Factsheet for TraesCS4B01G220900.3

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G083300.2	Wheat	cytosol	99.65	99.74
TraesCS4D01G221200.1	Wheat	cytosol	99.47	99.65
HORVU0Hr1G008690.1	Barley	cytosol, endoplasmic reticulum	98.24	98.24
Os03t0254700-01	Rice	cytosol	93.49	93.73
EER92538	Sorghum	cytosol	90.76	91.64
Zm00001d028481_P017	Maize	cytosol	90.49	90.89
Zm00001d047897_P013	Maize	cytosol	90.32	90.72
GSMUA_Achr4P09920_001	Banana	cytosol	83.98	82.96
GSMUA_Achr6P36440_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	83.54	82.24
KRH23604	Soybean	endoplasmic reticulum	80.81	81.1
KRH44501	Soybean	cytosol	80.37	80.58
KRH47407	Soybean	cytosol	80.02	80.44
VIT_09s0002g08370.t01	Wine grape	cytosol	80.28	80.14
KRH09700	Soybean	cytosol	79.14	79.56
AT1G15750.3	Thale cress	cytosol	77.99	78.34
CDX81729	Canola	cytosol	76.85	78.16
CDY53312	Canola	cytosol	75.35	78.1
Bra026751.1-P	Field mustard	cytosol	77.55	77.96
Bra003569.1-P	Field mustard	cytosol	74.74	77.96
CDY36584	Canola	cytosol	76.67	77.91
CDY33387	Canola	cytosol	76.67	77.91
Bra026112.1-P	Field mustard	cytosol	76.76	77.86
AT1G80490.2	Thale cress	cytosol	76.67	77.77
CDX67950	Canola	cytosol	76.58	77.4
CDX79383	Canola	cytosol	76.06	77.14
GSMUA_Achr6P22950_001	Banana	plasma membrane	83.71	76.82
PGSC0003DMT400036646	Potato	cytosol, plastid	20.69	76.8
PGSC0003DMT400036648	Potato	plastid	58.19	75.37
TraesCS7B01G189300.1	Wheat	cytosol	67.43	67.31
PGSC0003DMT400036649	Potato	cytosol	26.67	62.22
TraesCS3B01G204200.3	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	61.88	61.88
VIT_04s0008g06380.t01	Wine grape	cytosol	9.77	61.67
Solyc05g016070.1.1	Tomato	cytosol	6.43	55.73
VIT_04s0008g06340.t01	Wine grape	cytosol	8.36	55.23
VIT_04s0008g06400.t01	Wine grape	mitochondrion	9.86	55.17
VIT_04s0008g06330.t01	Wine grape	extracellular	54.31	54.27
KRH61732	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	46.74	50.09
KRH52398	Soybean	cytosol	46.3	49.91
KRH05196	Soybean	cytosol	23.15	48.43
VIT_04s0008g06390.t01	Wine grape	extracellular	8.8	45.66
CDX79301	Canola	cytosol	5.81	30.41

Protein Annotations

MapMan:11.2.2.2	MapMan:15.5.53.1	Gene3D:2.130.10.10	InterPro:CTLH_C	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:Haem_d1_sf	InterPro:IPR001680	InterPro:IPR006594	InterPro:IPR006595	InterPro:IPR015943
InterPro:IPR017986	InterPro:LisH	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PFscan:PS50896	PFscan:PS50897	PANTHER:PTHR44083	PANTHER:PTHR44083:SF2	InterPro:Quinoprotein_ADH-like_supfam	SMART:SM00320
SMART:SM00667	SMART:SM00668	SUPFAM:SSF50998	SUPFAM:SSF51004	InterPro:Topless_fam	EnsemblPlantsGene:TraesCS4B01G220900
EnsemblPlants:TraesCS4B01G220900.3	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	SEG:seg

Description

No Description!

Coordinates

chr4B:+:464218227..464226036

Molecular Weight (calculated)

125223.0 Da

IEP (calculated)

7.138

GRAVY (calculated)

