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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • extracellular 3
  • endoplasmic reticulum 3
  • vacuole 3
  • plasma membrane 3
  • golgi 3
  • cytosol 2
  • nucleus 2
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, nucleus, secretory
BaCelLo:secretory
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:secretory
TargetP:secretory
WoLF PSORT:nucleus
YLoc:cytosol
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH03669 Soybean nucleus 98.94 98.85
VIT_11s0016g05620.t01 Wine grape cytosol 86.94 87.01
PGSC0003DMT400079377 Potato cytosol 79.79 79.72
Solyc07g008040.2.1 Tomato nucleus 76.88 79.4
KRH33863 Soybean cytosol 18.53 76.36
KRH23604 Soybean endoplasmic reticulum 75.99 76.06
KRH44501 Soybean cytosol 75.46 75.46
KRH47407 Soybean cytosol 75.02 75.22
KRH09700 Soybean cytosol 73.79 73.98
Bra028653.1-P Field mustard mitochondrion 72.55 67.21
KRH68470 Soybean nucleus 63.2 63.36
KRG92932 Soybean nucleus 63.11 63.27
KRG96753 Soybean endoplasmic reticulum 62.75 62.92
Bra006005.1-P Field mustard cytosol 58.87 62.1
KRH33861 Soybean cytosol 44.04 59.26
Bra006006.1-P Field mustard cytosol 48.28 55.87
KRH30800 Soybean mitochondrion 15.09 52.45
KRH61732 Soybean cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 45.63 48.77
KRH52398 Soybean cytosol 45.01 48.39
KRH05196 Soybean cytosol 22.24 46.41
AT2G25420.4 Thale cress cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 22.68 34.4
CDX83225 Canola cytosol 22.42 33.96
CDY38509 Canola cytosol 22.86 33.81
Protein Annotations
EntrezGene:100799941MapMan:11.2.2.2MapMan:15.5.53.1Gene3D:2.130.10.10EMBL:ACUP02008240InterPro:CTLH_C
EnsemblPlantsGene:GLYMA_13G158800GO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0006139GO:GO:0006355
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987InterPro:IPR001680InterPro:IPR006594
InterPro:IPR006595InterPro:IPR015943InterPro:IPR017986UniProt:K7M027EnsemblPlants:KRH20137ProteinID:KRH20137
ProteinID:KRH20137.1InterPro:LisHPFAM:PF00400ScanProsite:PS00678PFscan:PS50082PFscan:PS50294
PFscan:PS50896PFscan:PS50897PANTHER:PTHR44083PANTHER:PTHR44083:SF4SMART:SM00320SMART:SM00667
SMART:SM00668SUPFAM:SSF50978SUPFAM:SSF75011InterPro:Topless_famUniParc:UPI000296A415InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeatInterPro:WD40_repeat_CSInterPro:WD40_repeat_domInterPro:WD40_repeat_dom_sfSEG:seg:
Description
hypothetical protein
Coordinates
chr13:-:27394635..27402118
Molecular Weight (calculated)
124756.0 Da
IEP (calculated)
7.060
GRAVY (calculated)
-0.285
Length
1133 amino acids
Sequence
(BLAST)
0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFFFNMRY FEDMVTNGEW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDKQDR AKAVDILVKD
