Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- cytosol 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_16s0039g02410.t01 | Wine grape | cytosol | 79.38 | 79.38 |
| GSMUA_Achr4P12340_001 | Banana | cytosol | 77.09 | 76.89 |
| GSMUA_Achr4P05650_001 | Banana | cytosol | 75.95 | 76.08 |
| GSMUA_Achr4P11600_001 | Banana | cytosol | 76.12 | 75.92 |
| GSMUA_Achr1P10830_001 | Banana | cytosol | 76.39 | 75.92 |
| KXG24503 | Sorghum | cytosol | 75.86 | 75.66 |
| Os08t0162100-01 | Rice | nucleus | 75.51 | 75.64 |
| TraesCS7B01G189300.1 | Wheat | cytosol | 75.77 | 75.57 |
| TraesCS7D01G293500.1 | Wheat | golgi | 75.68 | 75.48 |
| TraesCS7A01G296100.6 | Wheat | cytosol | 75.68 | 75.48 |
| HORVU7Hr1G066930.5 | Barley | cytosol | 75.33 | 75.13 |
| GSMUA_Achr1P15450_001 | Banana | cytosol | 54.19 | 74.82 |
| Zm00001d024523_P003 | Maize | cytosol | 75.86 | 74.67 |
| GSMUA_Achr4P04560_001 | Banana | cytosol | 74.98 | 72.86 |
| Solyc03g117360.2.1 | Tomato | nucleus | 67.84 | 68.14 |
| Solyc03g116750.2.1 | Tomato | nucleus | 65.11 | 65.28 |
| Solyc01g100050.2.1 | Tomato | nucleus | 63.35 | 63.52 |
| Solyc07g008040.2.1 | Tomato | nucleus | 60.88 | 62.99 |
| GSMUA_AchrUn_... | Banana | cytosol | 58.77 | 58.36 |
| Solyc03g117380.2.1 | Tomato | cytosol | 1.85 | 56.76 |
| Solyc05g016070.1.1 | Tomato | cytosol | 6.52 | 56.49 |
| Solyc03g117370.2.1 | Tomato | cytosol | 19.56 | 54.81 |
| Solyc03g117410.2.1 | Tomato | cytosol | 5.64 | 44.76 |
| Solyc08g029050.2.1 | Tomato | cytosol | 41.94 | 38.98 |
Protein Annotations
| MapMan:11.2.2.2 | MapMan:15.5.53.1 | Gene3D:2.130.10.10 | InterPro:CTLH_C | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | InterPro:IPR001680 | InterPro:IPR006594 | InterPro:IPR006595 | InterPro:IPR015943 | InterPro:IPR017986 |
| UniProt:K4CMX0 | InterPro:LisH | PFAM:PF00400 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 |
| PFscan:PS50896 | PFscan:PS50897 | PANTHER:PTHR44083 | PANTHER:PTHR44083:SF5 | SMART:SM00320 | SMART:SM00667 |
| SMART:SM00668 | SUPFAM:SSF50978 | EnsemblPlantsGene:Solyc08g076030.2 | EnsemblPlants:Solyc08g076030.2.1 | InterPro:Topless_fam | UniParc:UPI000276BAD4 |
| InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg |
Description
No Description!
Coordinates
chr8:-:60083958..60097604
Molecular Weight (calculated)
124607.0 Da
IEP (calculated)
7.209
GRAVY (calculated)
-0.312
Length
1135 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFFFNMKY FEEQVQAGEW DEVERYLSGF TKVEDNRYSM KIFFEIRKQK YLEALDKHDR VKAVEILVKD