-0.306

Length

1136 amino acids

Sequence
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFYFNMKY FEDEVINGNW DEVERYLGGF TKVDDNRYSM KIFFEIRKQK YLEALDKHDR SKAVEILVKD
0101: LKVFASFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR AIMLVELKKL IEANPLFRDK LQFPNLKSSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCGQPNGA RAPSPANNPL LGSIPKPGGF PQLGAHGPFQ PAPTPVAPLA GWMSNPPAVT HPAVSGGAIG FGTPTNPAAM LKHPRTPSAA NPSMDYPSGD
0301: SDHVSKRPRP VGLSEEVNLP VNMMPVTYPQ SHSYPQDDFH KAVARTLSQG SAPMSMDFHP VQQTLLLVGT NVGDIGLWDV GTKDRLVVRN FKVWELGKCS
0401: MALQAALVKD PTVSVNRIIW SPDGTLFGVA YSRHIVQIYS YHGGDDIRQH LEIDAHVGGV NDIAFAHPNK QLCIITCGDD KTIKVWEATS GTKQFTFEGH
0501: EAPVYSVCPH YKENIQFIFS TALDGKIKAW LYDNLGSRVD YDAPGHWCTT MAYSADGSRL FSCGTSKEGE SHLVEWNESE GAVKRTYQGF RKRSMGVVQF
0601: DTTRNRFLAA GDEFVIKIWD MDNTSLLTTI EADGGLPASP RIRFNKEGTL LAVSTVDNGI KVLANADGVR LLRTLENRSF DASRSASETV TKPLINPLTA
0701: AAAAAAAAAA AAATSSGTAA PSPITAMNGD NRSLVDVKPR IADESMDKSK VWKLMEITDT AQCRSLKLGD SIRTAKISRL IYTNSGVAIL ALASNAVHLL
0801: WKWPRNERNS TGKATASVSP QLWQPPSGIL MTNDTIDNSP DEAVHCFALS KNDSYVMSAS GGKISLFNMM TFKTMTTFMP PPPAATFLAF HPQDNNIIAI
0901: GMDDSTIQIY NVRIDEVKSK LRGHSKKITG LAFSNVLNVL VSSGADAQIC VWNTDGWERQ RSRFLQIPSG RPTSNILDTR VQFHQDQQHC LVVHETQIAI
1001: YDASKLEPVK QWPPRETSAP PITHATFSCD SQLIYASFLD ATVCIFSASS LRLQCRILPA SYLPQNISSN VHPVVVAAHP SEANQFALGL TDGSVYVMEP
1101: LESERKWGIP PPAENGSTSN MSTPPNGASS SDQPER

Best Arabidopsis Sequence Match ( AT1G15750.3 )
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFFFNMKY FEDEVHNGNW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDKHDR PKAVDILVKD
0101: LKVFSTFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR AIMLVELKKL IEANPLFRDK LQFPTLRNSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCGPPNGA RAPSPVNNPL LGGIPKAGGF PPLGAHGPFQ PTASPVPTPL AGWMSSPSSV PHPAVSAGAI ALGGPSIPAA LKHPRTPPTN ASLDYPSADS
0301: EHVSKRTRPM GISDEVNLGV NMLPMSFSGQ AHGHSPAFKA PDDLPKTVAR TLSQGSSPMS MDFHPIKQTL LLVGTNVGDI GLWEVGSRER LVQKTFKVWD
0401: LSKCSMPLQA ALVKEPVVSV NRVIWSPDGS LFGVAYSRHI VQLYSYHGGE DMRQHLEIDA HVGGVNDISF STPNKQLCVI TCGDDKTIKV WDAATGVKRH
0501: TFEGHEAPVY SVCPHYKENI QFIFSTALDG KIKAWLYDNM GSRVDYDAPG RWCTTMAYSA DGTRLFSCGT SKDGESFIVE WNESEGAVKR TYQGFHKRSL
0601: GVVQFDTTKN RYLAAGDDFS IKFWDMDAVQ LLTAIDGDGG LQASPRIRFN KEGSLLAVSG NENVIKIMAN SDGLRLLHTF ENISSESSKP AINSIAAAAA
0701: AAATSAGHAD RSANVVSIQG MNGDSRNMVD VKPVITEESN DKSKIWKLTE VSEPSQCRSL RLPENLRVAK ISRLIFTNSG NAILALASNA IHLLWKWQRN
0801: ERNATGKATA SLPPQQWQPA SGILMTNDVA ETNPEEAVPC FALSKNDSYV MSASGGKISL FNMMTFKTMA TFMPPPPAAT FLAFHPQDNN IIAIGMDDST
0901: IQIYNVRVDE VKSKLKGHSK RITGLAFSNV LNVLVSSGAD AQLCVWNTDG WEKQRSKVLP LPQGRPNSAP SDTRVQFHQD QAHFLVVHET QLAIYETTKL
1001: ECMKQWAVRE SLAPITHATF SCDSQLVYAS FMDATVCVFS SANLRLRCRV NPSAYLPASL SNSNVHPLVI AAHPQEPNMF AVGLSDGGVH IFEPLESEGK
1101: WGVAPPAENG SASGAPTAPS VGASASDQPQ R

Arabidopsis Description

TPLProtein TOPLESS [Source:UniProtKB/Swiss-Prot;Acc:Q94AI7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.