Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 3
- golgi 3
- endoplasmic reticulum 3
- cytosol 2
- nucleus 2
- plasma membrane 2
- vacuole 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003569.1-P | Field mustard | cytosol | 93.39 | 96.05 |
| CDX67950 | Canola | cytosol | 96.25 | 95.91 |
| CDX79383 | Canola | cytosol | 95.54 | 95.54 |
| AT1G15750.3 | Thale cress | cytosol | 93.66 | 92.75 |
| KRH23604 | Soybean | endoplasmic reticulum | 85.09 | 84.19 |
| VIT_09s0002g08370.t01 | Wine grape | cytosol | 85.36 | 84.01 |
| KRH44501 | Soybean | cytosol | 84.64 | 83.67 |
| KRH47407 | Soybean | cytosol | 84.38 | 83.63 |
| KRH09700 | Soybean | cytosol | 83.21 | 82.48 |
| Solyc03g117360.2.1 | Tomato | nucleus | 82.5 | 81.77 |
| EER92538 | Sorghum | cytosol | 78.3 | 77.96 |
| GSMUA_Achr4P09920_001 | Banana | cytosol | 79.91 | 77.83 |
| Os03t0254700-01 | Rice | cytosol | 78.3 | 77.41 |
| TraesCS4D01G221200.1 | Wheat | cytosol | 78.12 | 77.16 |
| TraesCS4A01G083300.2 | Wheat | cytosol | 78.04 | 77.0 |
| HORVU0Hr1G008690.1 | Barley | cytosol, endoplasmic reticulum | 77.95 | 76.85 |
| TraesCS4B01G220900.3 | Wheat | cytosol | 77.77 | 76.67 |
| GSMUA_Achr6P36440_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 78.84 | 76.52 |
| GSMUA_Achr6P22950_001 | Banana | plasma membrane | 79.02 | 71.49 |
| AT3G15880.2 | Thale cress | cytosol | 69.91 | 68.87 |
| AT3G16830.1 | Thale cress | cytosol | 62.68 | 62.07 |
| AT5G27030.2 | Thale cress | cytosol, endoplasmic reticulum | 61.25 | 60.49 |
| Zm00001d050983_P001 | Maize | cytosol | 11.25 | 50.4 |
| Zm00001d004623_P001 | Maize | cytosol, plastid | 11.16 | 46.3 |
| Zm00001d027915_P001 | Maize | cytosol | 11.52 | 41.61 |
| Zm00001d045829_P001 | Maize | mitochondrion | 11.07 | 38.04 |
| Zm00001d052868_P001 | Maize | cytosol, peroxisome, plasma membrane | 7.68 | 36.44 |
| AT2G25420.4 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 22.05 | 33.07 |
Protein Annotations
| MapMan:11.2.2.2 | MapMan:15.5.53.1 | Gene3D:2.130.10.10 | EntrezGene:844388 | ProteinID:AAF27128.1 | EMBL:AC034256 |
| ProteinID:AEE36411.1 | ProteinID:AEE36412.1 | EMBL:AK226879 | ProteinID:ANM60269.1 | ArrayExpress:AT1G80490 | EnsemblPlantsGene:AT1G80490 |
| RefSeq:AT1G80490 | TAIR:AT1G80490 | RefSeq:AT1G80490-TAIR-G | EnsemblPlants:AT1G80490.2 | TAIR:AT1G80490.2 | Unigene:At.25188 |
| InterPro:CTLH_C | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009653 | GO:GO:0009790 | GO:GO:0009791 | GO:GO:0009987 | GO:GO:0010072 | InterPro:IPR001680 |
| InterPro:IPR006594 | InterPro:IPR006595 | InterPro:IPR015943 | InterPro:IPR017986 | InterPro:LisH | RefSeq:NP_001319429.1 |
| RefSeq:NP_178164.3 | RefSeq:NP_849913.2 | PFAM:PF00400 | PO:PO:0000005 | PO:PO:0000293 | ScanProsite:PS00678 |
| PFscan:PS50082 | PFscan:PS50294 | PFscan:PS50896 | PFscan:PS50897 | PANTHER:PTHR44083 | PANTHER:PTHR44083:SF2 |
| UniProt:Q0WV90 | InterPro:Quinoprotein_ADH-like_supfam | SMART:SM00320 | SMART:SM00667 | SMART:SM00668 | SUPFAM:SSF50978 |