0101: LKVFASFNED LFKEITQLLT LDNFRQNEQL SKYGDTKSAR NIMLVELKKL IEANPLFRDK LAFPSFKASR LRTLINQSLN WQHQLCKNPR PNPDIKTLFT
0201: DHTCASSNGT RPPPPVNTPL AGPVPKPGAF PPLGAHSPFQ PVVSPSPSAI AGWMSSANTS MSHTAVAPGP PGLVQAPGAA GFLKHPRANP GGPGMDFQMA
0301: ESEHLMKRMR AGQSDEVSFS GSTHPPNMYS PDDLPKTVVR NLSQGSNVMS MDFHPQQQTV LLVGTNVGDI SIWEVGSRER LAHKSFKVWD ISACSMPFQS
0401: ALVKDATVSV NRCVWGPDGS ILGVAFSKHI VQIYTYSPAG ELRQHLEIDA HAGGVNDIAF SHPNKQLCVV TCGDDKTIKV WDAVSGRREH MFEGHEAPVY
0501: SVCPHYKESI QFIFSTAIDG KIKAWLYDGM GSRVDYDAPG LWCTTMAYSA DGTRLFSCGT SKEGESHLVE WNESEGAIKR TFSGFRKRSL GVVQFDTTRN
0601: RFLAAGDEFQ IKFWEMDNTN MLTATDGDGG LPASPRLRFN KEGSLLAVTT SDNGIKVLAN TDGQRMLRML ESRAFEGSRA LSDVNVKPPI AGSLGPIPNI
0701: SGSAPQIIER SDRTQQSMSI GNLATMESSR GPDVKPRIAE NMDKIKSWKF SDIADSSQLK TLKLPDPLSA SKVLRLLYTN SGLSVLALSS NAIHKLWKWQ
0801: RNERNPSGKS SAAVVPQLWQ PTNGALMSND VGDAKSAEDA AACIALSKND SYVMSASGGK VSLFNMMTFK VMTTFMPPPP AATYLAFHPQ DNNVIAVGME
0901: DSTIQIYNVR VDEVKIKLKG HQKRITGLAF SQSLNVLVSS GADAQLCIWS VDGWEKKKAR PIQVPPGHQA PLVGETRVQF HNDQSHILVV HESQIGIYDT
1001: QLECQRSWYP RDSLSAPISS AIYSCDGLLI FTGFCDGAIG IFDADSLRLR CRIAPSAYLS SIGSGSGAAF PVVIAAHPSD SHQFALGMSD GTVHVIEPSD
1101: AEPKWGGSSS QENGAMPSIP SSSALNSQPS ETPSR
0101: LKVFASFNED LFKEITQLLT LDNFRQNEQL SKYGDTKSAR NIMLVELKKL IEANPLFRDK LAFPSFKASR LRTLINQSLN WQHQLCKNPR PNPDIKTLFT
0201: DHTCASSNGT RPPPPVNTPL AGPVPKPGAF PPLGAHSPFQ PVVSPSPSAI AGWMSSANTS MSHTAVAPGP PGLVQAPGAA GFLKHPRANP GGPGMDFQMA
0301: ESEHLMKRMR AGQSDEVSFS GSTHPPNMYS PDDLPKTVVR NLSQGSNVMS MDFHPQQQTV LLVGTNVGDI SIWEVGSRER LAHKSFKVWD ISACSMPFQS
0401: ALVKDATVSV NRCVWGPDGS ILGVAFSKHI VQIYTYSPAG ELRQHLEIDA HAGGVNDIAF SHPNKQLCVV TCGDDKTIKV WDAVSGRREH MFEGHEAPVY
0501: SVCPHYKESI QFIFSTAIDG KIKAWLYDGM GSRVDYDAPG LWCTTMAYSA DGTRLFSCGT SKEGESHLVE WNESEGAIKR TFSGFRKRSL GVVQFDTTRN
0601: RFLAAGDEFQ IKFWEMDNTN MLTATDGDGG LPASPRLRFN KEGSLLAVTT SDNGIKVLAN TDGQRMLRML ESRAFEGSRA LSDVNVKPPI AGSLGPIPNI
0701: SGSAPQIIER SDRTQQSMSI GNLATMESSR GPDVKPRIAE NMDKIKSWKF SDIADSSQLK TLKLPDPLSA SKVLRLLYTN SGLSVLALSS NAIHKLWKWQ
0801: RNERNPSGKS SAAVVPQLWQ PTNGALMSND VGDAKSAEDA AACIALSKND SYVMSASGGK VSLFNMMTFK VMTTFMPPPP AATYLAFHPQ DNNVIAVGME
0901: DSTIQIYNVR VDEVKIKLKG HQKRITGLAF SQSLNVLVSS GADAQLCIWS VDGWEKKKAR PIQVPPGHQA PLVGETRVQF HNDQSHILVV HESQIGIYDT
1001: QLECQRSWYP RDSLSAPISS AIYSCDGLLI FTGFCDGAIG IFDADSLRLR CRIAPSAYLS SIGSGSGAAF PVVIAAHPSD SHQFALGMSD GTVHVIEPSD
1101: AEPKWGGSSS QENGAMPSIP SSSALNSQPS ETPSR
0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFFFNMKY FEDEVHNGNW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDKHDR PKAVDILVKD
