Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400079377 | Potato | cytosol | 97.72 | 94.53 |
| VIT_11s0016g05620.t01 | Wine grape | cytosol | 79.4 | 76.94 |
| KRH20137 | Soybean | endoplasmic reticulum | 79.4 | 76.88 |
| KRH03669 | Soybean | nucleus | 79.12 | 76.54 |
| Solyc03g116750.2.1 | Tomato | nucleus | 72.74 | 70.49 |
| Solyc03g117360.2.1 | Tomato | nucleus | 69.37 | 67.35 |
| Solyc05g016070.1.1 | Tomato | cytosol | 7.66 | 64.12 |
| Solyc03g117380.2.1 | Tomato | cytosol | 2.1 | 62.16 |
| Solyc08g076030.2.1 | Tomato | nucleus | 62.99 | 60.88 |
| Bra028653.1-P | Field mustard | mitochondrion | 67.64 | 60.67 |
| Solyc01g100050.2.1 | Tomato | nucleus | 62.17 | 60.25 |
| Solyc03g117370.2.1 | Tomato | cytosol | 21.6 | 58.52 |
| Bra006005.1-P | Field mustard | cytosol | 55.79 | 56.98 |
| Bra006006.1-P | Field mustard | cytosol | 47.49 | 53.22 |
| Solyc03g117410.2.1 | Tomato | cytosol | 5.93 | 45.45 |
| Solyc08g029050.2.1 | Tomato | cytosol | 44.48 | 39.97 |
| AT2G25420.4 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 21.51 | 31.59 |
| CDX83225 | Canola | cytosol | 20.69 | 30.35 |
| CDY38509 | Canola | cytosol | 21.06 | 30.16 |
Protein Annotations
| MapMan:11.2.2.2 | MapMan:15.5.53.1 | Gene3D:2.130.10.10 | InterPro:CTLH_C | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | InterPro:Haem_d1_sf | InterPro:IPR001680 | InterPro:IPR006595 | InterPro:IPR015943 | InterPro:IPR017986 |
| UniProt:K4CBS3 | PFAM:PF00400 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PFscan:PS50897 |
| PANTHER:PTHR44083 | PANTHER:PTHR44083:SF4 | InterPro:Quinoprotein_ADH-like_supfam | SMART:SM00320 | SMART:SM00668 | SUPFAM:SSF50978 |
| SUPFAM:SSF50998 | SUPFAM:SSF51004 | EnsemblPlantsGene:Solyc07g008040.2 | EnsemblPlants:Solyc07g008040.2.1 | InterPro:Topless_fam | UniParc:UPI000276B1F2 |
| InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg |
Description
No Description!
Coordinates
chr7:+:2754512..2761546
Molecular Weight (calculated)
120406.0 Da
IEP (calculated)
7.182
GRAVY (calculated)
-0.340
Length
1097 amino acids
Sequence
(BLAST)
(BLAST)
0001: MRHFDEMVGN GEWDEVEKYL SGFTKVDDNR YSMKIFFEIR KQKYLEALDR NDRPKAVEIL VKDLKVFSAF NEELFKEITQ LLTLDNFRDN EQLSKYGDTK
0101: SARGIMLLEL KKLIEANPLF RDKLTFPSLK NARLRTLINQ SLNWQHQLCK SPKPNPDIKT LFVDHSCGPS QPNGARAPSI VTHPLMGAVP KPGVFQALGP
0201: HGVTSFQQGP APLQNALAGW MPNPSQVSHP SASAGPIGFT TPNNAAAAML KRPRTPTNNS AVDYQTADSE HMLKRSRPFG VSDEVNNMPI NILPGGYSGQ
