Factsheet for Zm00001d024523_P003

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG24503	Sorghum	cytosol	97.48	98.77
Os08t0162100-01	Rice	nucleus	90.37	91.97
TraesCS7D01G293500.1	Wheat	golgi	90.63	91.83
TraesCS7A01G296100.6	Wheat	cytosol	90.63	91.83
TraesCS7B01G189300.1	Wheat	cytosol	90.55	91.74
HORVU7Hr1G066930.5	Barley	cytosol	90.37	91.56
GSMUA_Achr4P11600_001	Banana	cytosol	83.43	84.53
GSMUA_Achr4P05650_001	Banana	cytosol	82.91	84.38
GSMUA_Achr4P12340_001	Banana	cytosol	82.91	84.01
GSMUA_Achr1P10830_001	Banana	cytosol	81.44	82.22
GSMUA_Achr1P15450_001	Banana	cytosol	58.54	82.12
GSMUA_Achr4P04560_001	Banana	cytosol	80.75	79.71
VIT_16s0039g02410.t01	Wine grape	cytosol	78.32	79.56
Solyc08g076030.2.1	Tomato	nucleus	74.67	75.86
Zm00001d047897_P013	Maize	cytosol	67.39	68.7
Zm00001d028481_P017	Maize	cytosol	67.04	68.35
Zm00001d040279_P012	Maize	cytosol	62.36	63.91
GSMUA_AchrUn_...	Banana	cytosol	61.14	61.68
Zm00001d008338_P001	Maize	cytosol	53.08	44.0
Zm00001d050983_P001	Maize	cytosol	8.76	40.4
Zm00001d004623_P001	Maize	cytosol, plastid	8.76	37.41
Zm00001d027915_P001	Maize	cytosol	9.45	35.16
Zm00001d045829_P001	Maize	mitochondrion	9.37	33.13
Zm00001d052868_P001	Maize	cytosol, peroxisome, plasma membrane	6.33	30.93

Protein Annotations

EntrezGene:100381576	MapMan:11.2.2.2	MapMan:15.5.53.1	Gene3D:2.130.10.10	UniProt:A0A1D6IZT1	ProteinID:AQK41393.1
InterPro:CTLH_C	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001680	InterPro:IPR006594
InterPro:IPR006595	InterPro:IPR015943	InterPro:IPR017986	InterPro:LisH	PFAM:PF00400	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PFscan:PS50896	PFscan:PS50897	PANTHER:PTHR44083	PANTHER:PTHR44083:SF5
InterPro:Quinoprotein_ADH-like_supfam	SMART:SM00320	SMART:SM00667	SMART:SM00668	SUPFAM:SSF50978	SUPFAM:SSF50998
SUPFAM:SSF63829	InterPro:Topless_fam	UniParc:UPI0008426A8F	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	EnsemblPlantsGene:Zm00001d024523	EnsemblPlants:Zm00001d024523_P003	EnsemblPlants:Zm00001d024523_T003	SEG:seg

Description

ramosa1 enhancer locus2Ramosa 1 enhancer locus 2%3B Ramosa1 enhancer locus2

Coordinates

chr10:-:75993828..76002912

Molecular Weight (calculated)

126993.0 Da

IEP (calculated)

7.341

GRAVY (calculated)