0101: LKVFSTFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR AIMLVELKKL IEANPLFRDK LQFPTLRNSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCGPPNGA RAPSPVNNPL LGGIPKAGGF PPLGAHGPFQ PTASPVPTPL AGWMSSPSSV PHPAVSAGAI ALGGPSIPAA LKHPRTPPTN ASLDYPSADS
0301: EHVSKRTRPM GISDEVNLGV NMLPMSFSGQ AHGHSPAFKA PDDLPKTVAR TLSQGSSPMS MDFHPIKQTL LLVGTNVGDI GLWEVGSRER LVQKTFKVWD
0401: LSKCSMPLQA ALVKEPVVSV NRVIWSPDGS LFGVAYSRHI VQLYSYHGGE DMRQHLEIDA HVGGVNDISF STPNKQLCVI TCGDDKTIKV WDAATGVKRH
0501: TFEGHEAPVY SVCPHYKENI QFIFSTALDG KIKAWLYDNM GSRVDYDAPG RWCTTMAYSA DGTRLFSCGT SKDGESFIVE WNESEGAVKR TYQGFHKRSL
0601: GVVQFDTTKN RYLAAGDDFS IKFWDMDAVQ LLTAIDGDGG LQASPRIRFN KEGSLLAVSG NENVIKIMAN SDGLRLLHTF ENISSESSKP AINSIAAAAA
0701: AAATSAGHAD RSANVVSIQG MNGDSRNMVD VKPVITEESN DKSKIWKLTE VSEPSQCRSL RLPENLRVAK ISRLIFTNSG NAILALASNA IHLLWKWQRN
0801: ERNATGKATA SLPPQQWQPA SGILMTNDVA ETNPEEAVPC FALSKNDSYV MSASGGKISL FNMMTFKTMA TFMPPPPAAT FLAFHPQDNN IIAIGMDDST
0901: IQIYNVRVDE VKSKLKGHSK RITGLAFSNV LNVLVSSGAD AQLCVWNTDG WEKQRSKVLP LPQGRPNSAP SDTRVQFHQD QAHFLVVHET QLAIYETTKL
1001: ECMKQWAVRE SLAPITHATF SCDSQLVYAS FMDATVCVFS SANLRLRCRV NPSAYLPASL SNSNVHPLVI AAHPQEPNMF AVGLSDGGVH IFEPLESEGK
1101: WGVAPPAENG SASGAPTAPS VGASASDQPQ R
0101: LKVFSTFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR AIMLVELKKL IEANPLFRDK LQFPTLRNSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCGPPNGA RAPSPVNNPL LGGIPKAGGF PPLGAHGPFQ PTASPVPTPL AGWMSSPSSV PHPAVSAGAI ALGGPSIPAA LKHPRTPPTN ASLDYPSADS
0301: EHVSKRTRPM GISDEVNLGV NMLPMSFSGQ AHGHSPAFKA PDDLPKTVAR TLSQGSSPMS MDFHPIKQTL LLVGTNVGDI GLWEVGSRER LVQKTFKVWD
0401: LSKCSMPLQA ALVKEPVVSV NRVIWSPDGS LFGVAYSRHI VQLYSYHGGE DMRQHLEIDA HVGGVNDISF STPNKQLCVI TCGDDKTIKV WDAATGVKRH
0501: TFEGHEAPVY SVCPHYKENI QFIFSTALDG KIKAWLYDNM GSRVDYDAPG RWCTTMAYSA DGTRLFSCGT SKDGESFIVE WNESEGAVKR TYQGFHKRSL
0601: GVVQFDTTKN RYLAAGDDFS IKFWDMDAVQ LLTAIDGDGG LQASPRIRFN KEGSLLAVSG NENVIKIMAN SDGLRLLHTF ENISSESSKP AINSIAAAAA
0701: AAATSAGHAD RSANVVSIQG MNGDSRNMVD VKPVITEESN DKSKIWKLTE VSEPSQCRSL RLPENLRVAK ISRLIFTNSG NAILALASNA IHLLWKWQRN
0801: ERNATGKATA SLPPQQWQPA SGILMTNDVA ETNPEEAVPC FALSKNDSYV MSASGGKISL FNMMTFKTMA TFMPPPPAAT FLAFHPQDNN IIAIGMDDST
0901: IQIYNVRVDE VKSKLKGHSK RITGLAFSNV LNVLVSSGAD AQLCVWNTDG WEKQRSKVLP LPQGRPNSAP SDTRVQFHQD QAHFLVVHET QLAIYETTKL
1001: ECMKQWAVRE SLAPITHATF SCDSQLVYAS FMDATVCVFS SANLRLRCRV NPSAYLPASL SNSNVHPLVI AAHPQEPNMF AVGLSDGGVH IFEPLESEGK
1101: WGVAPPAENG SASGAPTAPS VGASASDQPQ R
Arabidopsis Description
TPLProtein TOPLESS [Source:UniProtKB/Swiss-Prot;Acc:Q94AI7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.