Factsheet for GSMUA_Achr4P12340_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P05650_001	Banana	cytosol	91.56	91.97
GSMUA_Achr4P11600_001	Banana	cytosol	89.19	89.19
GSMUA_Achr1P10830_001	Banana	cytosol	86.2	85.9
Os08t0162100-01	Rice	nucleus	84.8	85.17
KXG24503	Sorghum	cytosol	84.45	84.45
GSMUA_Achr4P04560_001	Banana	cytosol	86.56	84.33
TraesCS7D01G293500.1	Wheat	golgi	84.01	84.01
TraesCS7A01G296100.6	Wheat	cytosol	84.01	84.01
TraesCS7B01G189300.1	Wheat	cytosol	83.83	83.83
GSMUA_Achr1P15450_001	Banana	cytosol	60.54	83.82
HORVU7Hr1G066930.5	Barley	cytosol	83.74	83.74
Zm00001d024523_P003	Maize	cytosol	84.01	82.91
VIT_16s0039g02410.t01	Wine grape	cytosol	80.32	80.53
GSMUA_Achr1P15460_001	Banana	endoplasmic reticulum, extracellular	27.07	77.58
Solyc08g076030.2.1	Tomato	nucleus	76.89	77.09
GSMUA_Achr4P09920_001	Banana	cytosol	68.37	67.65
GSMUA_Achr6P36440_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	68.1	67.16
GSMUA_AchrUn_...	Banana	cytosol	64.06	63.78
GSMUA_Achr6P22950_001	Banana	plasma membrane	68.37	62.84
GSMUA_Achr11P...	Banana	cytosol	61.42	61.59
GSMUA_Achr2P00320_001	Banana	cytosol	62.04	59.18

Protein Annotations

MapMan:11.2.2.2	MapMan:15.5.53.1	Gene3D:2.130.10.10	InterPro:CTLH_C	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr4G12340_001	EnsemblPlants:GSMUA_Achr4P12340_001	EnsemblPlants:GSMUA_Achr4T12340_001	InterPro:Haem_d1_sf	InterPro:IPR001680
InterPro:IPR006594	InterPro:IPR006595	InterPro:IPR015943	InterPro:IPR017986	InterPro:LisH	UniProt:M0SN99
PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PFscan:PS50896	PFscan:PS50897
PANTHER:PTHR44083	PANTHER:PTHR44083:SF5	InterPro:Quinoprotein_ADH-like_supfam	SMART:SM00320	SMART:SM00667	SMART:SM00668
SUPFAM:SSF50978	SUPFAM:SSF50998	SUPFAM:SSF51004	InterPro:Topless_fam	UniParc:UPI0002962424	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:

Description

Protein TOPLESS [Source:GMGC_GENE;Acc:GSMUA_Achr4G12340_001]

Coordinates

chr4:+:9119618..9129691

Molecular Weight (calculated)

125112.0 Da

IEP (calculated)

7.209

GRAVY (calculated)