| SUPFAM:SSF50998 | Symbol:TPR1 | InterPro:Topless_fam | UniParc:UPI000034F574 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat |
| InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg | : | : |
Description
TPR1Topless-related protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q0WV90]
Coordinates
chr1:-:30260818..30267125
Molecular Weight (calculated)
124096.0 Da
IEP (calculated)
7.138
GRAVY (calculated)
-0.321
Length
1120 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFFFNMKY FEDEVHNGNW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDRHDR PKAVDILVKD
0101: LKVFSTFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR AIMLVELKKL IEANPLFRDK LQFPTLRTSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCRLPNDA RAPSPVNNPL LGSLPKAEGF PPLGAHGPFQ PTPSPVPTPL AGWMSSPSSV PHPAVSGGPI ALGAPSIQAA LKHPRTPPSN SAVDYPSGDS
0301: DHVSKRTRPM GISDEVSLGV NMLPMTFPGQ AHGHNQTFKA PDDLPKTVAR TLSQGSSPMS MDFHPIKQTL LLVGTNVGDI GLWEVGSRER LVQKTFKVWD
0401: LSKCSMPLQA ALVKEPVVSV NRVIWSPDGS LFGVAYSRHI VQLYSYHGGE DMRQHLEIDA HVGGVNDIAF STPNKQLCVT TCGDDKTIKV WDAATGVKRY
0501: TFEGHEAPVY SICPHYKENI QFIFSTALDG KIKAWLYDNM GSRVDYEAPG RWCTTMAYSA DGTRLFSCGT SKDGESFIVE WNESEGAVKR TYQGFHKRSL
0601: GVVQFDTTKN RYLAAGDDFS IKFWDMDTIQ LLTAIDADGG LQASPRIRFN KEGSLLAVSA NDNMIKVMAN SDGLRLLHTV ENLSSESSKP AINSIPMVER
0701: PASVVSIPGM NGDSRNMVDV KPVITEESND KSKVWKLTEV GEPSQCRSLR LPENMRVTKI SRLIFTNSGN AILALASNAI HLLWKWQRND RNATGKATAS
0801: LPPQQWQPAS GILMTNDVAE TNPEEAVPCF ALSKNDSYVM SASGGKISLF NMMTFKTMAT FMPPPPAATF LAFHPQDNNI IAIGMDDSTI QIYNVRVDEV
0901: KSKLKGHSKR ITGLAFSNVL NVLVSSGADA QLCVWNTDGW EKQKSKVLQI PQGRSTSSLS DTRVQFHQDQ VHFLVVHETQ LAIYETTKLE CMKQWPVRES
1001: AAPITHATFS CDSQLIYTSF MDATICVFSS ANLRLRCRVN PSAYLPASLS NSNVHPLVIA AHPQESNMFA VGLSDGGVHI FEPLESEGKW GVAPPPENGS
1101: ASAVTATPSV GASASDQPQR
0101: LKVFSTFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR AIMLVELKKL IEANPLFRDK LQFPTLRTSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCRLPNDA RAPSPVNNPL LGSLPKAEGF PPLGAHGPFQ PTPSPVPTPL AGWMSSPSSV PHPAVSGGPI ALGAPSIQAA LKHPRTPPSN SAVDYPSGDS
0301: DHVSKRTRPM GISDEVSLGV NMLPMTFPGQ AHGHNQTFKA PDDLPKTVAR TLSQGSSPMS MDFHPIKQTL LLVGTNVGDI GLWEVGSRER LVQKTFKVWD
0401: LSKCSMPLQA ALVKEPVVSV NRVIWSPDGS LFGVAYSRHI VQLYSYHGGE DMRQHLEIDA HVGGVNDIAF STPNKQLCVT TCGDDKTIKV WDAATGVKRY
0501: TFEGHEAPVY SICPHYKENI QFIFSTALDG KIKAWLYDNM GSRVDYEAPG RWCTTMAYSA DGTRLFSCGT SKDGESFIVE WNESEGAVKR TYQGFHKRSL
0601: GVVQFDTTKN RYLAAGDDFS IKFWDMDTIQ LLTAIDADGG LQASPRIRFN KEGSLLAVSA NDNMIKVMAN SDGLRLLHTV ENLSSESSKP AINSIPMVER
0701: PASVVSIPGM NGDSRNMVDV KPVITEESND KSKVWKLTEV GEPSQCRSLR LPENMRVTKI SRLIFTNSGN AILALASNAI HLLWKWQRND RNATGKATAS
0801: LPPQQWQPAS GILMTNDVAE TNPEEAVPCF ALSKNDSYVM SASGGKISLF NMMTFKTMAT FMPPPPAATF LAFHPQDNNI IAIGMDDSTI QIYNVRVDEV
0901: KSKLKGHSKR ITGLAFSNVL NVLVSSGADA QLCVWNTDGW EKQKSKVLQI PQGRSTSSLS DTRVQFHQDQ VHFLVVHETQ LAIYETTKLE CMKQWPVRES
1001: AAPITHATFS CDSQLIYTSF MDATICVFSS ANLRLRCRVN PSAYLPASLS NSNVHPLVIA AHPQESNMFA VGLSDGGVHI FEPLESEGKW GVAPPPENGS
1101: ASAVTATPSV GASASDQPQR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.