Factsheet for AT2G25420.4

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, cytosol, plasma membrane, golgi

Predictor Summary:

nucleus 3
cytosol 2
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, secretory
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83225	Canola	cytosol	72.16	72.06
Bra000550.1-P	Field mustard	cytosol	59.17	71.87
CDY38509	Canola	cytosol	72.96	71.15
VIT_11s0016g05620.t01	Wine grape	cytosol	34.54	22.79
KRH03669	Soybean	nucleus	34.54	22.75
KRH20137	Soybean	endoplasmic reticulum	34.4	22.68
PGSC0003DMT400079377	Potato	cytosol	34.4	22.66
AT3G15880.2	Thale cress	cytosol	33.73	22.16
AT1G80490.2	Thale cress	cytosol	33.07	22.05
AT1G15750.3	Thale cress	cytosol	32.93	21.75
Solyc07g008040.2.1	Tomato	nucleus	31.59	21.51
AT3G16830.1	Thale cress	cytosol	30.39	20.07
AT5G27030.2	Thale cress	cytosol, endoplasmic reticulum	29.85	19.66

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EntrezGene:817080	UniProt:A0A1P8B2K0	ProteinID:ANM63108.1	ArrayExpress:AT2G25420
EnsemblPlantsGene:AT2G25420	RefSeq:AT2G25420	TAIR:AT2G25420	RefSeq:AT2G25420-TAIR-G	EnsemblPlants:AT2G25420.4	InterPro:Apc4_WD40_dom
Unigene:At.23385	InterPro:CTLH_C	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001680
InterPro:IPR006594	InterPro:IPR006595	InterPro:IPR015943	InterPro:IPR017986	InterPro:LisH	RefSeq:NP_001325219.1
PFAM:PF12894	PFscan:PS50082	PFscan:PS50294	PFscan:PS50896	PFscan:PS50897	PANTHER:PTHR44083
SMART:SM00320	SMART:SM00667	SMART:SM00668	SUPFAM:SSF50978	InterPro:Topless_fam	UniParc:UPI0008494300
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:

Description

transducin family protein / WD-40 repeat family protein [Source:TAIR;Acc:AT2G25420]

Coordinates

chr2:+:10816749..10821168

Molecular Weight (calculated)

84008.5 Da

IEP (calculated)

6.566

GRAVY (calculated)

-0.224

Length

747 amino acids

Sequence
(BLAST)

001: MILDEKNRKN LVFLILQFFD EEGYEESLHL LEQDSGVFFD FSYLSNAILN GNWKDADDYL SAFTSPEANT FSRKMFFGLF KLKFSEAPDR SGGSEAVKIF
101: SKDLRRIPVL KDDSFDDLVE VIAVDDMRIP EETCCVDKAP GRAKLCVDLH KLAESNPSLR GKLDFPSLNK SALLALISLL CPNCSRRKGG LKEDLICLIL
201: QFLYEAKYKN TLHKLEQETK VFFNLNYLAE VMKLGEYGKA EEYLGAFTNW EDNKYSKAMF LELQKLICLQ STEWEVATPS GSLDNMSLKI KLHASVAMLA
301: KKNPVLKDEL KFPSMEKSRL LTLVKQTMDW WTCNNTSSLE NVPVVSYLCG TPSSMKFFFK KTVPRKKKPN EIKDPSQCNA LVLPDCFSEE KIARLTYSPS
401: GDYILALAED ATHKLWTWSS SQNEFCKYTP KILKENVYPK PRLHQPQSGK TMENEMATSV QKSTSCFAVK GSYLFSTSGG KIAVFDLKNF EKVASFGSPT
501: PMATYFIFIP GDLLAVGLDD GSIFIHCLSS RKVKEKLEGH DQKITCLAFS RCFNVLVSSD SDGKLCLWST KSWVKLTSKN STRKFCNRSN LESTSLVTHI
601: QFDPYQIELL VVHDGWIGLY EVRTLDCRLQ WIPDASDPAI TSATYSSDGE IIYVGFRCGS IKIVDSKTFM TLCQINLTSF TQLSTSNISL EVYPTVVAAH
701: PSHPNQISAG LSNGKVIVLQ PLWSGGWGEA APLEDNGDYS NDSDHSY

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.