Factsheet for Zm00001d028481_P017

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92538	Sorghum	cytosol	96.82	97.33
Zm00001d047897_P013	Maize	cytosol	97.17	97.17
Os03t0254700-01	Rice	cytosol	92.22	92.06
HORVU0Hr1G008690.1	Barley	cytosol, endoplasmic reticulum	91.25	90.85
TraesCS4D01G221200.1	Wheat	cytosol	90.98	90.74
TraesCS4A01G083300.2	Wheat	cytosol	90.98	90.66
TraesCS4B01G220900.3	Wheat	cytosol	90.89	90.49
GSMUA_Achr4P09920_001	Banana	cytosol	83.64	82.26
GSMUA_Achr6P36440_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	82.67	81.02
GSMUA_Achr6P22950_001	Banana	plasma membrane	83.47	76.25
PGSC0003DMT400036648	Potato	plastid	58.53	75.48
PGSC0003DMT400036646	Potato	cytosol, plastid	20.34	75.16
Zm00001d024523_P003	Maize	cytosol	68.35	67.04
PGSC0003DMT400036649	Potato	cytosol	26.61	61.81
Zm00001d040279_P012	Maize	cytosol	61.1	61.42
Zm00001d050983_P001	Maize	cytosol	13.17	59.6
Solyc05g016070.1.1	Tomato	cytosol	6.37	54.96
Zm00001d004623_P001	Maize	cytosol, plastid	12.91	54.07
Zm00001d027915_P001	Maize	cytosol	13.09	47.74
Zm00001d045829_P001	Maize	mitochondrion	12.64	43.87
Zm00001d008338_P001	Maize	cytosol	51.37	41.77
Zm00001d052868_P001	Maize	cytosol, peroxisome, plasma membrane	8.58	41.1

Protein Annotations

EntrezGene:100276114	MapMan:11.2.2.2	MapMan:15.5.53.1	Gene3D:2.130.10.10	UniProt:A0A1D6JWN4	InterPro:CTLH_C
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001680	InterPro:IPR006594	InterPro:IPR006595
InterPro:IPR015943	InterPro:IPR017986	InterPro:LisH	ProteinID:ONL96174.1	PFAM:PF00400	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PFscan:PS50896	PFscan:PS50897	PANTHER:PTHR44083	PANTHER:PTHR44083:SF2
SMART:SM00320	SMART:SM00667	SMART:SM00668	SUPFAM:SSF50978	InterPro:Topless_fam	UniParc:UPI000844B6A6
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	EnsemblPlantsGene:Zm00001d028481
EnsemblPlants:Zm00001d028481_P017	EnsemblPlants:Zm00001d028481_T017	SEG:seg	:	:	:

Description

topless-related2 topless-related2

Coordinates

chr1:+:36474840..36485204

Molecular Weight (calculated)

124979.0 Da

IEP (calculated)

7.048

GRAVY (calculated)

-0.336

Length

1131 amino acids

Sequence
(BLAST)