0101: LKVFAAFNEE LFKEITQLLT LDNFRHNEQL SKYGDTKSAR GIMLAELKKL IEANPLFRDK LQFPTLKNSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCGQPNGA RAPSPVTNPL MGAVPKAGGF PPLGAHGPFQ PTPAALPTSL AGWMANPSPV PHPSASAGPI GLAAANNAAA ILKRPRTPPT NNPAMDYQTA
0301: DSDHVLKRTR PFGLSDEVSN LPVNLLPVAY SGQSHGQSSY SSDDLPKTIV MTLNQGSIVK SMDFHPLQQI LLLVGTNMGD VMVWDIGSRE RIAQRNFKVW
0401: ELGSCSVALQ ASLSNDYSAS VNRVVWSPDG TLCSVAYSKH IVHIYSYQGG DDLRNHLEIE AHAGSVNDLA FSYPNKQLCV VTCGEDRVIK VWDAVTGAKQ
0501: YTFEGHEAPV YSVCPHHKES IQFIFSTATD GKIKAWLYDN MGSRVDYDAP GHSSTTMAYS ADGTRLFSCG TNKEGESFLV EWNESEGAVK RTYHGLGKRS
0601: VGVVQFDTTK NRFLAAGDEF MIKFWDMDNT NMLTSVEADG GLLASPCIRF NKDGILLAVS TNDSGVKILA NAEGIRLLRT VENRTFDASR VASAAVVKAP
0701: TIGAFPSTNV TVGTSLADRA PPVAAMVGIN NDTRNLADVK PRIVDEAVEK SRIWKLTEIN EPSQCRSLKL PDSLSSMRVS RLIYTNQGVA ILALAANAVH
0801: KLWKWQRNER NTTGKATASI QPQLWQPSSG ILMTNDISDT NPEDAVSCFA LSKNDSYVMS ASGGKISLFN MMTFKTMTTF MPPPPAATFL AFHPQDNNII
0901: AIGMEDSSIQ IYNVRVDEVK TKLKGHQKRI TGLAFSHVLN VLVSSGADSQ LCVWSTDGWE KQASKFLQMP SGRPPAPLAD TRVQFHLDQT HLLAVHETQI
1001: ALYEAPKLEC IKQFSPREAN PITHATYSCD SQSIYVSFED GSIGILTVPA LRLRCRINQS AYLHPNPSLR VHPLVIAAHP SEPNQFALGL TDGGVHVLEP
1101: LEAEGKWGTP PPNENGAGPS TTSGAAVSEQ TQR
Best Arabidopsis Sequence Match ( AT3G15880.2 )
(BLAST)
0001: MSSLSRELVF LILQFLDEEK FKDTVHRLEK ESGFFFNMRY FEDSVTAGEW DDVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDKKDH AKAVDILVKE
0101: LKVFSTFNEE LFKEITMLLT LTNFRENEQL SKYGDTKSAR GIMLGELKKL IEANPLFRDK LQFPSLKNSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHTCGHPNGA HTPSPTTNHL MGSVPKVGGF PPLGAHGPFQ PTPAPLTTSL AGWMPNPSVQ HPTVSAGPIG LGAPNSAVSM LKRERPRSPP TNSLSMDYQT
0301: ADSESVLKRP RPFGISDGVN NLPVNVLPVT YPGQSHAHAT YSTDDLPKNV SRILSQGSAI KSMDFHPVQQ TMLLVGTNLG DIAIWEVGSR EKLVSRSFKV
0401: WDLATCTVNL QASLASEYTA AVNRVVWSPD GGLLGVAYSK HIVHIYSYHG GEDLRNHLEI DAHAGNVNDL AFSQPNQQLC VVTCGEDKTI KVWDAVTGNK
0501: LHTFEGHEAP VYSVCPHQKE NIQFIFSTAV DGKIKAWLYD NMGSRVDYDA PGRSCTSMAY CADGTRLFSC GTSKEGESFI VEWNESEGAV KRTYLGLGKR
0601: SVGVVQFDTM KNKFLVAGDE FQVKFWDMDS VDLLSSTAAE GGLPSSPCLR INKEGTLLAV STTDNGIKIL ANAEGSRILH SMANRGLDSS RAPPGSVAKG
0701: PIVGTFGTPN SSTGMSLSMG ERSGPVASVT GLNGDNRSLP DVKPRIADDA EKSKTWKLTE ISERSQLRTL RLPDTLLPAR VVKLIYTNSG GAILALAENA
0801: AHKLWKWQKS ERNLLGKANS NVPPQLWQPS SGVLMTNDTR EGNKEDVVPC FALSKNDSYV MSASGGKISL FNMMTFKTMT TFMAPPPAAT SLAFHPQDNN
0901: IIAIGMDDSS IQIYNVRVDE VKSKLKGHQK RVTGLAFSNV LNVLVSSGAD SQLCVWSMDG WEKQASKQIQ IPSGHSPNPL AHTRVQFHQD QIHVLVVHAS
1001: QLAIYEAPKL ENMKQWIPKE SSGSVTDAVY SCDSQSIYAA FDDGSVSILT ATTLQLKCRI GPNSYLPSNP SSRVYPATVA AHPSEPNQFA VGLTDGGVHV
1101: IEPPGPEGKW GISAPPENGA GPSVSSAPGS DQQPSDS
Arabidopsis Description
WSIP2WUS-interacting protein 2 [Source:TAIR;Acc:AT3G15880]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.