0301: SHAQSSYSSD DLPKAFVMTL NQGSSVKSMD FHPVQQILLL VGTGTGEVML WELGSRERIA NRNFKIWDLS QCSVALQASM ASEYSAAVNR VMWSPDGTLF
0401: GVAFSKHLVH VYSYHGGDDL RNHLEIEAHS GSVNDLAFSY PNKQICIVTC GDDRLIKVWD AATGAKQYTF EGHEAPVYSV CPHHKESIQF IFSTAIDGKI
0501: KAWLYDNVGS RVDYDAPGHS STTMAYSADG TRLFSCGTNK EGESYLVEWN ESEGAVKRTF SGLGKRAGGV VQFDTTKNRF LAAGDEFMIK FWEMDSVNLL
0601: TTTDADGGLP ASPCLRFNKE GMLLAVSTSD NGLKILANAD GVRLLRSMEN RPFDASRVSS ASAVKPSTVG SFGPPSTSVA ASFVDRAVPM TSMNGESRNL
0701: GDARPRAAEE PVDKSKIWKP TEINEPSQCR FLKLPDSATT PRVTRLIYTN SGYAILALAA NAVHKLWKWP RNDRHPTGKA NASIVPQLWQ PASGTLMTND
0801: TNDTNPEEVV PCFALSKNDS YVMSASGGKI SLFNMMTFKT MTTFMPAPPA ATFLAFHPQD NNVIAIGMDD SSIQIYNVRV DEVKTKLKGH QKRITGLAFS
0901: NSLNVLISAG ADSQLCVWSS DTWEKQTSKY LQIPAGRAAA PQADTRVQFH QDQTQLLVVH ETQIAIFEAP KLECLKQWVP REVTGPITHA TYSCDSQSIF
1001: VSFEDASVGV LSAYTLRWRC RINPTSYLPA NPSARVHPLV IAAHPSDPNQ FALGLNDGAV IVLEPLEAEG KWGMLPPADN GNGPSTSGAA NSDQPQR
0101: SARGIMLLEL KKLIEANPLF RDKLTFPSLK NARLRTLINQ SLNWQHQLCK SPKPNPDIKT LFVDHSCGPS QPNGARAPSI VTHPLMGAVP KPGVFQALGP
0201: HGVTSFQQGP APLQNALAGW MPNPSQVSHP SASAGPIGFT TPNNAAAAML KRPRTPTNNS AVDYQTADSE HMLKRSRPFG VSDEVNNMPI NILPGGYSGQ
0301: SHAQSSYSSD DLPKAFVMTL NQGSSVKSMD FHPVQQILLL VGTGTGEVML WELGSRERIA NRNFKIWDLS QCSVALQASM ASEYSAAVNR VMWSPDGTLF
0401: GVAFSKHLVH VYSYHGGDDL RNHLEIEAHS GSVNDLAFSY PNKQICIVTC GDDRLIKVWD AATGAKQYTF EGHEAPVYSV CPHHKESIQF IFSTAIDGKI
0501: KAWLYDNVGS RVDYDAPGHS STTMAYSADG TRLFSCGTNK EGESYLVEWN ESEGAVKRTF SGLGKRAGGV VQFDTTKNRF LAAGDEFMIK FWEMDSVNLL
0601: TTTDADGGLP ASPCLRFNKE GMLLAVSTSD NGLKILANAD GVRLLRSMEN RPFDASRVSS ASAVKPSTVG SFGPPSTSVA ASFVDRAVPM TSMNGESRNL
0701: GDARPRAAEE PVDKSKIWKP TEINEPSQCR FLKLPDSATT PRVTRLIYTN SGYAILALAA NAVHKLWKWP RNDRHPTGKA NASIVPQLWQ PASGTLMTND
0801: TNDTNPEEVV PCFALSKNDS YVMSASGGKI SLFNMMTFKT MTTFMPAPPA ATFLAFHPQD NNVIAIGMDD SSIQIYNVRV DEVKTKLKGH QKRITGLAFS
0901: NSLNVLISAG ADSQLCVWSS DTWEKQTSKY LQIPAGRAAA PQADTRVQFH QDQTQLLVVH ETQIAIFEAP KLECLKQWVP REVTGPITHA TYSCDSQSIF
1001: VSFEDASVGV LSAYTLRWRC RINPTSYLPA NPSARVHPLV IAAHPSDPNQ FALGLNDGAV IVLEPLEAEG KWGMLPPADN GNGPSTSGAA NSDQPQR
0001: MSSLSRELVF LILQFLDEEK FKDTVHRLEK ESGFFFNMRY FEDSVTAGEW DDVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDKKDH AKAVDILVKE
0101: LKVFSTFNEE LFKEITMLLT LTNFRENEQL SKYGDTKSAR GIMLGELKKL IEANPLFRDK LQFPSLKNSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHTCGHPNGA HTPSPTTNHL MGSVPKVGGF PPLGAHGPFQ PTPAPLTTSL AGWMPNPSVQ HPTVSAGPIG LGAPNSAVSM LKRERPRSPP TNSLSMDYQT