0001: MTSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFYFNIKY FEDEVLNGNW DEVERYLGGF TKVDDNRYSM KIFFEIRKQK YLEALDKHDR SKAVEILVKD
0101: LKVFASFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR QIMLAELKKL IEANPLFRDK LQFPSLKTSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCGQPNGA RAPSPANSPL LGSMPKPGGF PPLGAHGPFQ PAPTPVPPLA GWMSNPPAIT HPAVSGGAIG FGTPTNPAVL LKHPRTPTTG NPGMDYPSGD
0301: SDHISKRTRP VGMSEEMNLP VNMLPVTYPQ SHNYQQDDFH KAVARTLSQG SAPMSMDFHP LQQTLLLVGT NVGDIGLWDV GTKERLVVRN FKVWDLGKCT
0401: MTLQAALVKD PAVSVNRIIW SPDGTLFGVA YSRHIVQIYS YNGGDDIRQH LEIDAHVGGV NDIAFAHPNK QLCIITCGDD KTIKVWEATS GAKQFTFEGH
0501: EAPVYSVCPH YKENIQFIFS TALDGKIKAW LYDNLGSRVD YDAPGHWCTT MAYSADGSRL FSCGTSKDGE SHLVEWNESE GAVKRTYQGF RKRSMGVVQF
0601: DTTRNRFLAA GDEFMIKIWD MDSTGLLTTI DADGGLTASP RIRFNKEGTL LAVSTADNGI KILANADGLR LLRTLENRSF DASRNASEAV TKPLINPLTA
0701: AANAAAASSS GAGAPSAITA MNEQNGDSRS LVDVKPRIAD ESLDKSKVWK LMEITESSQC RSIKLADNMR TSKISRLIYT NSGLAILALT SSAVHLLWKW
0801: PRSDRNSGKA TASVSPTLWQ PPSGILMTND TTDNNPEEAV HCFALSKNDS YVMSASGGKI SLFNMMTFKT MTTFMPAPPA ATFLAFHPQD NNIIAIGMDD
0901: STIQIYNVRI DEVKSKLRGH SKRITGLAFS NVLNVLVSSG ADAQLCVWNT DGWEKQKNRF LQIPSGRQSN ILDTRVQFHQ DQMHFLVVHE TQIAIYETTK
1001: LEPVKQWPVR ENSPPITHAT FSCDSQLIYA SFMDATVGIF NGSSLRLQCR ILPASYLPPN ISPSVHPVVV AAHPSEASQF ALGLTDGGVF VLEPLESERK
1101: WGNPPPVENG SASNLSTPPP NGASSSDQPE R

Best Arabidopsis Sequence Match ( AT1G15750.1 )
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFFFNMKY FEDEVHNGNW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDKHDR PKAVDILVKD
0101: LKVFSTFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR AIMLVELKKL IEANPLFRDK LQFPTLRNSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCGPPNGA RAPSPVNNPL LGGIPKAGGF PPLGAHGPFQ PTASPVPTPL AGWMSSPSSV PHPAVSAGAI ALGGPSIPAA LKHPRTPPTN ASLDYPSADS
0301: EHVSKRTRPM GISDEVNLGV NMLPMSFSGQ AHGHSPAFKA PDDLPKTVAR TLSQGSSPMS MDFHPIKQTL LLVGTNVGDI GLWEVGSRER LVQKTFKVWD
0401: LSKCSMPLQA ALVKEPVVSV NRVIWSPDGS LFGVAYSRHI VQLYSYHGGE DMRQHLEIDA HVGGVNDISF STPNKQLCVI TCGDDKTIKV WDAATGVKRH
0501: TFEGHEAPVY SVCPHYKENI QFIFSTALDG KIKAWLYDNM GSRVDYDAPG RWCTTMAYSA DGTRLFSCGT SKDGESFIVE WNESEGAVKR TYQGFHKRSL
0601: GVVQFDTTKN RYLAAGDDFS IKFWDMDAVQ LLTAIDGDGG LQASPRIRFN KEGSLLAVSG NENVIKIMAN SDGLRLLHTF ENISSESSKP AINSIAAAAA
0701: AAATSAGHAD RSANVVSIQG MNGDSRNMVD VKPVITEESN DKSKIWKLTE VSEPSQCRSL RLPENLRVAK ISRLIFTNSG NAILALASNA IHLLWKWQRN
0801: ERNATGKATA SLPPQQWQPA SGILMTNDVA ETNPEEAVPC FALSKNDSYV MSASGGKISL FNMMTFKTMA TFMPPPPAAT FLAFHPQDNN IIAIGMDDST
0901: IQIYNVRVDE VKSKLKGHSK RITGLAFSNV LNVLVSSGAD AQLCVWNTDG WEKQRSKVLP LPQGRPNSAP SDTRVQFHQD QAHFLVVHET QLAIYETTKL
1001: ECMKQWAVRE SLAPITHATF SCDSQLVYAS FMDATVCVFS SANLRLRCRV NPSAYLPASL SNSNVHPLVI AAHPQEPNMF AVGLSDGGVH IFEPLESEGK
1101: WGVAPPAENG SASGAPTAPS VGASASDQPQ R

Arabidopsis Description

TPLProtein TOPLESS [Source:UniProtKB/Swiss-Prot;Acc:Q94AI7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.