-0.303

Length

1153 amino acids

Sequence
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFYFNMKH FEDLVQGGEW DEVEKYLSGF TKVEDNRYSM KIFFEIRKQK YLEALDRHDR AKAVEILVKD
0101: LKVFASFNEE LFKEITQLLT LENFRQNEQL SKYGDTKSAR NIMLLELKKL IEANPLFRDK LNFPPFKASR LRTLINQSLN WQHQLCKNPR PNPDIKTLFT
0201: DHSCAAPTNG ARAPPPANGP LGSIPKSAGF PPMGAHAPFQ PVVSPSPNAI AGWMTNANPS LPHAAVAQGP PGLVQAPNTA AFLKHPRTPT SAPGIDYQSA
0301: DSEHLMKRMR VGQPDEVSFS GASHPANMYT QEDLPKQVSR TLNQGSNVMS LDFHPVQQTI LLVGTNVGDI AVWEVGSRER IAHKTFKVWD IGSCTLPLQA
0401: SLMKDAAVSV NRCLWSPDGT ILGVAFSKHI VQTYTFVPNG DLRQQAEIDA HIGGVNDIAF SHPNKTLSII TCGDDKLIKV WDAQTGQKQY TFEGHEAPVY
0501: SVCPHYKESI QFIFSTAIDG KIKAWLYDCL GSRVDYDAPG HWCTTMAYSA DGTRLFSCGT SKEGDSHLVE WNETEGAIKR TYNGFRKRSL GVVQFDTTRN
0601: RFLAAGDEFL VKFWDMDNNN ILTTTDCDGG LPVSIFLFLI PVRAASPRLR FNREGSLLAV TTSDNGIKIL ANTDGQRLLR MLESRAFEGS RGPPQQINTK
0701: PPIVALGPVS NVSSPIAVNA ERPDRILPAV STSGLAPMDA SRTPDVKPRI TDESEKVKTW KLADIVDNGH LRALHLTDTD TNPSKIVRLL YTNNGVALLA
0801: LGSNAVHKLW KWQRSDRNPS GKSTASVAPH LWQPANGILM TNDTNDGNPE EATACIALSK NDSYVMSASG GKVSLFNMMT FKVMTTFMAP PPAATFLAFH
0901: PQDNNIIAIG MEDSTIQIYN VRIDDVKSKL KGHQKKITGL AFSQSMNVLV SSGADAQLCV WSIDGWEKKK SRYIQPPANR PGTLVGDTRV QFHNDQTHLL
1001: VVHESQLGIY DGNLDCLRLW SPRDALPAPI SSAIYSCDGL LVYAGFCDGA IGVFEAESLR LRCRIAPSAY IPPSILACAG RVYPLVVAAH PMEPNQIAIG
1101: MSDGKVHVVE PLDGDPKWGS APPQDNGAHP HPHPAISAAP STATNQASDQ PTR

Best Arabidopsis Sequence Match ( AT1G15750.1 )
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFFFNMKY FEDEVHNGNW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDKHDR PKAVDILVKD
0101: LKVFSTFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR AIMLVELKKL IEANPLFRDK LQFPTLRNSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCGPPNGA RAPSPVNNPL LGGIPKAGGF PPLGAHGPFQ PTASPVPTPL AGWMSSPSSV PHPAVSAGAI ALGGPSIPAA LKHPRTPPTN ASLDYPSADS
0301: EHVSKRTRPM GISDEVNLGV NMLPMSFSGQ AHGHSPAFKA PDDLPKTVAR TLSQGSSPMS MDFHPIKQTL LLVGTNVGDI GLWEVGSRER LVQKTFKVWD
0401: LSKCSMPLQA ALVKEPVVSV NRVIWSPDGS LFGVAYSRHI VQLYSYHGGE DMRQHLEIDA HVGGVNDISF STPNKQLCVI TCGDDKTIKV WDAATGVKRH
0501: TFEGHEAPVY SVCPHYKENI QFIFSTALDG KIKAWLYDNM GSRVDYDAPG RWCTTMAYSA DGTRLFSCGT SKDGESFIVE WNESEGAVKR TYQGFHKRSL
0601: GVVQFDTTKN RYLAAGDDFS IKFWDMDAVQ LLTAIDGDGG LQASPRIRFN KEGSLLAVSG NENVIKIMAN SDGLRLLHTF ENISSESSKP AINSIAAAAA
0701: AAATSAGHAD RSANVVSIQG MNGDSRNMVD VKPVITEESN DKSKIWKLTE VSEPSQCRSL RLPENLRVAK ISRLIFTNSG NAILALASNA IHLLWKWQRN
0801: ERNATGKATA SLPPQQWQPA SGILMTNDVA ETNPEEAVPC FALSKNDSYV MSASGGKISL FNMMTFKTMA TFMPPPPAAT FLAFHPQDNN IIAIGMDDST
0901: IQIYNVRVDE VKSKLKGHSK RITGLAFSNV LNVLVSSGAD AQLCVWNTDG WEKQRSKVLP LPQGRPNSAP SDTRVQFHQD QAHFLVVHET QLAIYETTKL
1001: ECMKQWAVRE SLAPITHATF SCDSQLVYAS FMDATVCVFS SANLRLRCRV NPSAYLPASL SNSNVHPLVI AAHPQEPNMF AVGLSDGGVH IFEPLESEGK
1101: WGVAPPAENG SASGAPTAPS VGASASDQPQ R

Arabidopsis Description

TPLProtein TOPLESS [Source:UniProtKB/Swiss-Prot;Acc:Q94AI7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.