0301: ADSESVLKRP RPFGISDGVN NLPVNVLPVT YPGQSHAHAT YSTDDLPKNV SRILSQGSAI KSMDFHPVQQ TMLLVGTNLG DIAIWEVGSR EKLVSRSFKV
0401: WDLATCTVNL QASLASEYTA AVNRVVWSPD GGLLGVAYSK HIVHIYSYHG GEDLRNHLEI DAHAGNVNDL AFSQPNQQLC VVTCGEDKTI KVWDAVTGNK
0501: LHTFEGHEAP VYSVCPHQKE NIQFIFSTAV DGKIKAWLYD NMGSRVDYDA PGRSCTSMAY CADGTRLFSC GTSKEGESFI VEWNESEGAV KRTYLGLGKR
0601: SVGVVQFDTM KNKFLVAGDE FQVKFWDMDS VDLLSSTAAE GGLPSSPCLR INKEGTLLAV STTDNGIKIL ANAEGSRILH SMANRGLDSS RAPPGSVAKG
0701: PIVGTFGTPN SSTGMSLSMG ERSGPVASVT GLNGDNRSLP DVKPRIADDA EKSKTWKLTE ISERSQLRTL RLPDTLLPAR VVKLIYTNSG GAILALAENA
0801: AHKLWKWQKS ERNLLGKANS NVPPQLWQPS SGVLMTNDTR EGNKEDVVPC FALSKNDSYV MSASGGKISL FNMMTFKTMT TFMAPPPAAT SLAFHPQDNN
0901: IIAIGMDDSS IQIYNVRVDE VKSKLKGHQK RVTGLAFSNV LNVLVSSGAD SQLCVWSMDG WEKQASKQIQ IPSGHSPNPL AHTRVQFHQD QIHVLVVHAS
1001: QLAIYEAPKL ENMKQWIPKE SSGSVTDAVY SCDSQSIYAA FDDGSVSILT ATTLQLKCRI GPNSYLPSNP SSRVYPATVA AHPSEPNQFA VGLTDGGVHV
1101: IEPPGPEGKW GISAPPENGA GPSVSSAPGS DQQPR
0101: LKVFSTFNEE LFKEITMLLT LTNFRENEQL SKYGDTKSAR GIMLGELKKL IEANPLFRDK LQFPSLKNSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHTCGHPNGA HTPSPTTNHL MGSVPKVGGF PPLGAHGPFQ PTPAPLTTSL AGWMPNPSVQ HPTVSAGPIG LGAPNSAVSM LKRERPRSPP TNSLSMDYQT
0301: ADSESVLKRP RPFGISDGVN NLPVNVLPVT YPGQSHAHAT YSTDDLPKNV SRILSQGSAI KSMDFHPVQQ TMLLVGTNLG DIAIWEVGSR EKLVSRSFKV
0401: WDLATCTVNL QASLASEYTA AVNRVVWSPD GGLLGVAYSK HIVHIYSYHG GEDLRNHLEI DAHAGNVNDL AFSQPNQQLC VVTCGEDKTI KVWDAVTGNK
0501: LHTFEGHEAP VYSVCPHQKE NIQFIFSTAV DGKIKAWLYD NMGSRVDYDA PGRSCTSMAY CADGTRLFSC GTSKEGESFI VEWNESEGAV KRTYLGLGKR
0601: SVGVVQFDTM KNKFLVAGDE FQVKFWDMDS VDLLSSTAAE GGLPSSPCLR INKEGTLLAV STTDNGIKIL ANAEGSRILH SMANRGLDSS RAPPGSVAKG
0701: PIVGTFGTPN SSTGMSLSMG ERSGPVASVT GLNGDNRSLP DVKPRIADDA EKSKTWKLTE ISERSQLRTL RLPDTLLPAR VVKLIYTNSG GAILALAENA
0801: AHKLWKWQKS ERNLLGKANS NVPPQLWQPS SGVLMTNDTR EGNKEDVVPC FALSKNDSYV MSASGGKISL FNMMTFKTMT TFMAPPPAAT SLAFHPQDNN
0901: IIAIGMDDSS IQIYNVRVDE VKSKLKGHQK RVTGLAFSNV LNVLVSSGAD SQLCVWSMDG WEKQASKQIQ IPSGHSPNPL AHTRVQFHQD QIHVLVVHAS
1001: QLAIYEAPKL ENMKQWIPKE SSGSVTDAVY SCDSQSIYAA FDDGSVSILT ATTLQLKCRI GPNSYLPSNP SSRVYPATVA AHPSEPNQFA VGLTDGGVHV
1101: IEPPGPEGKW GISAPPENGA GPSVSSAPGS DQQPR
Arabidopsis Description
WSIP2WUS-interacting protein 2 [Source:TAIR;Acc:AT3G15880]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.