-0.268

Length

1138 amino acids

Sequence
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFYFNMKH FEDLVQAGEW DDVERYLGGF TKVEDNRYSM KIFFEIRKQK YLEALDRHDR AKAVEILVKD
0101: LKVFASFNEE LFKEITQLLT LENFRQVTVD SNYGDTKSAR NIMLMELKKL IEANPLFRDK LNFPPFKSSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFT
0201: DHSCAASANG ARAPPPTNGP LVGAIPKSGG FPPMGAHSPF QPVVSPPASA IAGWMTNANP QLPHAAVAQA PPGLVQPPNT AAFLKHPRTP TSAPGMDYQT
0301: ADSEHLMKRM RMGQSDEVSF SSATHPPNIY SQDDIPKSVV RTLNQGSNVM SLDFHPVHQT ILLVGTNVGD IGIWEVGSRE RMVHRTFKVW DIGTCMPLQS
0401: ALMKDATISV NRCLWSPDGS IFGVAFSKHI VQTYAFNVSG ELRQQLEIDA HAGGVNDIAF SHPNKSLSII TCGDDKTIKV WDATTGQKHY TFEGHETPVY
0501: SVCPHYKESI QFIFSTAIDG KIKAWLYDCL GSRVDYDAPG RWCTTMAYSA DGTRLFSCGT SKDGESHLVE WNETEGAIKR TYSGFRKRSL GVVQFDTTKN
0601: RFLAAGDEFM IKFWDMDNTN ILTTTDADGG LPASPRLRFN REGSLLAVTT SDNGIKILAN PDGLRLVRML ESRAFEGPRG SSQQISGNVK PPIVNSLGAV
0701: SNVSSPMAAA IEVTDRTLPV VSMSSLAAMD NNRTLDIKPK ISDDSEKIKN WKLADIVDSA HLKALRLPDS MTTSSKVVRL LYTNSGLAVL ALGSNAIHKL
0801: WKWTRNERNP SGKSTASVAP QLWQPSNGIL MTNETSDNNP EEATACIALS KNDSYVMSAS GGKVSLFNMM TFKVMTTFMA PPPAATFLAF HPQDNNIIAI
0901: GMEDSSIQIY NVRVDEVKTK LKGHQKKITG LAFSQSLNVL VSSGADAQLC MWSIDGWEKK KTRFIQAPTS RAAQLVGDTK VQFHNDQTHL LVVHETQLAI
1001: YDSKLECLRS WSPRDALPAA ISSAVYSCDG LLVYAGFCDG AVGVFEADGL RLRCRIAPTA YISSSISSSG AVYPMVIAAH PSEPNQIALG MTDGAVHVVE
1101: PSDADSKWGV APPQENGALP AIAANPANSS QVSEPPPR

Best Arabidopsis Sequence Match ( AT1G15750.3 )
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFFFNMKY FEDEVHNGNW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDKHDR PKAVDILVKD
0101: LKVFSTFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR AIMLVELKKL IEANPLFRDK LQFPTLRNSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCGPPNGA RAPSPVNNPL LGGIPKAGGF PPLGAHGPFQ PTASPVPTPL AGWMSSPSSV PHPAVSAGAI ALGGPSIPAA LKHPRTPPTN ASLDYPSADS
0301: EHVSKRTRPM GISDEVNLGV NMLPMSFSGQ AHGHSPAFKA PDDLPKTVAR TLSQGSSPMS MDFHPIKQTL LLVGTNVGDI GLWEVGSRER LVQKTFKVWD
0401: LSKCSMPLQA ALVKEPVVSV NRVIWSPDGS LFGVAYSRHI VQLYSYHGGE DMRQHLEIDA HVGGVNDISF STPNKQLCVI TCGDDKTIKV WDAATGVKRH
0501: TFEGHEAPVY SVCPHYKENI QFIFSTALDG KIKAWLYDNM GSRVDYDAPG RWCTTMAYSA DGTRLFSCGT SKDGESFIVE WNESEGAVKR TYQGFHKRSL
0601: GVVQFDTTKN RYLAAGDDFS IKFWDMDAVQ LLTAIDGDGG LQASPRIRFN KEGSLLAVSG NENVIKIMAN SDGLRLLHTF ENISSESSKP AINSIAAAAA
0701: AAATSAGHAD RSANVVSIQG MNGDSRNMVD VKPVITEESN DKSKIWKLTE VSEPSQCRSL RLPENLRVAK ISRLIFTNSG NAILALASNA IHLLWKWQRN
0801: ERNATGKATA SLPPQQWQPA SGILMTNDVA ETNPEEAVPC FALSKNDSYV MSASGGKISL FNMMTFKTMA TFMPPPPAAT FLAFHPQDNN IIAIGMDDST
0901: IQIYNVRVDE VKSKLKGHSK RITGLAFSNV LNVLVSSGAD AQLCVWNTDG WEKQRSKVLP LPQGRPNSAP SDTRVQFHQD QAHFLVVHET QLAIYETTKL
1001: ECMKQWAVRE SLAPITHATF SCDSQLVYAS FMDATVCVFS SANLRLRCRV NPSAYLPASL SNSNVHPLVI AAHPQEPNMF AVGLSDGGVH IFEPLESEGK
1101: WGVAPPAENG SASGAPTAPS VGASASDQPQ R

Arabidopsis Description

TPLProtein TOPLESS [Source:UniProtKB/Swiss-Prot;Acc:Q94AI7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.