPDIVDQSQL KALRLPDPVT TGKVVRLIYT NSGLALLALI SNAVHKLWKW
0801: QRSERNPLGK STAYVVPQLW QPANGTLMTN DTGDNNPPEE SAACIALSKN DSYVMSASGG KVSLFNMMTF KVMTTFMSPP PAATFLAFHP QDNNIIAIGM
0901: EDSTIQIYNV RVDEVKTKLK GHQKRVTGLA FSQILNCLVS SGADAQLCVW SIDGWEKRKS RFIQAPAGRS SPLVGDTKVQ FHNDQAHLLV VHESQIAVYD
1001: SKLECVRSWS PKDSLPAPIS SAIYSCDSML VYAGFGDGAV GVFDADSLRL RCRIAPSAYI PSPALSSGVY PLVIAAHPSE PNQIALGMSD GAVHVVEPTD
1101: TEPKWGGQPP QDNGSIPSNS SNPALSGQPT ELPPR

Best Arabidopsis Sequence Match ( AT1G15750.3 )
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFFFNMKY FEDEVHNGNW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDKHDR PKAVDILVKD
0101: LKVFSTFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR AIMLVELKKL IEANPLFRDK LQFPTLRNSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCGPPNGA RAPSPVNNPL LGGIPKAGGF PPLGAHGPFQ PTASPVPTPL AGWMSSPSSV PHPAVSAGAI ALGGPSIPAA LKHPRTPPTN ASLDYPSADS
0301: EHVSKRTRPM GISDEVNLGV NMLPMSFSGQ AHGHSPAFKA PDDLPKTVAR TLSQGSSPMS MDFHPIKQTL LLVGTNVGDI GLWEVGSRER LVQKTFKVWD
0401: LSKCSMPLQA ALVKEPVVSV NRVIWSPDGS LFGVAYSRHI VQLYSYHGGE DMRQHLEIDA HVGGVNDISF STPNKQLCVI TCGDDKTIKV WDAATGVKRH
0501: TFEGHEAPVY SVCPHYKENI QFIFSTALDG KIKAWLYDNM GSRVDYDAPG RWCTTMAYSA DGTRLFSCGT SKDGESFIVE WNESEGAVKR TYQGFHKRSL
0601: GVVQFDTTKN RYLAAGDDFS IKFWDMDAVQ LLTAIDGDGG LQASPRIRFN KEGSLLAVSG NENVIKIMAN SDGLRLLHTF ENISSESSKP AINSIAAAAA
0701: AAATSAGHAD RSANVVSIQG MNGDSRNMVD VKPVITEESN DKSKIWKLTE VSEPSQCRSL RLPENLRVAK ISRLIFTNSG NAILALASNA IHLLWKWQRN
0801: ERNATGKATA SLPPQQWQPA SGILMTNDVA ETNPEEAVPC FALSKNDSYV MSASGGKISL FNMMTFKTMA TFMPPPPAAT FLAFHPQDNN IIAIGMDDST
0901: IQIYNVRVDE VKSKLKGHSK RITGLAFSNV LNVLVSSGAD AQLCVWNTDG WEKQRSKVLP LPQGRPNSAP SDTRVQFHQD QAHFLVVHET QLAIYETTKL
1001: ECMKQWAVRE SLAPITHATF SCDSQLVYAS FMDATVCVFS SANLRLRCRV NPSAYLPASL SNSNVHPLVI AAHPQEPNMF AVGLSDGGVH IFEPLESEGK
1101: WGVAPPAENG SASGAPTAPS VGASASDQPQ R

Arabidopsis Description

TPLProtein TOPLESS [Source:UniProtKB/Swiss-Prot;Acc:Q94AI7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.